EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000013955 (Gene tree)
Gene ID: 102359866
Gene Symbol: NCBP1
Alias: CBP80|NCBP|Sto1
Full Name: nuclear cap binding protein subunit 1
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Minus strand
Length: 47779 bases
Position: chrJH127010.1:936060-983838
Accession: 102359866
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000015848	MIF4G_like	PF09088.11	3.6e-37	1	1
ENSLACP00000015848	MIF4G_like_2	PF09090.11	3.7e-66	1	1
ENSLACP00000015848	MIF4G	PF02854.19	4.3e-29	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000015958	NCBP1-201	2415	XM_005998432	ENSLACP00000015848	804 (aa)	-	H3B1S7

Gene Model

Click here to download ENSLACG00000013955's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm03013	RNA transport	KEGG
lcm03015	mRNA surveillance pathway	KEGG
lcm03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000013955's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000013955	NCBP1	100	79.851	ENSG00000136937	NCBP1	100	80.348	Homo_sapiens
ENSLACG00000013955	NCBP1	99	78.731	ENSAPOG00000008002	NCBP1	99	78.331	Acanthochromis_polyacanthus
ENSLACG00000013955	NCBP1	100	80.224	ENSAMEG00000004763	NCBP1	100	80.721	Ailuropoda_melanoleuca
ENSLACG00000013955	NCBP1	99	78.980	ENSACIG00000000274	NCBP1	99	78.705	Amphilophus_citrinellus
ENSLACG00000013955	NCBP1	99	78.980	ENSAOCG00000021148	NCBP1	99	78.580	Amphiprion_ocellaris
ENSLACG00000013955	NCBP1	99	78.980	ENSAPEG00000001701	NCBP1	99	78.580	Amphiprion_percula
ENSLACG00000013955	NCBP1	99	78.234	ENSATEG00000006929	NCBP1	99	77.833	Anabas_testudineus
ENSLACG00000013955	NCBP1	95	81.120	ENSAPLG00000016318	NCBP1	100	80.990	Anas_platyrhynchos
ENSLACG00000013955	NCBP1	100	80.050	ENSACAG00000004409	NCBP1	87	80.050	Anolis_carolinensis
ENSLACG00000013955	NCBP1	95	80.815	ENSANAG00000025744	NCBP1	99	80.491	Aotus_nancymaae
ENSLACG00000013955	NCBP1	99	78.483	ENSACLG00000014812	NCBP1	99	78.082	Astatotilapia_calliptera
ENSLACG00000013955	NCBP1	99	76.741	ENSAMXG00000016364	NCBP1	99	76.712	Astyanax_mexicanus
ENSLACG00000013955	NCBP1	100	79.602	ENSBTAG00000009732	NCBP1	99	86.787	Bos_taurus
ENSLACG00000013955	NCBP1	98	34.701	WBGene00018156	ncbp-1	99	33.701	Caenorhabditis_elegans
ENSLACG00000013955	NCBP1	100	79.975	ENSCJAG00000010840	NCBP1	97	89.487	Callithrix_jacchus
ENSLACG00000013955	NCBP1	100	79.975	ENSCAFG00000002445	NCBP1	100	80.473	Canis_familiaris
ENSLACG00000013955	NCBP1	98	80.657	ENSCAFG00020017997	NCBP1	97	90.123	Canis_lupus_dingo
ENSLACG00000013955	NCBP1	100	79.353	ENSCHIG00000020139	NCBP1	100	79.851	Capra_hircus
ENSLACG00000013955	NCBP1	50	90.025	ENSTSYG00000011914	NCBP1	99	88.854	Carlito_syrichta
ENSLACG00000013955	NCBP1	81	70.706	ENSCAPG00000014252	NCBP1	90	70.706	Cavia_aperea
ENSLACG00000013955	NCBP1	95	80.131	ENSCPOG00000012573	NCBP1	99	80.654	Cavia_porcellus
ENSLACG00000013955	NCBP1	100	79.851	ENSCCAG00000032297	NCBP1	100	80.348	Cebus_capucinus
ENSLACG00000013955	NCBP1	100	79.851	ENSCATG00000010052	NCBP1	100	80.348	Cercocebus_atys
ENSLACG00000013955	NCBP1	100	79.851	ENSCLAG00000014339	NCBP1	100	80.348	Chinchilla_lanigera
ENSLACG00000013955	NCBP1	100	79.851	ENSCSAG00000010929	NCBP1	100	80.348	Chlorocebus_sabaeus
ENSLACG00000013955	NCBP1	89	89.720	ENSCHOG00000010332	NCBP1	89	90.476	Choloepus_hoffmanni
ENSLACG00000013955	NCBP1	100	78.483	ENSCPBG00000024344	NCBP1	99	81.719	Chrysemys_picta_bellii
ENSLACG00000013955	NCBP1	99	49.257	ENSCING00000008990	-	99	49.257	Ciona_intestinalis
ENSLACG00000013955	NCBP1	99	48.831	ENSCSAVG00000005300	-	98	48.831	Ciona_savignyi
ENSLACG00000013955	NCBP1	100	79.851	ENSCANG00000036913	NCBP1	100	80.348	Colobus_angolensis_palliatus
ENSLACG00000013955	NCBP1	100	79.229	ENSCGRG00001015771	Ncbp1	100	79.726	Cricetulus_griseus_chok1gshd
ENSLACG00000013955	NCBP1	99	79.523	ENSCGRG00000010311	Ncbp1	99	80.506	Cricetulus_griseus_crigri
ENSLACG00000013955	NCBP1	99	78.607	ENSCSEG00000012377	NCBP1	99	78.207	Cynoglossus_semilaevis
ENSLACG00000013955	NCBP1	99	77.019	ENSCVAG00000008795	NCBP1	99	76.463	Cyprinodon_variegatus
ENSLACG00000013955	NCBP1	100	79.229	ENSDNOG00000006885	NCBP1	100	79.856	Dasypus_novemcinctus
ENSLACG00000013955	NCBP1	100	76.244	ENSDORG00000013652	Ncbp1	100	76.361	Dipodomys_ordii
ENSLACG00000013955	NCBP1	100	54.286	FBgn0022942	Cbp80	100	54.286	Drosophila_melanogaster
ENSLACG00000013955	NCBP1	82	31.664	FBgn0038887	CG7907	79	33.063	Drosophila_melanogaster
ENSLACG00000013955	NCBP1	89	71.915	ENSETEG00000009705	NCBP1	89	71.915	Echinops_telfairi
ENSLACG00000013955	NCBP1	100	68.323	ENSEBUG00000008386	NCBP1	100	68.323	Eptatretus_burgeri
ENSLACG00000013955	NCBP1	100	79.602	ENSEASG00005022795	NCBP1	100	80.100	Equus_asinus_asinus
ENSLACG00000013955	NCBP1	100	79.726	ENSECAG00000013847	NCBP1	100	80.224	Equus_caballus
ENSLACG00000013955	NCBP1	95	74.446	ENSEEUG00000015973	NCBP1	99	74.837	Erinaceus_europaeus
ENSLACG00000013955	NCBP1	99	77.958	ENSELUG00000022519	NCBP1	99	77.958	Esox_lucius
ENSLACG00000013955	NCBP1	100	79.851	ENSFCAG00000001206	NCBP1	100	80.348	Felis_catus
ENSLACG00000013955	NCBP1	98	81.784	ENSFALG00000001193	NCBP1	100	82.093	Ficedula_albicollis
ENSLACG00000013955	NCBP1	100	79.726	ENSFDAG00000010864	NCBP1	100	80.224	Fukomys_damarensis
ENSLACG00000013955	NCBP1	99	77.764	ENSFHEG00000000655	NCBP1	99	76.961	Fundulus_heteroclitus
ENSLACG00000013955	NCBP1	99	76.332	ENSGMOG00000008653	NCBP1	99	76.090	Gadus_morhua
ENSLACG00000013955	NCBP1	98	82.152	ENSGALG00000002087	NCBP1	100	81.219	Gallus_gallus
ENSLACG00000013955	NCBP1	99	78.137	ENSGAFG00000017787	NCBP1	99	77.460	Gambusia_affinis
ENSLACG00000013955	NCBP1	99	77.736	ENSGACG00000016772	NCBP1	98	77.736	Gasterosteus_aculeatus
ENSLACG00000013955	NCBP1	98	82.219	ENSGAGG00000019483	NCBP1	98	82.911	Gopherus_agassizii
ENSLACG00000013955	NCBP1	100	79.851	ENSGGOG00000001376	NCBP1	100	80.348	Gorilla_gorilla
ENSLACG00000013955	NCBP1	99	78.483	ENSHBUG00000020843	NCBP1	99	78.082	Haplochromis_burtoni
ENSLACG00000013955	NCBP1	98	70.076	ENSHGLG00000018112	-	98	70.076	Heterocephalus_glaber_female
ENSLACG00000013955	NCBP1	100	79.726	ENSHGLG00000001882	NCBP1	100	80.224	Heterocephalus_glaber_female
ENSLACG00000013955	NCBP1	98	69.823	ENSHGLG00100017373	-	98	69.823	Heterocephalus_glaber_male
ENSLACG00000013955	NCBP1	100	79.726	ENSHGLG00100013014	NCBP1	100	80.224	Heterocephalus_glaber_male
ENSLACG00000013955	NCBP1	74	68.227	ENSHCOG00000000204	NCBP1	87	68.227	Hippocampus_comes
ENSLACG00000013955	NCBP1	99	77.584	ENSIPUG00000007275	ncbp1	99	77.584	Ictalurus_punctatus
ENSLACG00000013955	NCBP1	100	79.851	ENSSTOG00000002695	NCBP1	100	80.348	Ictidomys_tridecemlineatus
ENSLACG00000013955	NCBP1	99	77.985	ENSKMAG00000003594	NCBP1	99	87.627	Kryptolebias_marmoratus
ENSLACG00000013955	NCBP1	99	76.933	ENSLBEG00000011661	NCBP1	99	76.413	Labrus_bergylta
ENSLACG00000013955	NCBP1	99	66.790	ENSLOCG00000009579	NCBP1	99	67.118	Lepisosteus_oculatus
ENSLACG00000013955	NCBP1	100	79.851	ENSLAFG00000005999	NCBP1	100	80.348	Loxodonta_africana
ENSLACG00000013955	NCBP1	100	79.851	ENSMFAG00000030994	NCBP1	100	80.348	Macaca_fascicularis
ENSLACG00000013955	NCBP1	99	80.454	ENSMMUG00000012281	NCBP1	99	80.952	Macaca_mulatta
ENSLACG00000013955	NCBP1	100	79.851	ENSMNEG00000042790	NCBP1	100	80.348	Macaca_nemestrina
ENSLACG00000013955	NCBP1	100	79.851	ENSMLEG00000030374	NCBP1	100	80.348	Mandrillus_leucophaeus
ENSLACG00000013955	NCBP1	99	77.985	ENSMAMG00000014806	NCBP1	99	78.327	Mastacembelus_armatus
ENSLACG00000013955	NCBP1	97	77.821	ENSMZEG00005009290	-	99	77.821	Maylandia_zebra
ENSLACG00000013955	NCBP1	99	78.483	ENSMZEG00005003469	NCBP1	99	78.082	Maylandia_zebra
ENSLACG00000013955	NCBP1	98	80.000	ENSMAUG00000020583	Ncbp1	99	80.506	Mesocricetus_auratus
ENSLACG00000013955	NCBP1	100	79.478	ENSMICG00000012682	NCBP1	100	79.975	Microcebus_murinus
ENSLACG00000013955	NCBP1	100	79.104	ENSMOCG00000015818	Ncbp1	100	79.602	Microtus_ochrogaster
ENSLACG00000013955	NCBP1	90	76.204	ENSMMOG00000002610	NCBP1	99	76.204	Mola_mola
ENSLACG00000013955	NCBP1	100	78.607	ENSMODG00000003202	NCBP1	99	78.358	Monodelphis_domestica
ENSLACG00000013955	NCBP1	99	77.736	ENSMALG00000003547	NCBP1	99	77.335	Monopterus_albus
ENSLACG00000013955	NCBP1	100	78.980	MGP_CAROLIEiJ_G0025982	Ncbp1	100	79.478	Mus_caroli
ENSLACG00000013955	NCBP1	100	78.980	ENSMUSG00000028330	Ncbp1	100	79.478	Mus_musculus
ENSLACG00000013955	NCBP1	100	79.229	MGP_PahariEiJ_G0028318	Ncbp1	100	79.726	Mus_pahari
ENSLACG00000013955	NCBP1	100	78.980	MGP_SPRETEiJ_G0026945	Ncbp1	100	79.478	Mus_spretus
ENSLACG00000013955	NCBP1	100	79.851	ENSMPUG00000006399	NCBP1	100	80.348	Mustela_putorius_furo
ENSLACG00000013955	NCBP1	98	79.367	ENSMLUG00000015201	NCBP1	99	79.873	Myotis_lucifugus
ENSLACG00000013955	NCBP1	100	79.975	ENSNGAG00000014101	Ncbp1	100	79.975	Nannospalax_galili
ENSLACG00000013955	NCBP1	76	87.773	ENSNBRG00000014674	NCBP1	97	87.773	Neolamprologus_brichardi
ENSLACG00000013955	NCBP1	100	79.851	ENSNLEG00000016909	NCBP1	100	80.348	Nomascus_leucogenys
ENSLACG00000013955	NCBP1	89	83.090	ENSMEUG00000010672	NCBP1	90	83.090	Notamacropus_eugenii
ENSLACG00000013955	NCBP1	79	88.235	ENSOPRG00000002144	-	83	88.235	Ochotona_princeps
ENSLACG00000013955	NCBP1	100	79.726	ENSODEG00000003232	NCBP1	100	80.224	Octodon_degus
ENSLACG00000013955	NCBP1	99	78.358	ENSONIG00000001502	NCBP1	99	77.958	Oreochromis_niloticus
ENSLACG00000013955	NCBP1	76	86.601	ENSOANG00000001918	NCBP1	98	86.601	Ornithorhynchus_anatinus
ENSLACG00000013955	NCBP1	98	79.494	ENSOCUG00000013853	NCBP1	97	80.000	Oryctolagus_cuniculus
ENSLACG00000013955	NCBP1	99	77.488	ENSORLG00000011008	NCBP1	99	77.516	Oryzias_latipes
ENSLACG00000013955	NCBP1	99	77.736	ENSORLG00020017455	NCBP1	99	77.295	Oryzias_latipes_hni
ENSLACG00000013955	NCBP1	99	77.612	ENSORLG00015012127	NCBP1	99	77.640	Oryzias_latipes_hsok
ENSLACG00000013955	NCBP1	99	77.985	ENSOMEG00000020698	NCBP1	99	77.888	Oryzias_melastigma
ENSLACG00000013955	NCBP1	100	79.975	ENSOGAG00000013888	NCBP1	100	80.473	Otolemur_garnettii
ENSLACG00000013955	NCBP1	100	79.353	ENSOARG00000011233	NCBP1	100	79.851	Ovis_aries
ENSLACG00000013955	NCBP1	100	79.851	ENSPPAG00000026462	NCBP1	100	80.348	Pan_paniscus
ENSLACG00000013955	NCBP1	100	79.975	ENSPPRG00000022574	NCBP1	100	80.473	Panthera_pardus
ENSLACG00000013955	NCBP1	100	79.975	ENSPTIG00000018507	NCBP1	100	80.473	Panthera_tigris_altaica
ENSLACG00000013955	NCBP1	100	79.851	ENSPTRG00000021167	NCBP1	100	80.348	Pan_troglodytes
ENSLACG00000013955	NCBP1	100	79.851	ENSPANG00000025591	NCBP1	100	80.348	Papio_anubis
ENSLACG00000013955	NCBP1	100	76.398	ENSPKIG00000015861	NCBP1	100	76.617	Paramormyrops_kingsleyae
ENSLACG00000013955	NCBP1	65	77.586	ENSPSIG00000009558	NCBP1	100	78.613	Pelodiscus_sinensis
ENSLACG00000013955	NCBP1	99	74.566	ENSPMGG00000020476	NCBP1	99	74.442	Periophthalmus_magnuspinnatus
ENSLACG00000013955	NCBP1	100	78.856	ENSPEMG00000020105	Ncbp1	100	79.353	Peromyscus_maniculatus_bairdii
ENSLACG00000013955	NCBP1	100	62.255	ENSPMAG00000005533	NCBP1	100	61.765	Petromyzon_marinus
ENSLACG00000013955	NCBP1	100	78.358	ENSPCIG00000015800	NCBP1	99	82.096	Phascolarctos_cinereus
ENSLACG00000013955	NCBP1	99	78.012	ENSPFOG00000004158	NCBP1	99	77.640	Poecilia_formosa
ENSLACG00000013955	NCBP1	99	77.764	ENSPLAG00000020002	NCBP1	99	77.210	Poecilia_latipinna
ENSLACG00000013955	NCBP1	99	77.888	ENSPMEG00000019821	NCBP1	99	77.335	Poecilia_mexicana
ENSLACG00000013955	NCBP1	99	77.363	ENSPREG00000006035	NCBP1	99	77.460	Poecilia_reticulata
ENSLACG00000013955	NCBP1	100	79.851	ENSPPYG00000019426	NCBP1	100	80.348	Pongo_abelii
ENSLACG00000013955	NCBP1	85	90.345	ENSPCAG00000009943	NCBP1	85	90.345	Procavia_capensis
ENSLACG00000013955	NCBP1	82	89.474	ENSPCOG00000020024	NCBP1	98	89.474	Propithecus_coquereli
ENSLACG00000013955	NCBP1	100	79.851	ENSPVAG00000005924	NCBP1	100	80.348	Pteropus_vampyrus
ENSLACG00000013955	NCBP1	90	76.997	ENSPNYG00000002140	NCBP1	99	76.997	Pundamilia_nyererei
ENSLACG00000013955	NCBP1	99	76.741	ENSPNAG00000027753	NCBP1	99	76.741	Pygocentrus_nattereri
ENSLACG00000013955	NCBP1	100	79.229	ENSRNOG00000023605	Ncbp1	100	79.726	Rattus_norvegicus
ENSLACG00000013955	NCBP1	100	79.851	ENSRBIG00000043175	NCBP1	100	80.348	Rhinopithecus_bieti
ENSLACG00000013955	NCBP1	100	79.851	ENSRROG00000029767	NCBP1	100	80.348	Rhinopithecus_roxellana
ENSLACG00000013955	NCBP1	100	79.851	ENSSBOG00000019378	NCBP1	98	89.078	Saimiri_boliviensis_boliviensis
ENSLACG00000013955	NCBP1	98	52.250	ENSSHAG00000015882	NCBP1	72	70.526	Sarcophilus_harrisii
ENSLACG00000013955	NCBP1	98	77.089	ENSSFOG00015001872	NCBP1	99	76.738	Scleropages_formosus
ENSLACG00000013955	NCBP1	99	77.736	ENSSMAG00000007463	NCBP1	99	77.460	Scophthalmus_maximus
ENSLACG00000013955	NCBP1	99	78.580	ENSSDUG00000007019	NCBP1	99	78.580	Seriola_dumerili
ENSLACG00000013955	NCBP1	99	78.731	ENSSLDG00000021924	NCBP1	99	78.331	Seriola_lalandi_dorsalis
ENSLACG00000013955	NCBP1	85	67.442	ENSSARG00000007274	NCBP1	87	67.660	Sorex_araneus
ENSLACG00000013955	NCBP1	100	73.639	ENSSPUG00000008609	NCBP1	100	73.267	Sphenodon_punctatus
ENSLACG00000013955	NCBP1	99	78.856	ENSSPAG00000012550	NCBP1	99	78.456	Stegastes_partitus
ENSLACG00000013955	NCBP1	100	79.851	ENSSSCG00000005366	NCBP1	100	80.348	Sus_scrofa
ENSLACG00000013955	NCBP1	100	76.208	ENSTGUG00000001472	NCBP1	100	76.617	Taeniopygia_guttata
ENSLACG00000013955	NCBP1	99	77.363	ENSTRUG00000005287	NCBP1	99	76.961	Takifugu_rubripes
ENSLACG00000013955	NCBP1	100	77.612	ENSTBEG00000004035	NCBP1	100	78.109	Tupaia_belangeri
ENSLACG00000013955	NCBP1	88	83.415	ENSTTRG00000000507	NCBP1	88	83.415	Tursiops_truncatus
ENSLACG00000013955	NCBP1	100	79.851	ENSUAMG00000005471	NCBP1	100	80.348	Ursus_americanus
ENSLACG00000013955	NCBP1	97	78.617	ENSUMAG00000011865	NCBP1	100	80.719	Ursus_maritimus
ENSLACG00000013955	NCBP1	100	76.244	ENSVPAG00000010537	NCBP1	100	76.741	Vicugna_pacos
ENSLACG00000013955	NCBP1	100	79.975	ENSVVUG00000019725	NCBP1	100	80.473	Vulpes_vulpes
ENSLACG00000013955	NCBP1	100	74.938	ENSXETG00000010179	ncbp1	100	74.690	Xenopus_tropicalis
ENSLACG00000013955	NCBP1	99	78.012	ENSXMAG00000018253	NCBP1	99	77.460	Xiphophorus_maculatus