EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000014160 (Gene tree)
Gene ID: 102350221
Gene Symbol: srsf1a
Alias: sfrs1a|sfrs1l|wu:fb52g10|wu:fb97g12|zgc:66146
Full Name: serine and arginine rich splicing factor 1
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 5148 bases
Position: chrJH126574.1:974171-979318
Accession: 102350221
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000016076	RRM_1	PF00076.22	1.8e-33	1	2
ENSLACP00000016076	RRM_1	PF00076.22	1.8e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000016187	-	1182	XM_005987449	ENSLACP00000016076	266 (aa)	-	H3B2F5

Gene Model

Click here to download ENSLACG00000014160's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm03040	Spliceosome	KEGG
lcm05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000014160's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000014160	srsf1a	69	31.707	ENSLACG00000006343	zgc:77262	52	31.646
ENSLACG00000014160	srsf1a	62	43.931	ENSLACG00000017874	-	78	38.095
ENSLACG00000014160	srsf1a	76	45.283	ENSLACG00000005874	SRSF5	75	45.327
ENSLACG00000014160	srsf1a	61	44.571	ENSLACG00000005466	SRSF6	50	43.429
ENSLACG00000014160	srsf1a	86	64.783	ENSLACG00000018228	SRSF9	79	76.111

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000014160	srsf1a	92	93.878	ENSG00000136450	SRSF1	95	100.000	Homo_sapiens
ENSLACG00000014160	srsf1a	72	90.625	ENSAPOG00000002748	-	78	90.625	Acanthochromis_polyacanthus
ENSLACG00000014160	srsf1a	73	87.500	ENSAPOG00000008542	-	80	87.500	Acanthochromis_polyacanthus
ENSLACG00000014160	srsf1a	92	95.492	ENSAMEG00000002635	SRSF1	99	95.492	Ailuropoda_melanoleuca
ENSLACG00000014160	srsf1a	72	88.542	ENSACIG00000008091	srsf1a	83	88.542	Amphilophus_citrinellus
ENSLACG00000014160	srsf1a	73	87.500	ENSAOCG00000000337	-	81	87.500	Amphiprion_ocellaris
ENSLACG00000014160	srsf1a	72	90.104	ENSAOCG00000010671	-	83	90.104	Amphiprion_ocellaris
ENSLACG00000014160	srsf1a	73	87.500	ENSAPEG00000023352	-	79	87.500	Amphiprion_percula
ENSLACG00000014160	srsf1a	72	90.104	ENSAPEG00000009915	-	83	90.104	Amphiprion_percula
ENSLACG00000014160	srsf1a	74	85.859	ENSATEG00000021567	-	79	88.021	Anabas_testudineus
ENSLACG00000014160	srsf1a	72	90.104	ENSATEG00000022403	-	77	90.104	Anabas_testudineus
ENSLACG00000014160	srsf1a	92	96.735	ENSACAG00000005542	-	99	96.735	Anolis_carolinensis
ENSLACG00000014160	srsf1a	92	93.878	ENSANAG00000020583	-	95	98.551	Aotus_nancymaae
ENSLACG00000014160	srsf1a	74	67.347	ENSANAG00000025417	-	73	66.839	Aotus_nancymaae
ENSLACG00000014160	srsf1a	50	79.355	ENSAMXG00000024373	-	72	79.355	Astyanax_mexicanus
ENSLACG00000014160	srsf1a	88	90.795	ENSAMXG00000035996	srsf1a	79	90.500	Astyanax_mexicanus
ENSLACG00000014160	srsf1a	92	93.878	ENSBTAG00000014766	SRSF1	78	94.845	Bos_taurus
ENSLACG00000014160	srsf1a	92	93.878	ENSCJAG00000041713	-	95	98.551	Callithrix_jacchus
ENSLACG00000014160	srsf1a	73	86.598	ENSCJAG00000008111	-	86	87.629	Callithrix_jacchus
ENSLACG00000014160	srsf1a	92	93.878	ENSCAFG00000017430	SRSF1	77	94.845	Canis_familiaris
ENSLACG00000014160	srsf1a	92	93.878	ENSCAFG00020025632	-	77	94.845	Canis_lupus_dingo
ENSLACG00000014160	srsf1a	73	93.299	ENSCHIG00000010787	SRSF1	78	94.845	Capra_hircus
ENSLACG00000014160	srsf1a	92	93.878	ENSTSYG00000013899	-	95	98.551	Carlito_syrichta
ENSLACG00000014160	srsf1a	92	93.878	ENSCPOG00000032681	-	78	94.845	Cavia_porcellus
ENSLACG00000014160	srsf1a	92	93.878	ENSCCAG00000029484	-	95	98.551	Cebus_capucinus
ENSLACG00000014160	srsf1a	92	93.878	ENSCATG00000042294	-	95	98.551	Cercocebus_atys
ENSLACG00000014160	srsf1a	92	93.878	ENSCLAG00000014707	-	78	94.845	Chinchilla_lanigera
ENSLACG00000014160	srsf1a	92	93.061	ENSCSAG00000005642	-	77	93.814	Chlorocebus_sabaeus
ENSLACG00000014160	srsf1a	73	93.299	ENSCHOG00000001899	SRSF1	78	94.845	Choloepus_hoffmanni
ENSLACG00000014160	srsf1a	92	97.143	ENSCPBG00000009851	-	99	97.143	Chrysemys_picta_bellii
ENSLACG00000014160	srsf1a	92	93.878	ENSCANG00000029726	-	95	98.551	Colobus_angolensis_palliatus
ENSLACG00000014160	srsf1a	92	93.878	ENSCGRG00001000670	Srsf1	77	94.845	Cricetulus_griseus_chok1gshd
ENSLACG00000014160	srsf1a	92	93.878	ENSCGRG00000005590	Srsf1	78	94.845	Cricetulus_griseus_crigri
ENSLACG00000014160	srsf1a	72	81.818	ENSCSEG00000009973	-	80	81.818	Cynoglossus_semilaevis
ENSLACG00000014160	srsf1a	72	89.583	ENSCSEG00000014272	-	81	88.021	Cynoglossus_semilaevis
ENSLACG00000014160	srsf1a	72	87.179	ENSCVAG00000005458	-	91	86.413	Cyprinodon_variegatus
ENSLACG00000014160	srsf1a	72	90.104	ENSCVAG00000018617	-	78	90.104	Cyprinodon_variegatus
ENSLACG00000014160	srsf1a	73	88.235	ENSDARG00000057691	srsf1a	99	87.500	Danio_rerio
ENSLACG00000014160	srsf1a	73	94.330	ENSDARG00000017843	srsf1b	80	94.872	Danio_rerio
ENSLACG00000014160	srsf1a	92	93.878	ENSDNOG00000011737	-	77	94.845	Dasypus_novemcinctus
ENSLACG00000014160	srsf1a	92	93.878	ENSDORG00000015082	Srsf1	78	94.845	Dipodomys_ordii
ENSLACG00000014160	srsf1a	68	88.950	ENSETEG00000005349	-	62	90.608	Echinops_telfairi
ENSLACG00000014160	srsf1a	92	93.878	ENSEASG00005002922	-	77	94.845	Equus_asinus_asinus
ENSLACG00000014160	srsf1a	73	93.299	ENSECAG00000016654	SRSF1	78	94.845	Equus_caballus
ENSLACG00000014160	srsf1a	68	90.055	ENSEEUG00000009255	-	62	91.713	Erinaceus_europaeus
ENSLACG00000014160	srsf1a	73	92.228	ENSELUG00000021646	srsf1a	77	91.753	Esox_lucius
ENSLACG00000014160	srsf1a	92	93.878	ENSFCAG00000002250	-	90	91.713	Felis_catus
ENSLACG00000014160	srsf1a	71	100.000	ENSFALG00000005062	-	77	74.742	Ficedula_albicollis
ENSLACG00000014160	srsf1a	92	93.878	ENSFDAG00000010646	-	78	94.845	Fukomys_damarensis
ENSLACG00000014160	srsf1a	72	90.104	ENSFHEG00000003174	srsf1a	83	90.104	Fundulus_heteroclitus
ENSLACG00000014160	srsf1a	85	86.344	ENSGMOG00000014787	-	80	88.021	Gadus_morhua
ENSLACG00000014160	srsf1a	92	97.143	ENSGALG00000005525	SRSF1	99	97.143	Gallus_gallus
ENSLACG00000014160	srsf1a	73	86.528	ENSGACG00000020621	srsf1b	78	85.492	Gasterosteus_aculeatus
ENSLACG00000014160	srsf1a	91	97.119	ENSGAGG00000022965	-	96	97.119	Gopherus_agassizii
ENSLACG00000014160	srsf1a	92	93.878	ENSGGOG00000004386	SRSF1	95	98.551	Gorilla_gorilla
ENSLACG00000014160	srsf1a	72	88.542	ENSHBUG00000016788	srsf1a	84	84.804	Haplochromis_burtoni
ENSLACG00000014160	srsf1a	61	92.073	ENSHGLG00000000600	-	76	93.902	Heterocephalus_glaber_female
ENSLACG00000014160	srsf1a	61	92.073	ENSHGLG00000000669	-	76	93.902	Heterocephalus_glaber_female
ENSLACG00000014160	srsf1a	92	93.878	ENSHGLG00100016906	-	78	94.845	Heterocephalus_glaber_male
ENSLACG00000014160	srsf1a	72	83.249	ENSHCOG00000018918	srsf1a	77	84.772	Hippocampus_comes
ENSLACG00000014160	srsf1a	88	89.212	ENSIPUG00000017039	srsf1a	79	91.457	Ictalurus_punctatus
ENSLACG00000014160	srsf1a	73	94.359	ENSIPUG00000008750	srsf1b	80	94.359	Ictalurus_punctatus
ENSLACG00000014160	srsf1a	92	93.878	ENSSTOG00000000243	-	91	91.713	Ictidomys_tridecemlineatus
ENSLACG00000014160	srsf1a	92	93.878	ENSJJAG00000000102	-	78	94.845	Jaculus_jaculus
ENSLACG00000014160	srsf1a	72	89.062	ENSKMAG00000019232	srsf1a	78	89.062	Kryptolebias_marmoratus
ENSLACG00000014160	srsf1a	72	91.146	ENSLBEG00000020864	-	83	91.146	Labrus_bergylta
ENSLACG00000014160	srsf1a	73	84.264	ENSLBEG00000015294	-	79	84.772	Labrus_bergylta
ENSLACG00000014160	srsf1a	73	96.373	ENSLOCG00000005994	srsf1a	99	96.311	Lepisosteus_oculatus
ENSLACG00000014160	srsf1a	92	90.984	ENSLAFG00000025743	SRSF1	99	90.984	Loxodonta_africana
ENSLACG00000014160	srsf1a	92	93.878	ENSMFAG00000040003	-	95	98.551	Macaca_fascicularis
ENSLACG00000014160	srsf1a	92	91.020	ENSMMUG00000003260	-	93	89.119	Macaca_mulatta
ENSLACG00000014160	srsf1a	92	93.878	ENSMMUG00000004725	SRSF1	95	98.551	Macaca_mulatta
ENSLACG00000014160	srsf1a	92	93.878	ENSMNEG00000027680	-	95	98.551	Macaca_nemestrina
ENSLACG00000014160	srsf1a	92	90.612	ENSMNEG00000015983	-	77	91.237	Macaca_nemestrina
ENSLACG00000014160	srsf1a	92	89.754	ENSMLEG00000015243	-	76	91.192	Mandrillus_leucophaeus
ENSLACG00000014160	srsf1a	73	93.299	ENSMLEG00000040509	SRSF1	78	94.845	Mandrillus_leucophaeus
ENSLACG00000014160	srsf1a	72	90.104	ENSMAMG00000018454	-	78	90.104	Mastacembelus_armatus
ENSLACG00000014160	srsf1a	73	86.528	ENSMAMG00000019687	-	78	86.528	Mastacembelus_armatus
ENSLACG00000014160	srsf1a	73	92.228	ENSMAMG00000019691	-	80	92.228	Mastacembelus_armatus
ENSLACG00000014160	srsf1a	92	93.878	ENSMAUG00000021845	Srsf1	78	94.845	Mesocricetus_auratus
ENSLACG00000014160	srsf1a	92	93.878	ENSMICG00000013639	-	95	98.551	Microcebus_murinus
ENSLACG00000014160	srsf1a	92	93.878	ENSMOCG00000001996	Srsf1	78	94.845	Microtus_ochrogaster
ENSLACG00000014160	srsf1a	72	90.625	ENSMMOG00000014354	srsf1a	83	90.625	Mola_mola
ENSLACG00000014160	srsf1a	68	91.758	ENSMODG00000014781	-	62	92.857	Monodelphis_domestica
ENSLACG00000014160	srsf1a	75	77.000	ENSMALG00000007763	-	78	80.311	Monopterus_albus
ENSLACG00000014160	srsf1a	73	88.660	ENSMALG00000017129	-	75	89.583	Monopterus_albus
ENSLACG00000014160	srsf1a	92	93.878	MGP_CAROLIEiJ_G0016943	Srsf1	90	91.713	Mus_caroli
ENSLACG00000014160	srsf1a	92	93.878	ENSMUSG00000018379	Srsf1	90	91.713	Mus_musculus
ENSLACG00000014160	srsf1a	92	93.878	MGP_PahariEiJ_G0018074	Srsf1	78	94.845	Mus_pahari
ENSLACG00000014160	srsf1a	92	93.878	MGP_SPRETEiJ_G0017790	Srsf1	90	91.713	Mus_spretus
ENSLACG00000014160	srsf1a	73	93.299	ENSMPUG00000015369	SRSF1	78	94.845	Mustela_putorius_furo
ENSLACG00000014160	srsf1a	73	93.299	ENSMLUG00000011040	SRSF1	78	94.845	Myotis_lucifugus
ENSLACG00000014160	srsf1a	75	86.935	ENSMLUG00000023995	-	78	86.528	Myotis_lucifugus
ENSLACG00000014160	srsf1a	73	93.299	ENSNGAG00000011395	Srsf1	78	94.845	Nannospalax_galili
ENSLACG00000014160	srsf1a	92	79.918	ENSNBRG00000008041	srsf1b	78	82.383	Neolamprologus_brichardi
ENSLACG00000014160	srsf1a	92	93.878	ENSNLEG00000008088	-	95	98.551	Nomascus_leucogenys
ENSLACG00000014160	srsf1a	92	93.878	ENSODEG00000011481	-	79	93.401	Octodon_degus
ENSLACG00000014160	srsf1a	72	88.542	ENSONIG00000013160	-	77	88.542	Oreochromis_niloticus
ENSLACG00000014160	srsf1a	88	89.270	ENSONIG00000004860	-	79	92.228	Oreochromis_niloticus
ENSLACG00000014160	srsf1a	91	70.445	ENSOCUG00000010894	-	75	72.632	Oryctolagus_cuniculus
ENSLACG00000014160	srsf1a	72	90.104	ENSORLG00000004580	srsf1a	78	90.104	Oryzias_latipes
ENSLACG00000014160	srsf1a	72	90.104	ENSORLG00020009456	srsf1a	83	90.104	Oryzias_latipes_hni
ENSLACG00000014160	srsf1a	72	90.104	ENSORLG00015014384	srsf1a	83	90.104	Oryzias_latipes_hsok
ENSLACG00000014160	srsf1a	66	88.000	ENSOMEG00000004106	srsf1a	71	88.000	Oryzias_melastigma
ENSLACG00000014160	srsf1a	77	91.220	ENSOGAG00000025950	-	78	94.845	Otolemur_garnettii
ENSLACG00000014160	srsf1a	92	93.033	ENSOARG00000008323	SRSF1	99	93.033	Ovis_aries
ENSLACG00000014160	srsf1a	92	93.878	ENSPPAG00000043403	-	95	98.551	Pan_paniscus
ENSLACG00000014160	srsf1a	92	93.878	ENSPPRG00000004238	-	90	91.713	Panthera_pardus
ENSLACG00000014160	srsf1a	92	93.878	ENSPTRG00000049077	SRSF1	95	98.551	Pan_troglodytes
ENSLACG00000014160	srsf1a	92	93.878	ENSPANG00000022305	-	95	98.551	Papio_anubis
ENSLACG00000014160	srsf1a	91	74.380	ENSPANG00000030275	-	73	68.229	Papio_anubis
ENSLACG00000014160	srsf1a	73	94.819	ENSPKIG00000012857	srsf1b	79	94.819	Paramormyrops_kingsleyae
ENSLACG00000014160	srsf1a	73	93.782	ENSPKIG00000007204	srsf1a	84	94.330	Paramormyrops_kingsleyae
ENSLACG00000014160	srsf1a	73	87.245	ENSPSIG00000009000	-	78	88.776	Pelodiscus_sinensis
ENSLACG00000014160	srsf1a	72	88.021	ENSPMGG00000013112	-	82	86.458	Periophthalmus_magnuspinnatus
ENSLACG00000014160	srsf1a	88	85.043	ENSPMGG00000005467	-	78	84.896	Periophthalmus_magnuspinnatus
ENSLACG00000014160	srsf1a	92	93.878	ENSPEMG00000021416	Srsf1	78	94.845	Peromyscus_maniculatus_bairdii
ENSLACG00000014160	srsf1a	73	93.846	ENSPCIG00000006076	-	78	94.872	Phascolarctos_cinereus
ENSLACG00000014160	srsf1a	76	85.294	ENSPFOG00000018325	-	72	85.000	Poecilia_formosa
ENSLACG00000014160	srsf1a	74	87.374	ENSPLAG00000008416	srsf1b	79	86.667	Poecilia_latipinna
ENSLACG00000014160	srsf1a	74	87.374	ENSPMEG00000002388	-	79	86.667	Poecilia_mexicana
ENSLACG00000014160	srsf1a	72	90.104	ENSPREG00000009667	srsf1a	78	90.104	Poecilia_reticulata
ENSLACG00000014160	srsf1a	92	93.878	ENSPPYG00000008240	SRSF1	78	94.845	Pongo_abelii
ENSLACG00000014160	srsf1a	73	93.299	ENSPCAG00000005199	SRSF1	78	94.845	Procavia_capensis
ENSLACG00000014160	srsf1a	92	93.878	ENSPCOG00000023654	-	95	98.551	Propithecus_coquereli
ENSLACG00000014160	srsf1a	73	75.377	ENSPCOG00000025736	-	93	75.000	Propithecus_coquereli
ENSLACG00000014160	srsf1a	69	100.000	ENSPVAG00000000519	-	74	100.000	Pteropus_vampyrus
ENSLACG00000014160	srsf1a	73	91.710	ENSPNAG00000014601	srsf1b	78	91.710	Pygocentrus_nattereri
ENSLACG00000014160	srsf1a	88	92.275	ENSPNAG00000022241	srsf1a	79	91.753	Pygocentrus_nattereri
ENSLACG00000014160	srsf1a	73	93.299	ENSRNOG00000050323	Srsf1	78	94.845	Rattus_norvegicus
ENSLACG00000014160	srsf1a	92	93.878	ENSRBIG00000034445	-	95	98.551	Rhinopithecus_bieti
ENSLACG00000014160	srsf1a	92	93.878	ENSRROG00000041506	-	95	98.551	Rhinopithecus_roxellana
ENSLACG00000014160	srsf1a	92	93.878	ENSSBOG00000025377	-	95	98.551	Saimiri_boliviensis_boliviensis
ENSLACG00000014160	srsf1a	73	93.846	ENSSHAG00000002552	-	78	94.872	Sarcophilus_harrisii
ENSLACG00000014160	srsf1a	73	95.855	ENSSFOG00015004800	srsf1a	79	94.388	Scleropages_formosus
ENSLACG00000014160	srsf1a	86	86.076	ENSSMAG00000009719	-	79	84.577	Scophthalmus_maximus
ENSLACG00000014160	srsf1a	72	91.667	ENSSMAG00000007018	-	78	91.667	Scophthalmus_maximus
ENSLACG00000014160	srsf1a	92	75.403	ENSSDUG00000003929	-	82	82.234	Seriola_dumerili
ENSLACG00000014160	srsf1a	72	91.146	ENSSDUG00000011303	-	83	91.146	Seriola_dumerili
ENSLACG00000014160	srsf1a	87	75.862	ENSSLDG00000016895	-	77	84.699	Seriola_lalandi_dorsalis
ENSLACG00000014160	srsf1a	72	91.146	ENSSLDG00000010543	-	78	91.146	Seriola_lalandi_dorsalis
ENSLACG00000014160	srsf1a	73	81.347	ENSSLDG00000016868	-	77	82.474	Seriola_lalandi_dorsalis
ENSLACG00000014160	srsf1a	68	90.055	ENSSARG00000010949	-	62	91.713	Sorex_araneus
ENSLACG00000014160	srsf1a	91	97.119	ENSSPUG00000000804	-	96	97.119	Sphenodon_punctatus
ENSLACG00000014160	srsf1a	72	89.583	ENSSPAG00000022562	-	78	89.583	Stegastes_partitus
ENSLACG00000014160	srsf1a	73	84.466	ENSSPAG00000014152	-	79	84.878	Stegastes_partitus
ENSLACG00000014160	srsf1a	92	93.878	ENSSSCG00000017626	-	78	94.845	Sus_scrofa
ENSLACG00000014160	srsf1a	50	92.481	ENSTGUG00000008416	-	72	94.737	Taeniopygia_guttata
ENSLACG00000014160	srsf1a	72	89.583	ENSTRUG00000003691	srsf1a	78	89.583	Takifugu_rubripes
ENSLACG00000014160	srsf1a	72	89.583	ENSTNIG00000016223	srsf1a	77	89.583	Tetraodon_nigroviridis
ENSLACG00000014160	srsf1a	68	91.160	ENSTBEG00000015378	-	62	92.265	Tupaia_belangeri
ENSLACG00000014160	srsf1a	73	93.299	ENSUAMG00000009858	SRSF1	78	94.845	Ursus_americanus
ENSLACG00000014160	srsf1a	92	93.878	ENSUMAG00000000455	-	77	94.845	Ursus_maritimus
ENSLACG00000014160	srsf1a	73	92.784	ENSVPAG00000010094	SRSF1	78	94.330	Vicugna_pacos
ENSLACG00000014160	srsf1a	92	93.878	ENSVVUG00000011882	-	77	94.845	Vulpes_vulpes
ENSLACG00000014160	srsf1a	80	85.377	ENSXETG00000008954	srsf1	80	86.385	Xenopus_tropicalis
ENSLACG00000014160	srsf1a	72	90.104	ENSXMAG00000011766	srsf1a	78	90.104	Xiphophorus_maculatus