EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000014793 (Gene tree)
Gene ID: 102346247
Gene Symbol: SRRM1
Alias: MGC39488|POP101|SRM160
Full Name: serine and arginine repetitive matrix 1
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 38986 bases
Position: chrJH126592.1:1102432-1141417
Accession: 102346247
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000016797	PWI	PF01480.17	2.6e-29	1	1
ENSLACP00000016796	PWI	PF01480.17	2.7e-29	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000016915	SRRM1-202	2775	-	ENSLACP00000016797	924 (aa)	-	H3B4H6
ENSLACT00000016914	SRRM1-201	4092	XM_005988751	ENSLACP00000016796	923 (aa)	XP_005988813	H3B4H5

Gene Model

Click here to download ENSLACG00000014793's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm03013	RNA transport	KEGG
lcm03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000014793's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000014793	SRRM1	53	64.205	ENSCHOG00000000027	SRRM1	51	57.732	Choloepus_hoffmanni
ENSLACG00000014793	SRRM1	53	67.296	ENSPCAG00000015138	SRRM1	54	62.813	Procavia_capensis
ENSLACG00000014793	SRRM1	57	69.124	ENSSHAG00000011061	SRRM1	53	78.571	Sarcophilus_harrisii
ENSLACG00000014793	SRRM1	61	65.409	ENSSARG00000013718	SRRM1	63	63.125	Sorex_araneus