EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000014832 (Gene tree)
Gene ID: 102350600
Gene Symbol: SF3B1
Alias: Hsh155|PRPF10|Prp10|SAP155|SF3b155
Full Name: splicing factor 3b subunit 1
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Minus strand
Length: 43642 bases
Position: chrJH126606.1:1109883-1153524
Accession: 102350600
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000016839	SF3b1	PF08920.10	4.2e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000016958	SF3B1-201	7758	XM_005989523	ENSLACP00000016839	1308 (aa)	XP_005989585	H3B4L8

Gene Model

Click here to download ENSLACG00000014832's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000014832's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000014832	SF3B1	99	92.490	ENSG00000115524	SF3B1	99	92.490	Homo_sapiens
ENSLACG00000014832	SF3B1	99	90.549	ENSAPOG00000011894	sf3b1	99	90.418	Acanthochromis_polyacanthus
ENSLACG00000014832	SF3B1	99	91.945	ENSAMEG00000013809	SF3B1	100	91.945	Ailuropoda_melanoleuca
ENSLACG00000014832	SF3B1	99	90.389	ENSACIG00000020910	sf3b1	96	90.389	Amphilophus_citrinellus
ENSLACG00000014832	SF3B1	99	90.418	ENSAOCG00000004478	sf3b1	99	90.418	Amphiprion_ocellaris
ENSLACG00000014832	SF3B1	99	90.418	ENSAPEG00000012937	sf3b1	99	90.418	Amphiprion_percula
ENSLACG00000014832	SF3B1	99	90.473	ENSATEG00000020435	sf3b1	99	90.396	Anabas_testudineus
ENSLACG00000014832	SF3B1	99	92.715	ENSAPLG00000003993	SF3B1	99	92.715	Anas_platyrhynchos
ENSLACG00000014832	SF3B1	99	92.107	ENSACAG00000009612	SF3B1	99	92.184	Anolis_carolinensis
ENSLACG00000014832	SF3B1	99	92.490	ENSANAG00000021577	SF3B1	100	93.499	Aotus_nancymaae
ENSLACG00000014832	SF3B1	99	89.658	ENSACLG00000023470	sf3b1	99	89.658	Astatotilapia_calliptera
ENSLACG00000014832	SF3B1	99	90.951	ENSAMXG00000002219	sf3b1	99	90.875	Astyanax_mexicanus
ENSLACG00000014832	SF3B1	99	92.414	ENSBTAG00000008915	SF3B1	99	92.414	Bos_taurus
ENSLACG00000014832	SF3B1	98	63.001	WBGene00011605	sftb-1	98	63.177	Caenorhabditis_elegans
ENSLACG00000014832	SF3B1	99	92.490	ENSCJAG00000003902	SF3B1	99	92.490	Callithrix_jacchus
ENSLACG00000014832	SF3B1	99	92.490	ENSCAFG00000010826	SF3B1	99	92.490	Canis_familiaris
ENSLACG00000014832	SF3B1	99	92.490	ENSCAFG00020004750	SF3B1	99	92.490	Canis_lupus_dingo
ENSLACG00000014832	SF3B1	99	92.414	ENSCHIG00000015226	SF3B1	99	92.414	Capra_hircus
ENSLACG00000014832	SF3B1	99	92.414	ENSTSYG00000009214	SF3B1	99	92.414	Carlito_syrichta
ENSLACG00000014832	SF3B1	99	92.490	ENSCAPG00000006547	SF3B1	99	92.490	Cavia_aperea
ENSLACG00000014832	SF3B1	99	92.490	ENSCPOG00000009353	SF3B1	100	92.490	Cavia_porcellus
ENSLACG00000014832	SF3B1	99	92.490	ENSCCAG00000020506	SF3B1	99	92.490	Cebus_capucinus
ENSLACG00000014832	SF3B1	99	92.490	ENSCATG00000035735	SF3B1	99	92.490	Cercocebus_atys
ENSLACG00000014832	SF3B1	100	91.945	ENSCLAG00000014767	SF3B1	99	91.945	Chinchilla_lanigera
ENSLACG00000014832	SF3B1	99	92.490	ENSCSAG00000011505	SF3B1	99	92.490	Chlorocebus_sabaeus
ENSLACG00000014832	SF3B1	75	90.385	ENSCHOG00000009860	SF3B1	75	90.385	Choloepus_hoffmanni
ENSLACG00000014832	SF3B1	99	92.331	ENSCPBG00000021902	SF3B1	99	93.272	Chrysemys_picta_bellii
ENSLACG00000014832	SF3B1	68	74.645	ENSCING00000002558	-	100	74.645	Ciona_intestinalis
ENSLACG00000014832	SF3B1	99	78.005	ENSCSAVG00000002559	-	99	77.938	Ciona_savignyi
ENSLACG00000014832	SF3B1	99	92.490	ENSCANG00000029415	SF3B1	99	92.490	Colobus_angolensis_palliatus
ENSLACG00000014832	SF3B1	99	92.490	ENSCGRG00001016990	Sf3b1	99	92.490	Cricetulus_griseus_chok1gshd
ENSLACG00000014832	SF3B1	99	92.490	ENSCGRG00000005301	Sf3b1	99	92.490	Cricetulus_griseus_crigri
ENSLACG00000014832	SF3B1	99	87.347	ENSCSEG00000003860	sf3b1	99	87.050	Cynoglossus_semilaevis
ENSLACG00000014832	SF3B1	95	90.269	ENSCVAG00000003680	sf3b1	99	90.190	Cyprinodon_variegatus
ENSLACG00000014832	SF3B1	99	89.653	ENSDARG00000056138	sf3b1	99	89.728	Danio_rerio
ENSLACG00000014832	SF3B1	99	92.420	ENSDNOG00000011754	SF3B1	99	92.420	Dasypus_novemcinctus
ENSLACG00000014832	SF3B1	99	90.345	ENSDORG00000002399	Sf3b1	99	90.345	Dipodomys_ordii
ENSLACG00000014832	SF3B1	99	74.170	FBgn0031266	Sf3b1	99	74.170	Drosophila_melanogaster
ENSLACG00000014832	SF3B1	83	91.185	ENSETEG00000009188	SF3B1	100	91.185	Echinops_telfairi
ENSLACG00000014832	SF3B1	99	84.287	ENSEBUG00000004325	sf3b1	100	86.145	Eptatretus_burgeri
ENSLACG00000014832	SF3B1	99	92.414	ENSEASG00005020159	SF3B1	97	92.414	Equus_asinus_asinus
ENSLACG00000014832	SF3B1	99	92.414	ENSECAG00000021657	SF3B1	97	92.414	Equus_caballus
ENSLACG00000014832	SF3B1	87	99.713	ENSEEUG00000000836	SF3B1	81	99.713	Erinaceus_europaeus
ENSLACG00000014832	SF3B1	99	89.947	ENSELUG00000005977	sf3b1	97	89.947	Esox_lucius
ENSLACG00000014832	SF3B1	99	92.490	ENSFCAG00000005038	SF3B1	99	92.490	Felis_catus
ENSLACG00000014832	SF3B1	99	92.638	ENSFALG00000004281	SF3B1	99	92.638	Ficedula_albicollis
ENSLACG00000014832	SF3B1	99	92.490	ENSFDAG00000017510	SF3B1	99	92.490	Fukomys_damarensis
ENSLACG00000014832	SF3B1	99	89.666	ENSFHEG00000014333	sf3b1	99	89.590	Fundulus_heteroclitus
ENSLACG00000014832	SF3B1	99	90.099	ENSGMOG00000006773	sf3b1	99	90.404	Gadus_morhua
ENSLACG00000014832	SF3B1	99	92.715	ENSGALG00000008038	SF3B1	99	92.715	Gallus_gallus
ENSLACG00000014832	SF3B1	98	90.421	ENSGAFG00000000704	sf3b1	99	90.345	Gambusia_affinis
ENSLACG00000014832	SF3B1	99	90.091	ENSGACG00000008839	sf3b1	99	90.396	Gasterosteus_aculeatus
ENSLACG00000014832	SF3B1	99	92.331	ENSGAGG00000017478	SF3B1	99	92.408	Gopherus_agassizii
ENSLACG00000014832	SF3B1	99	87.126	ENSGGOG00000009264	SF3B1	99	87.347	Gorilla_gorilla
ENSLACG00000014832	SF3B1	99	89.718	ENSHBUG00000007705	sf3b1	99	89.718	Haplochromis_burtoni
ENSLACG00000014832	SF3B1	99	92.003	ENSHGLG00000008285	-	99	92.003	Heterocephalus_glaber_female
ENSLACG00000014832	SF3B1	99	90.099	ENSHGLG00100005535	-	99	90.099	Heterocephalus_glaber_male
ENSLACG00000014832	SF3B1	99	90.805	ENSHCOG00000016775	sf3b1	99	90.805	Hippocampus_comes
ENSLACG00000014832	SF3B1	99	91.172	ENSIPUG00000013171	sf3b1	99	91.096	Ictalurus_punctatus
ENSLACG00000014832	SF3B1	99	92.490	ENSSTOG00000011034	SF3B1	99	92.490	Ictidomys_tridecemlineatus
ENSLACG00000014832	SF3B1	99	92.390	ENSJJAG00000010903	Sf3b1	99	92.390	Jaculus_jaculus
ENSLACG00000014832	SF3B1	99	90.646	ENSKMAG00000004009	sf3b1	99	90.646	Kryptolebias_marmoratus
ENSLACG00000014832	SF3B1	99	90.604	ENSLBEG00000022208	sf3b1	99	90.527	Labrus_bergylta
ENSLACG00000014832	SF3B1	99	91.578	ENSLOCG00000003899	sf3b1	99	91.578	Lepisosteus_oculatus
ENSLACG00000014832	SF3B1	99	92.490	ENSLAFG00000001956	SF3B1	99	92.490	Loxodonta_africana
ENSLACG00000014832	SF3B1	99	92.490	ENSMMUG00000022430	SF3B1	99	92.355	Macaca_mulatta
ENSLACG00000014832	SF3B1	99	92.490	ENSMNEG00000042333	SF3B1	100	93.499	Macaca_nemestrina
ENSLACG00000014832	SF3B1	94	87.571	ENSMLEG00000026141	SF3B1	99	87.290	Mandrillus_leucophaeus
ENSLACG00000014832	SF3B1	99	90.570	ENSMAMG00000010241	sf3b1	99	90.570	Mastacembelus_armatus
ENSLACG00000014832	SF3B1	99	89.658	ENSMZEG00005021254	sf3b1	99	89.658	Maylandia_zebra
ENSLACG00000014832	SF3B1	99	92.101	ENSMGAG00000007017	SF3B1	99	92.101	Meleagris_gallopavo
ENSLACG00000014832	SF3B1	99	87.738	ENSMAUG00000009071	Sf3b1	99	87.738	Mesocricetus_auratus
ENSLACG00000014832	SF3B1	99	92.567	ENSMICG00000013879	SF3B1	99	92.567	Microcebus_murinus
ENSLACG00000014832	SF3B1	99	88.276	ENSMOCG00000000455	Sf3b1	99	88.276	Microtus_ochrogaster
ENSLACG00000014832	SF3B1	83	89.762	ENSMMOG00000000475	sf3b1	99	89.671	Mola_mola
ENSLACG00000014832	SF3B1	99	91.954	ENSMODG00000012275	SF3B1	99	91.954	Monodelphis_domestica
ENSLACG00000014832	SF3B1	99	90.722	ENSMALG00000017211	sf3b1	99	90.722	Monopterus_albus
ENSLACG00000014832	SF3B1	99	92.490	MGP_CAROLIEiJ_G0014141	Sf3b1	99	92.490	Mus_caroli
ENSLACG00000014832	SF3B1	99	92.490	ENSMUSG00000025982	Sf3b1	99	92.490	Mus_musculus
ENSLACG00000014832	SF3B1	99	92.490	MGP_SPRETEiJ_G0014947	Sf3b1	99	92.490	Mus_spretus
ENSLACG00000014832	SF3B1	99	92.490	ENSMPUG00000007799	SF3B1	99	92.490	Mustela_putorius_furo
ENSLACG00000014832	SF3B1	99	91.341	ENSMLUG00000000840	SF3B1	99	91.341	Myotis_lucifugus
ENSLACG00000014832	SF3B1	99	92.490	ENSNGAG00000021884	-	99	92.490	Nannospalax_galili
ENSLACG00000014832	SF3B1	99	86.052	ENSNBRG00000015816	sf3b1	99	86.052	Neolamprologus_brichardi
ENSLACG00000014832	SF3B1	99	92.490	ENSNLEG00000006861	SF3B1	99	92.490	Nomascus_leucogenys
ENSLACG00000014832	SF3B1	66	99.681	ENSMEUG00000015848	-	64	99.681	Notamacropus_eugenii
ENSLACG00000014832	SF3B1	99	81.934	ENSOPRG00000008596	SF3B1	99	82.159	Ochotona_princeps
ENSLACG00000014832	SF3B1	99	92.490	ENSODEG00000011153	-	99	92.490	Octodon_degus
ENSLACG00000014832	SF3B1	99	89.658	ENSONIG00000013758	sf3b1	99	89.658	Oreochromis_niloticus
ENSLACG00000014832	SF3B1	82	93.831	ENSOCUG00000012722	-	96	93.831	Oryctolagus_cuniculus
ENSLACG00000014832	SF3B1	99	90.038	ENSORLG00000020219	sf3b1	99	90.038	Oryzias_latipes
ENSLACG00000014832	SF3B1	99	90.038	ENSORLG00020001746	sf3b1	99	90.038	Oryzias_latipes_hni
ENSLACG00000014832	SF3B1	60	89.837	ENSORLG00015001759	sf3b1	92	89.837	Oryzias_latipes_hsok
ENSLACG00000014832	SF3B1	99	90.122	ENSOMEG00000019231	sf3b1	99	90.122	Oryzias_melastigma
ENSLACG00000014832	SF3B1	99	92.414	ENSOARG00000015374	SF3B1	99	92.414	Ovis_aries
ENSLACG00000014832	SF3B1	99	92.490	ENSPPAG00000035007	SF3B1	99	92.490	Pan_paniscus
ENSLACG00000014832	SF3B1	99	92.490	ENSPPRG00000009090	SF3B1	99	92.490	Panthera_pardus
ENSLACG00000014832	SF3B1	99	92.490	ENSPTIG00000021557	SF3B1	99	92.490	Panthera_tigris_altaica
ENSLACG00000014832	SF3B1	99	84.645	ENSPTRG00000012771	SF3B1	99	84.645	Pan_troglodytes
ENSLACG00000014832	SF3B1	99	92.490	ENSPANG00000013417	SF3B1	99	92.490	Papio_anubis
ENSLACG00000014832	SF3B1	99	91.387	ENSPKIG00000000784	sf3b1	99	91.387	Paramormyrops_kingsleyae
ENSLACG00000014832	SF3B1	99	91.258	ENSPSIG00000017222	SF3B1	98	91.334	Pelodiscus_sinensis
ENSLACG00000014832	SF3B1	90	90.472	ENSPMGG00000004330	sf3b1	98	90.472	Periophthalmus_magnuspinnatus
ENSLACG00000014832	SF3B1	99	92.490	ENSPEMG00000010699	Sf3b1	99	92.490	Peromyscus_maniculatus_bairdii
ENSLACG00000014832	SF3B1	99	87.082	ENSPMAG00000001311	sf3b1	99	87.234	Petromyzon_marinus
ENSLACG00000014832	SF3B1	99	91.877	ENSPCIG00000010642	SF3B1	99	91.877	Phascolarctos_cinereus
ENSLACG00000014832	SF3B1	99	90.281	ENSPFOG00000000073	sf3b1	99	90.205	Poecilia_formosa
ENSLACG00000014832	SF3B1	99	90.350	ENSPLAG00000002293	sf3b1	99	90.274	Poecilia_latipinna
ENSLACG00000014832	SF3B1	99	90.350	ENSPMEG00000000446	sf3b1	97	90.274	Poecilia_mexicana
ENSLACG00000014832	SF3B1	99	90.426	ENSPREG00000019652	sf3b1	99	90.350	Poecilia_reticulata
ENSLACG00000014832	SF3B1	99	94.834	ENSPPYG00000013044	SF3B1	95	94.834	Pongo_abelii
ENSLACG00000014832	SF3B1	99	92.337	ENSPCAG00000009292	SF3B1	99	92.337	Procavia_capensis
ENSLACG00000014832	SF3B1	99	92.567	ENSPCOG00000024074	SF3B1	99	92.567	Propithecus_coquereli
ENSLACG00000014832	SF3B1	99	92.490	ENSPVAG00000008302	SF3B1	99	92.490	Pteropus_vampyrus
ENSLACG00000014832	SF3B1	99	89.658	ENSPNYG00000014939	sf3b1	99	89.658	Pundamilia_nyererei
ENSLACG00000014832	SF3B1	99	90.798	ENSPNAG00000008288	sf3b1	99	90.798	Pygocentrus_nattereri
ENSLACG00000014832	SF3B1	99	92.490	ENSRNOG00000013516	Sf3b1	99	92.490	Rattus_norvegicus
ENSLACG00000014832	SF3B1	99	91.865	ENSRBIG00000026096	SF3B1	99	91.988	Rhinopithecus_bieti
ENSLACG00000014832	SF3B1	99	92.490	ENSRROG00000031308	SF3B1	99	92.490	Rhinopithecus_roxellana
ENSLACG00000014832	SF3B1	99	92.490	ENSSBOG00000020080	SF3B1	99	92.490	Saimiri_boliviensis_boliviensis
ENSLACG00000014832	SF3B1	99	91.954	ENSSHAG00000017564	SF3B1	99	91.954	Sarcophilus_harrisii
ENSLACG00000014832	SF3B1	99	91.103	ENSSFOG00015021535	sf3b1	99	91.331	Scleropages_formosus
ENSLACG00000014832	SF3B1	99	90.715	ENSSMAG00000013977	sf3b1	98	90.791	Scophthalmus_maximus
ENSLACG00000014832	SF3B1	99	90.342	ENSSDUG00000017422	sf3b1	99	90.266	Seriola_dumerili
ENSLACG00000014832	SF3B1	99	90.266	ENSSLDG00000019495	sf3b1	99	90.190	Seriola_lalandi_dorsalis
ENSLACG00000014832	SF3B1	75	92.443	ENSSARG00000007016	SF3B1	76	92.443	Sorex_araneus
ENSLACG00000014832	SF3B1	99	92.331	ENSSPUG00000000410	SF3B1	99	92.408	Sphenodon_punctatus
ENSLACG00000014832	SF3B1	99	90.418	ENSSPAG00000010451	sf3b1	98	90.418	Stegastes_partitus
ENSLACG00000014832	SF3B1	89	93.499	ENSSSCG00000016075	SF3B1	100	93.499	Sus_scrofa
ENSLACG00000014832	SF3B1	99	92.715	ENSTGUG00000010553	SF3B1	99	92.715	Taeniopygia_guttata
ENSLACG00000014832	SF3B1	99	90.114	ENSTRUG00000015534	sf3b1	99	90.038	Takifugu_rubripes
ENSLACG00000014832	SF3B1	83	94.938	ENSTBEG00000008714	SF3B1	92	94.829	Tupaia_belangeri
ENSLACG00000014832	SF3B1	92	88.763	ENSTTRG00000003414	SF3B1	92	88.763	Tursiops_truncatus
ENSLACG00000014832	SF3B1	94	86.808	ENSUAMG00000018506	SF3B1	98	96.888	Ursus_americanus
ENSLACG00000014832	SF3B1	99	92.490	ENSUMAG00000020945	SF3B1	99	92.490	Ursus_maritimus
ENSLACG00000014832	SF3B1	99	84.969	ENSVPAG00000005798	SF3B1	99	84.816	Vicugna_pacos
ENSLACG00000014832	SF3B1	99	92.490	ENSVVUG00000025948	SF3B1	94	92.490	Vulpes_vulpes
ENSLACG00000014832	SF3B1	99	90.881	ENSXETG00000013339	sf3b1	99	91.034	Xenopus_tropicalis
ENSLACG00000014832	SF3B1	99	86.433	ENSXCOG00000018086	sf3b1	99	86.585	Xiphophorus_couchianus
ENSLACG00000014832	SF3B1	99	90.350	ENSXMAG00000007369	sf3b1	99	90.454	Xiphophorus_maculatus