EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000014885 (Gene tree)
Gene ID: 102352944
Gene Symbol: TRUB1
Alias: PUS4
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Minus strand
Length: 37170 bases
Position: chrJH126814.1:1122677-1159846
Accession: 102352944
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000016899	TruB_N	PF01509.18	4.4e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000017018	TRUB1-201	902	XM_005995315	ENSLACP00000016899	298 (aa)	XP_005995377	H3B4S8

Gene Model

Click here to download ENSLACG00000014885's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000014885's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000014885	TRUB1	92	73.551	ENSG00000165832	TRUB1	79	73.551	Homo_sapiens
ENSLACG00000014885	TRUB1	81	73.140	ENSAPOG00000020565	trub1	94	70.270	Acanthochromis_polyacanthus
ENSLACG00000014885	TRUB1	92	72.302	ENSAMEG00000014931	TRUB1	79	72.302	Ailuropoda_melanoleuca
ENSLACG00000014885	TRUB1	86	66.795	ENSACIG00000003060	trub1	86	66.795	Amphilophus_citrinellus
ENSLACG00000014885	TRUB1	81	73.140	ENSAOCG00000017188	trub1	94	70.270	Amphiprion_ocellaris
ENSLACG00000014885	TRUB1	86	69.884	ENSAPEG00000015209	trub1	94	69.884	Amphiprion_percula
ENSLACG00000014885	TRUB1	82	75.510	ENSATEG00000023291	trub1	88	75.510	Anabas_testudineus
ENSLACG00000014885	TRUB1	91	74.265	ENSAPLG00000006808	TRUB1	98	74.265	Anas_platyrhynchos
ENSLACG00000014885	TRUB1	89	68.679	ENSACAG00000009282	TRUB1	96	68.679	Anolis_carolinensis
ENSLACG00000014885	TRUB1	92	73.188	ENSANAG00000022870	TRUB1	79	73.188	Aotus_nancymaae
ENSLACG00000014885	TRUB1	86	70.656	ENSACLG00000000823	trub1	100	67.986	Astatotilapia_calliptera
ENSLACG00000014885	TRUB1	87	66.795	ENSAMXG00000015845	trub1	87	66.795	Astyanax_mexicanus
ENSLACG00000014885	TRUB1	92	72.826	ENSBTAG00000012955	TRUB1	78	72.826	Bos_taurus
ENSLACG00000014885	TRUB1	92	73.188	ENSCJAG00000047815	TRUB1	79	73.188	Callithrix_jacchus
ENSLACG00000014885	TRUB1	92	73.551	ENSCAFG00000011688	TRUB1	79	73.551	Canis_familiaris
ENSLACG00000014885	TRUB1	92	73.551	ENSCAFG00020013237	TRUB1	79	73.551	Canis_lupus_dingo
ENSLACG00000014885	TRUB1	92	72.826	ENSCHIG00000020884	TRUB1	83	72.826	Capra_hircus
ENSLACG00000014885	TRUB1	92	72.464	ENSTSYG00000000446	TRUB1	79	72.464	Carlito_syrichta
ENSLACG00000014885	TRUB1	75	66.667	ENSCAPG00000017088	TRUB1	88	66.667	Cavia_aperea
ENSLACG00000014885	TRUB1	61	75.676	ENSCPOG00000040236	-	84	70.388	Cavia_porcellus
ENSLACG00000014885	TRUB1	65	72.081	ENSCPOG00000030129	-	76	72.081	Cavia_porcellus
ENSLACG00000014885	TRUB1	92	73.188	ENSCCAG00000028842	TRUB1	79	73.188	Cebus_capucinus
ENSLACG00000014885	TRUB1	90	74.444	ENSCATG00000033431	TRUB1	79	72.826	Cercocebus_atys
ENSLACG00000014885	TRUB1	63	74.211	ENSCLAG00000008664	TRUB1	77	74.211	Chinchilla_lanigera
ENSLACG00000014885	TRUB1	92	72.826	ENSCSAG00000004891	TRUB1	79	72.826	Chlorocebus_sabaeus
ENSLACG00000014885	TRUB1	94	63.121	ENSCHOG00000011931	TRUB1	81	63.121	Choloepus_hoffmanni
ENSLACG00000014885	TRUB1	95	75.352	ENSCPBG00000003051	TRUB1	97	75.352	Chrysemys_picta_bellii
ENSLACG00000014885	TRUB1	92	72.826	ENSCANG00000029445	TRUB1	79	72.826	Colobus_angolensis_palliatus
ENSLACG00000014885	TRUB1	78	73.707	ENSCGRG00001016772	-	78	73.077	Cricetulus_griseus_chok1gshd
ENSLACG00000014885	TRUB1	86	65.891	ENSCGRG00001010322	-	75	63.929	Cricetulus_griseus_chok1gshd
ENSLACG00000014885	TRUB1	86	73.256	ENSCGRG00000010806	Trub1	85	71.223	Cricetulus_griseus_crigri
ENSLACG00000014885	TRUB1	83	66.667	ENSCSEG00000011261	trub1	94	60.616	Cynoglossus_semilaevis
ENSLACG00000014885	TRUB1	85	71.146	ENSCVAG00000008791	trub1	77	71.146	Cyprinodon_variegatus
ENSLACG00000014885	TRUB1	94	63.082	ENSDARG00000053805	trub1	96	63.082	Danio_rerio
ENSLACG00000014885	TRUB1	92	70.909	ENSDNOG00000001069	TRUB1	79	70.909	Dasypus_novemcinctus
ENSLACG00000014885	TRUB1	87	74.231	ENSDORG00000010431	Trub1	80	72.826	Dipodomys_ordii
ENSLACG00000014885	TRUB1	67	72.464	ENSETEG00000009183	TRUB1	60	68.667	Echinops_telfairi
ENSLACG00000014885	TRUB1	92	73.285	ENSEASG00005014739	TRUB1	79	73.285	Equus_asinus_asinus
ENSLACG00000014885	TRUB1	92	73.285	ENSECAG00000007177	TRUB1	79	73.285	Equus_caballus
ENSLACG00000014885	TRUB1	89	66.792	ENSEEUG00000013993	TRUB1	74	66.792	Erinaceus_europaeus
ENSLACG00000014885	TRUB1	91	67.528	ENSELUG00000000502	trub1	93	67.528	Esox_lucius
ENSLACG00000014885	TRUB1	92	74.275	ENSFCAG00000031927	TRUB1	79	74.275	Felis_catus
ENSLACG00000014885	TRUB1	77	77.391	ENSFALG00000002232	TRUB1	89	77.391	Ficedula_albicollis
ENSLACG00000014885	TRUB1	63	75.789	ENSFDAG00000008140	TRUB1	77	75.789	Fukomys_damarensis
ENSLACG00000014885	TRUB1	86	70.000	ENSFHEG00000004016	trub1	89	70.000	Fundulus_heteroclitus
ENSLACG00000014885	TRUB1	88	73.664	ENSGALG00000009091	TRUB1	93	73.664	Gallus_gallus
ENSLACG00000014885	TRUB1	86	70.000	ENSGAFG00000009193	trub1	91	70.000	Gambusia_affinis
ENSLACG00000014885	TRUB1	64	72.396	ENSGACG00000015387	trub1	94	72.396	Gasterosteus_aculeatus
ENSLACG00000014885	TRUB1	95	75.265	ENSGAGG00000009758	TRUB1	80	75.265	Gopherus_agassizii
ENSLACG00000014885	TRUB1	92	73.551	ENSGGOG00000004583	TRUB1	79	73.551	Gorilla_gorilla
ENSLACG00000014885	TRUB1	89	69.776	ENSHBUG00000016787	trub1	96	69.776	Haplochromis_burtoni
ENSLACG00000014885	TRUB1	89	71.642	ENSHGLG00000015314	TRUB1	77	71.642	Heterocephalus_glaber_female
ENSLACG00000014885	TRUB1	63	74.737	ENSHGLG00100009183	TRUB1	80	74.737	Heterocephalus_glaber_male
ENSLACG00000014885	TRUB1	86	70.817	ENSHCOG00000017877	trub1	93	70.817	Hippocampus_comes
ENSLACG00000014885	TRUB1	81	72.016	ENSIPUG00000017559	trub1	86	72.016	Ictalurus_punctatus
ENSLACG00000014885	TRUB1	90	73.881	ENSSTOG00000003641	TRUB1	80	73.881	Ictidomys_tridecemlineatus
ENSLACG00000014885	TRUB1	92	72.263	ENSJJAG00000011800	Trub1	81	72.263	Jaculus_jaculus
ENSLACG00000014885	TRUB1	86	70.656	ENSKMAG00000006232	trub1	93	70.656	Kryptolebias_marmoratus
ENSLACG00000014885	TRUB1	86	70.270	ENSLBEG00000026722	trub1	91	70.270	Labrus_bergylta
ENSLACG00000014885	TRUB1	93	72.563	ENSLOCG00000012979	trub1	95	72.563	Lepisosteus_oculatus
ENSLACG00000014885	TRUB1	86	75.000	ENSLAFG00000015452	TRUB1	77	72.862	Loxodonta_africana
ENSLACG00000014885	TRUB1	92	72.826	ENSMFAG00000031767	TRUB1	79	72.826	Macaca_fascicularis
ENSLACG00000014885	TRUB1	92	72.826	ENSMMUG00000001902	TRUB1	79	72.826	Macaca_mulatta
ENSLACG00000014885	TRUB1	92	67.754	ENSMNEG00000044646	TRUB1	78	67.754	Macaca_nemestrina
ENSLACG00000014885	TRUB1	92	72.826	ENSMLEG00000042655	TRUB1	79	72.826	Mandrillus_leucophaeus
ENSLACG00000014885	TRUB1	86	70.656	ENSMZEG00005024095	trub1	100	67.986	Maylandia_zebra
ENSLACG00000014885	TRUB1	88	74.046	ENSMGAG00000011135	TRUB1	90	74.046	Meleagris_gallopavo
ENSLACG00000014885	TRUB1	86	70.930	ENSMAUG00000011101	Trub1	81	69.708	Mesocricetus_auratus
ENSLACG00000014885	TRUB1	92	73.551	ENSMICG00000016324	TRUB1	79	73.551	Microcebus_murinus
ENSLACG00000014885	TRUB1	87	72.308	ENSMOCG00000017759	Trub1	84	70.609	Microtus_ochrogaster
ENSLACG00000014885	TRUB1	93	75.269	ENSMODG00000009676	TRUB1	79	73.702	Monodelphis_domestica
ENSLACG00000014885	TRUB1	88	72.624	MGP_CAROLIEiJ_G0023100	Trub1	82	71.014	Mus_caroli
ENSLACG00000014885	TRUB1	88	71.863	ENSMUSG00000025086	Trub1	82	70.290	Mus_musculus
ENSLACG00000014885	TRUB1	92	70.652	MGP_PahariEiJ_G0014588	Trub1	82	70.652	Mus_pahari
ENSLACG00000014885	TRUB1	88	71.863	MGP_SPRETEiJ_G0024021	Trub1	82	70.290	Mus_spretus
ENSLACG00000014885	TRUB1	92	73.913	ENSMPUG00000003556	TRUB1	79	73.913	Mustela_putorius_furo
ENSLACG00000014885	TRUB1	92	74.088	ENSMLUG00000017686	TRUB1	81	74.088	Myotis_lucifugus
ENSLACG00000014885	TRUB1	92	73.285	ENSNGAG00000018682	Trub1	79	73.285	Nannospalax_galili
ENSLACG00000014885	TRUB1	83	72.874	ENSNBRG00000023393	trub1	88	72.874	Neolamprologus_brichardi
ENSLACG00000014885	TRUB1	92	73.551	ENSNLEG00000016345	TRUB1	79	73.551	Nomascus_leucogenys
ENSLACG00000014885	TRUB1	67	79.602	ENSMEUG00000006603	TRUB1	80	76.279	Notamacropus_eugenii
ENSLACG00000014885	TRUB1	89	72.830	ENSOPRG00000009371	TRUB1	77	72.830	Ochotona_princeps
ENSLACG00000014885	TRUB1	89	72.015	ENSODEG00000010854	TRUB1	77	72.015	Octodon_degus
ENSLACG00000014885	TRUB1	86	71.042	ENSONIG00000007249	trub1	94	71.042	Oreochromis_niloticus
ENSLACG00000014885	TRUB1	94	70.775	ENSOANG00000001556	TRUB1	98	69.024	Ornithorhynchus_anatinus
ENSLACG00000014885	TRUB1	92	70.652	ENSOCUG00000009456	TRUB1	80	70.652	Oryctolagus_cuniculus
ENSLACG00000014885	TRUB1	92	68.248	ENSORLG00000029719	trub1	100	65.979	Oryzias_latipes
ENSLACG00000014885	TRUB1	92	67.636	ENSORLG00020016767	trub1	99	65.636	Oryzias_latipes_hni
ENSLACG00000014885	TRUB1	83	73.279	ENSORLG00015014728	trub1	94	70.722	Oryzias_latipes_hsok
ENSLACG00000014885	TRUB1	86	71.042	ENSOMEG00000014556	trub1	91	71.042	Oryzias_melastigma
ENSLACG00000014885	TRUB1	92	73.551	ENSOGAG00000015895	TRUB1	79	73.551	Otolemur_garnettii
ENSLACG00000014885	TRUB1	92	71.174	ENSOARG00000015591	TRUB1	82	70.383	Ovis_aries
ENSLACG00000014885	TRUB1	92	73.551	ENSPPAG00000043645	TRUB1	79	73.551	Pan_paniscus
ENSLACG00000014885	TRUB1	92	73.913	ENSPPRG00000007096	TRUB1	79	73.913	Panthera_pardus
ENSLACG00000014885	TRUB1	92	73.913	ENSPTIG00000006378	TRUB1	79	73.913	Panthera_tigris_altaica
ENSLACG00000014885	TRUB1	92	73.551	ENSPTRG00000002964	TRUB1	79	73.551	Pan_troglodytes
ENSLACG00000014885	TRUB1	92	72.826	ENSPANG00000020712	TRUB1	79	72.826	Papio_anubis
ENSLACG00000014885	TRUB1	64	66.842	ENSPKIG00000003852	trub1	80	66.842	Paramormyrops_kingsleyae
ENSLACG00000014885	TRUB1	94	75.627	ENSPSIG00000012877	TRUB1	95	75.627	Pelodiscus_sinensis
ENSLACG00000014885	TRUB1	86	66.537	ENSPMGG00000000075	trub1	91	66.537	Periophthalmus_magnuspinnatus
ENSLACG00000014885	TRUB1	92	71.168	ENSPEMG00000011156	Trub1	81	71.168	Peromyscus_maniculatus_bairdii
ENSLACG00000014885	TRUB1	93	75.090	ENSPCIG00000009729	TRUB1	78	72.852	Phascolarctos_cinereus
ENSLACG00000014885	TRUB1	82	73.984	ENSPFOG00000009950	trub1	90	73.984	Poecilia_formosa
ENSLACG00000014885	TRUB1	86	72.093	ENSPLAG00000013855	trub1	91	72.093	Poecilia_latipinna
ENSLACG00000014885	TRUB1	86	72.093	ENSPMEG00000009064	trub1	93	72.093	Poecilia_mexicana
ENSLACG00000014885	TRUB1	86	71.705	ENSPREG00000003343	trub1	93	71.705	Poecilia_reticulata
ENSLACG00000014885	TRUB1	92	73.188	ENSPPYG00000002676	TRUB1	79	73.188	Pongo_abelii
ENSLACG00000014885	TRUB1	95	63.860	ENSPCAG00000008427	TRUB1	81	63.860	Procavia_capensis
ENSLACG00000014885	TRUB1	92	67.391	ENSPCOG00000024360	TRUB1	78	67.391	Propithecus_coquereli
ENSLACG00000014885	TRUB1	69	78.365	ENSPVAG00000007575	TRUB1	79	78.365	Pteropus_vampyrus
ENSLACG00000014885	TRUB1	86	70.656	ENSPNYG00000018614	trub1	100	67.986	Pundamilia_nyererei
ENSLACG00000014885	TRUB1	92	58.608	ENSPNAG00000006881	trub1	85	58.608	Pygocentrus_nattereri
ENSLACG00000014885	TRUB1	92	70.073	ENSRNOG00000017321	Trub1	80	70.073	Rattus_norvegicus
ENSLACG00000014885	TRUB1	92	65.108	ENSRBIG00000033423	TRUB1	77	65.108	Rhinopithecus_bieti
ENSLACG00000014885	TRUB1	92	72.826	ENSRROG00000033902	TRUB1	79	72.826	Rhinopithecus_roxellana
ENSLACG00000014885	TRUB1	92	73.188	ENSSBOG00000024237	TRUB1	79	73.188	Saimiri_boliviensis_boliviensis
ENSLACG00000014885	TRUB1	82	74.899	ENSSHAG00000009346	TRUB1	81	74.899	Sarcophilus_harrisii
ENSLACG00000014885	TRUB1	90	68.382	ENSSFOG00015022124	trub1	91	68.382	Scleropages_formosus
ENSLACG00000014885	TRUB1	86	69.884	ENSSMAG00000001020	trub1	92	69.884	Scophthalmus_maximus
ENSLACG00000014885	TRUB1	86	70.385	ENSSDUG00000016414	trub1	94	70.385	Seriola_dumerili
ENSLACG00000014885	TRUB1	86	71.042	ENSSLDG00000015486	trub1	93	71.042	Seriola_lalandi_dorsalis
ENSLACG00000014885	TRUB1	95	73.498	ENSSPUG00000001642	TRUB1	96	73.498	Sphenodon_punctatus
ENSLACG00000014885	TRUB1	86	71.042	ENSSPAG00000001217	trub1	93	71.042	Stegastes_partitus
ENSLACG00000014885	TRUB1	92	71.377	ENSSSCG00000010653	TRUB1	80	71.377	Sus_scrofa
ENSLACG00000014885	TRUB1	87	77.220	ENSTGUG00000010971	TRUB1	96	75.373	Taeniopygia_guttata
ENSLACG00000014885	TRUB1	77	62.719	ENSTBEG00000002880	TRUB1	90	62.719	Tupaia_belangeri
ENSLACG00000014885	TRUB1	70	76.777	ENSTTRG00000005767	TRUB1	81	76.777	Tursiops_truncatus
ENSLACG00000014885	TRUB1	92	73.913	ENSUAMG00000024876	TRUB1	79	73.913	Ursus_americanus
ENSLACG00000014885	TRUB1	91	73.993	ENSUMAG00000002411	TRUB1	83	72.857	Ursus_maritimus
ENSLACG00000014885	TRUB1	92	73.551	ENSVPAG00000005507	TRUB1	79	73.551	Vicugna_pacos
ENSLACG00000014885	TRUB1	92	73.551	ENSVVUG00000010085	TRUB1	67	73.551	Vulpes_vulpes
ENSLACG00000014885	TRUB1	90	68.284	ENSXETG00000023828	trub1	97	68.284	Xenopus_tropicalis
ENSLACG00000014885	TRUB1	86	70.817	ENSXCOG00000017847	trub1	91	70.817	Xiphophorus_couchianus
ENSLACG00000014885	TRUB1	86	71.318	ENSXMAG00000014701	trub1	93	71.318	Xiphophorus_maculatus