EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000015232 (Gene tree)
Gene ID: 102359418
Gene Symbol: VARS
Alias: VARS2
Full Name: valyl-tRNA synthetase
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 24341 bases
Position: chrJH126993.1:1205933-1230273
Accession: 102359418
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000017294	Anticodon_1	PF08264.13	2.6e-34	1	1
ENSLACP00000017294	tRNA-synt_1	PF00133.22	9.6e-162	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000017421	VARS-201	3635	XM_005998168	ENSLACP00000017294	1201 (aa)	-	H3B5X3

Gene Model

Click here to download ENSLACG00000015232's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm00970	Aminoacyl-tRNA biosynthesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000015232's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000015232	VARS	79	49.335	ENSLACG00000001576	-	89	50.586

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000015232	VARS	99	62.787	ENSG00000204394	VARS	93	70.684	Homo_sapiens
ENSLACG00000015232	VARS	99	66.069	ENSAPOG00000020921	vars	96	66.122	Acanthochromis_polyacanthus
ENSLACG00000015232	VARS	99	66.069	ENSAPOG00000020691	vars	96	66.122	Acanthochromis_polyacanthus
ENSLACG00000015232	VARS	99	62.120	ENSAMEG00000006417	VARS	94	61.873	Ailuropoda_melanoleuca
ENSLACG00000015232	VARS	99	66.366	ENSACIG00000013752	vars	94	66.174	Amphilophus_citrinellus
ENSLACG00000015232	VARS	99	66.475	ENSAOCG00000002447	vars	93	66.366	Amphiprion_ocellaris
ENSLACG00000015232	VARS	99	66.639	ENSAPEG00000010638	vars	93	66.530	Amphiprion_percula
ENSLACG00000015232	VARS	99	64.327	ENSATEG00000020219	vars	94	62.975	Anabas_testudineus
ENSLACG00000015232	VARS	94	69.543	ENSACAG00000029133	-	99	69.888	Anolis_carolinensis
ENSLACG00000015232	VARS	99	62.942	ENSANAG00000015453	VARS	94	62.531	Aotus_nancymaae
ENSLACG00000015232	VARS	99	66.749	ENSACLG00000025699	vars	91	66.530	Astatotilapia_calliptera
ENSLACG00000015232	VARS	99	65.004	ENSAMXG00000017716	vars	95	63.696	Astyanax_mexicanus
ENSLACG00000015232	VARS	99	62.531	ENSBTAG00000005631	VARS	94	61.956	Bos_taurus
ENSLACG00000015232	VARS	99	62.541	ENSCJAG00000002604	VARS	94	62.202	Callithrix_jacchus
ENSLACG00000015232	VARS	99	62.202	ENSCAFG00000000636	VARS	94	61.873	Canis_familiaris
ENSLACG00000015232	VARS	98	62.366	ENSCAFG00020020790	VARS	96	62.035	Canis_lupus_dingo
ENSLACG00000015232	VARS	99	62.695	ENSCHIG00000011008	VARS	94	62.366	Capra_hircus
ENSLACG00000015232	VARS	99	62.613	ENSTSYG00000001567	VARS	94	62.202	Carlito_syrichta
ENSLACG00000015232	VARS	89	65.896	ENSCAPG00000013736	VARS	91	65.804	Cavia_aperea
ENSLACG00000015232	VARS	99	62.695	ENSCPOG00000000870	VARS	94	62.695	Cavia_porcellus
ENSLACG00000015232	VARS	99	62.766	ENSCCAG00000035656	VARS	94	62.428	Cebus_capucinus
ENSLACG00000015232	VARS	99	62.787	ENSCATG00000022394	VARS	94	62.366	Cercocebus_atys
ENSLACG00000015232	VARS	90	63.242	ENSCLAG00000009470	VARS	89	62.445	Chinchilla_lanigera
ENSLACG00000015232	VARS	99	62.951	ENSCSAG00000008784	VARS	94	62.531	Chlorocebus_sabaeus
ENSLACG00000015232	VARS	75	71.133	ENSCPBG00000007943	VARS	89	71.133	Chrysemys_picta_bellii
ENSLACG00000015232	VARS	99	62.951	ENSCANG00000033570	VARS	94	62.531	Colobus_angolensis_palliatus
ENSLACG00000015232	VARS	99	63.024	ENSCGRG00001005686	Vars	94	62.613	Cricetulus_griseus_chok1gshd
ENSLACG00000015232	VARS	92	61.029	ENSCGRG00000013352	Vars	73	60.593	Cricetulus_griseus_crigri
ENSLACG00000015232	VARS	99	64.934	ENSCSEG00000019652	vars	94	63.531	Cynoglossus_semilaevis
ENSLACG00000015232	VARS	99	66.912	ENSCVAG00000022398	vars	94	66.803	Cyprinodon_variegatus
ENSLACG00000015232	VARS	99	67.863	ENSDARG00000044575	vars	94	67.594	Danio_rerio
ENSLACG00000015232	VARS	82	67.262	ENSDORG00000016433	Vars	82	68.608	Dipodomys_ordii
ENSLACG00000015232	VARS	67	69.751	ENSETEG00000003824	VARS	70	69.751	Echinops_telfairi
ENSLACG00000015232	VARS	54	64.242	ENSEBUG00000004637	vars	90	64.545	Eptatretus_burgeri
ENSLACG00000015232	VARS	99	62.459	ENSEASG00005015673	VARS	94	62.120	Equus_asinus_asinus
ENSLACG00000015232	VARS	99	62.541	ENSECAG00000014620	VARS	94	62.613	Equus_caballus
ENSLACG00000015232	VARS	68	64.706	ENSEEUG00000004116	VARS	66	64.706	Erinaceus_europaeus
ENSLACG00000015232	VARS	99	65.334	ENSELUG00000006550	vars	92	65.661	Esox_lucius
ENSLACG00000015232	VARS	99	62.049	ENSFCAG00000004510	VARS	94	61.709	Felis_catus
ENSLACG00000015232	VARS	81	66.834	ENSFDAG00000011401	VARS	94	66.030	Fukomys_damarensis
ENSLACG00000015232	VARS	99	67.213	ENSFHEG00000010672	vars	94	67.430	Fundulus_heteroclitus
ENSLACG00000015232	VARS	99	64.524	ENSGMOG00000014908	vars	94	64.140	Gadus_morhua
ENSLACG00000015232	VARS	99	67.182	ENSGAFG00000021630	vars	94	65.794	Gambusia_affinis
ENSLACG00000015232	VARS	92	68.695	ENSGACG00000009601	vars	94	64.914	Gasterosteus_aculeatus
ENSLACG00000015232	VARS	55	59.613	ENSGAGG00000006508	-	96	59.314	Gopherus_agassizii
ENSLACG00000015232	VARS	99	63.033	ENSGGOG00000011364	VARS	94	62.613	Gorilla_gorilla
ENSLACG00000015232	VARS	99	66.830	ENSHBUG00000017151	vars	91	66.612	Haplochromis_burtoni
ENSLACG00000015232	VARS	99	62.859	ENSHGLG00000011646	VARS	94	62.777	Heterocephalus_glaber_female
ENSLACG00000015232	VARS	93	58.609	ENSHGLG00100018062	VARS	93	58.537	Heterocephalus_glaber_male
ENSLACG00000015232	VARS	93	72.149	ENSHCOG00000012198	vars	94	66.173	Hippocampus_comes
ENSLACG00000015232	VARS	99	67.214	ENSIPUG00000005218	vars	95	67.132	Ictalurus_punctatus
ENSLACG00000015232	VARS	99	62.787	ENSSTOG00000013112	VARS	94	62.202	Ictidomys_tridecemlineatus
ENSLACG00000015232	VARS	99	61.873	ENSJJAG00000019749	-	94	61.791	Jaculus_jaculus
ENSLACG00000015232	VARS	99	52.269	ENSJJAG00000015343	-	95	51.681	Jaculus_jaculus
ENSLACG00000015232	VARS	99	65.622	ENSKMAG00000009455	vars	94	65.239	Kryptolebias_marmoratus
ENSLACG00000015232	VARS	99	64.706	ENSLBEG00000010341	vars	73	72.228	Labrus_bergylta
ENSLACG00000015232	VARS	99	70.792	ENSLOCG00000004240	vars	94	70.380	Lepisosteus_oculatus
ENSLACG00000015232	VARS	99	62.459	ENSLAFG00000023090	VARS	94	62.120	Loxodonta_africana
ENSLACG00000015232	VARS	99	62.787	ENSMFAG00000001032	VARS	94	62.366	Macaca_fascicularis
ENSLACG00000015232	VARS	99	62.787	ENSMMUG00000006828	VARS	94	62.366	Macaca_mulatta
ENSLACG00000015232	VARS	99	62.705	ENSMNEG00000042072	VARS	94	62.284	Macaca_nemestrina
ENSLACG00000015232	VARS	99	62.787	ENSMLEG00000039307	VARS	94	62.366	Mandrillus_leucophaeus
ENSLACG00000015232	VARS	99	66.530	ENSMAMG00000003949	vars	94	66.008	Mastacembelus_armatus
ENSLACG00000015232	VARS	99	66.749	ENSMZEG00005018327	vars	91	66.530	Maylandia_zebra
ENSLACG00000015232	VARS	99	62.777	ENSMAUG00000006715	Vars	94	62.366	Mesocricetus_auratus
ENSLACG00000015232	VARS	99	62.377	ENSMICG00000003548	VARS	94	61.791	Microcebus_murinus
ENSLACG00000015232	VARS	99	60.870	ENSMOCG00000015404	Vars	94	60.541	Microtus_ochrogaster
ENSLACG00000015232	VARS	99	64.633	ENSMMOG00000015801	vars	94	64.498	Mola_mola
ENSLACG00000015232	VARS	99	62.306	ENSMODG00000015204	-	94	61.733	Monodelphis_domestica
ENSLACG00000015232	VARS	99	66.066	ENSMALG00000022532	vars	94	65.848	Monopterus_albus
ENSLACG00000015232	VARS	99	62.777	MGP_CAROLIEiJ_G0021491	Vars	94	62.366	Mus_caroli
ENSLACG00000015232	VARS	99	62.695	ENSMUSG00000007029	Vars	94	62.284	Mus_musculus
ENSLACG00000015232	VARS	99	62.531	MGP_PahariEiJ_G0020486	Vars	94	62.120	Mus_pahari
ENSLACG00000015232	VARS	99	63.024	MGP_SPRETEiJ_G0022396	Vars	94	62.366	Mus_spretus
ENSLACG00000015232	VARS	99	62.366	ENSMPUG00000010821	VARS	94	60.604	Mustela_putorius_furo
ENSLACG00000015232	VARS	82	63.636	ENSMLUG00000013126	VARS	100	63.636	Myotis_lucifugus
ENSLACG00000015232	VARS	99	62.038	ENSNGAG00000012151	Vars	94	62.120	Nannospalax_galili
ENSLACG00000015232	VARS	99	66.749	ENSNBRG00000020520	vars	94	66.557	Neolamprologus_brichardi
ENSLACG00000015232	VARS	99	62.695	ENSNLEG00000006351	VARS	94	62.284	Nomascus_leucogenys
ENSLACG00000015232	VARS	93	68.030	ENSMEUG00000011378	VARS	89	68.251	Notamacropus_eugenii
ENSLACG00000015232	VARS	99	63.270	ENSOPRG00000003607	VARS	94	63.517	Ochotona_princeps
ENSLACG00000015232	VARS	99	62.038	ENSODEG00000017681	VARS	94	61.627	Octodon_degus
ENSLACG00000015232	VARS	99	67.023	ENSONIG00000013064	vars	94	70.211	Oreochromis_niloticus
ENSLACG00000015232	VARS	81	66.906	ENSOANG00000005400	VARS	98	66.906	Ornithorhynchus_anatinus
ENSLACG00000015232	VARS	99	61.066	ENSOCUG00000022463	VARS	73	69.330	Oryctolagus_cuniculus
ENSLACG00000015232	VARS	99	66.585	ENSORLG00000013063	vars	94	66.531	Oryzias_latipes
ENSLACG00000015232	VARS	99	67.021	ENSORLG00020003504	vars	94	66.858	Oryzias_latipes_hni
ENSLACG00000015232	VARS	99	66.694	ENSORLG00015009001	vars	94	66.994	Oryzias_latipes_hsok
ENSLACG00000015232	VARS	99	66.313	ENSOMEG00000015016	vars	94	66.150	Oryzias_melastigma
ENSLACG00000015232	VARS	99	62.613	ENSOGAG00000007515	VARS	94	60.685	Otolemur_garnettii
ENSLACG00000015232	VARS	99	62.951	ENSPPAG00000034012	VARS	94	62.613	Pan_paniscus
ENSLACG00000015232	VARS	99	62.213	ENSPPRG00000014855	VARS	94	61.873	Panthera_pardus
ENSLACG00000015232	VARS	90	64.690	ENSPTIG00000010462	VARS	95	63.939	Panthera_tigris_altaica
ENSLACG00000015232	VARS	99	62.951	ENSPTRG00000017985	VARS	94	62.613	Pan_troglodytes
ENSLACG00000015232	VARS	99	60.993	ENSPANG00000014565	VARS	94	60.571	Papio_anubis
ENSLACG00000015232	VARS	99	66.070	ENSPKIG00000016304	vars	94	65.554	Paramormyrops_kingsleyae
ENSLACG00000015232	VARS	99	65.574	ENSPMGG00000023909	vars	94	63.934	Periophthalmus_magnuspinnatus
ENSLACG00000015232	VARS	99	63.240	ENSPEMG00000006639	Vars	94	62.829	Peromyscus_maniculatus_bairdii
ENSLACG00000015232	VARS	99	62.613	ENSPCIG00000018553	VARS	94	61.873	Phascolarctos_cinereus
ENSLACG00000015232	VARS	99	67.130	ENSPFOG00000015690	vars	94	66.694	Poecilia_formosa
ENSLACG00000015232	VARS	99	67.294	ENSPLAG00000009590	vars	94	67.214	Poecilia_latipinna
ENSLACG00000015232	VARS	99	67.130	ENSPMEG00000004708	vars	94	67.050	Poecilia_mexicana
ENSLACG00000015232	VARS	99	63.487	ENSPREG00000013264	vars	94	73.168	Poecilia_reticulata
ENSLACG00000015232	VARS	99	61.557	ENSPPYG00000016460	VARS	94	60.970	Pongo_abelii
ENSLACG00000015232	VARS	84	70.309	ENSPCAG00000013565	VARS	80	70.309	Procavia_capensis
ENSLACG00000015232	VARS	99	62.859	ENSPCOG00000010942	VARS	94	62.859	Propithecus_coquereli
ENSLACG00000015232	VARS	99	60.246	ENSPVAG00000012403	VARS	94	59.819	Pteropus_vampyrus
ENSLACG00000015232	VARS	99	66.830	ENSPNYG00000022511	vars	94	66.612	Pundamilia_nyererei
ENSLACG00000015232	VARS	99	66.612	ENSPNAG00000020962	vars	91	72.806	Pygocentrus_nattereri
ENSLACG00000015232	VARS	99	62.777	ENSRNOG00000000867	Vars	94	62.120	Rattus_norvegicus
ENSLACG00000015232	VARS	99	62.787	ENSRBIG00000041669	VARS	94	62.366	Rhinopithecus_bieti
ENSLACG00000015232	VARS	99	62.787	ENSRROG00000045490	VARS	94	62.366	Rhinopithecus_roxellana
ENSLACG00000015232	VARS	99	62.531	ENSSBOG00000035402	VARS	94	61.956	Saimiri_boliviensis_boliviensis
ENSLACG00000015232	VARS	99	61.721	ENSSHAG00000006937	VARS	94	59.508	Sarcophilus_harrisii
ENSLACG00000015232	VARS	99	66.884	ENSSFOG00015014272	vars	91	72.668	Scleropages_formosus
ENSLACG00000015232	VARS	99	65.957	ENSSMAG00000009596	vars	94	65.930	Scophthalmus_maximus
ENSLACG00000015232	VARS	99	66.831	ENSSDUG00000014177	vars	94	66.694	Seriola_dumerili
ENSLACG00000015232	VARS	99	66.831	ENSSLDG00000025316	vars	94	66.639	Seriola_lalandi_dorsalis
ENSLACG00000015232	VARS	99	66.831	ENSSPAG00000017068	vars	94	66.612	Stegastes_partitus
ENSLACG00000015232	VARS	99	62.859	ENSSSCG00000038950	VARS	94	62.695	Sus_scrofa
ENSLACG00000015232	VARS	87	64.360	ENSTRUG00000012307	vars	98	62.819	Takifugu_rubripes
ENSLACG00000015232	VARS	99	66.584	ENSTNIG00000008011	vars	94	66.392	Tetraodon_nigroviridis
ENSLACG00000015232	VARS	99	55.300	ENSTTRG00000014128	VARS	89	62.252	Tursiops_truncatus
ENSLACG00000015232	VARS	99	62.490	ENSUAMG00000010424	VARS	94	62.592	Ursus_americanus
ENSLACG00000015232	VARS	88	73.223	ENSUMAG00000013486	VARS	92	71.854	Ursus_maritimus
ENSLACG00000015232	VARS	99	62.449	ENSVVUG00000021323	VARS	94	62.449	Vulpes_vulpes
ENSLACG00000015232	VARS	99	62.562	ENSXETG00000024076	vars	94	62.479	Xenopus_tropicalis
ENSLACG00000015232	VARS	99	66.149	ENSXCOG00000019172	vars	94	65.876	Xiphophorus_couchianus
ENSLACG00000015232	VARS	99	66.694	ENSXMAG00000010927	vars	94	66.612	Xiphophorus_maculatus