EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000015511 (Gene tree)
Gene ID: 102354702
Gene Symbol: -
Alias: -
Full Name: pre-mRNA processing factor 38B
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Minus strand
Length: 14292 bases
Position: chrJH126970.1:1278296-1292587
Accession: 102354702
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000017612	PRP38	PF03371.15	1.9e-57	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000017742	-	2728	XM_005997731	ENSLACP00000017612	540 (aa)	XP_005997793	H3B6U1

Gene Model

Click here to download ENSLACG00000015511's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000015511's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000015511	-	97	59.280	ENSATEG00000014482	-	100	60.755	Anabas_testudineus
ENSLACG00000015511	-	72	65.835	ENSAMXG00000039494	-	57	66.667	Astyanax_mexicanus
ENSLACG00000015511	-	51	90.975	ENSBTAG00000047874	PRPF38B	97	73.732	Bos_taurus
ENSLACG00000015511	-	95	63.396	ENSCAFG00020010992	-	97	66.365	Canis_lupus_dingo
ENSLACG00000015511	-	51	90.975	ENSCHIG00000024357	-	97	73.732	Capra_hircus
ENSLACG00000015511	-	93	74.031	ENSCPOG00000039545	-	97	73.188	Cavia_porcellus
ENSLACG00000015511	-	50	91.882	ENSCLAG00000005801	-	97	73.779	Chinchilla_lanigera
ENSLACG00000015511	-	96	74.436	ENSCPBG00000028299	-	93	76.136	Chrysemys_picta_bellii
ENSLACG00000015511	-	94	56.920	ENSCSEG00000015030	-	97	56.832	Cynoglossus_semilaevis
ENSLACG00000015511	-	77	80.430	ENSETEG00000014690	-	92	78.622	Echinops_telfairi
ENSLACG00000015511	-	99	57.041	ENSELUG00000010390	-	100	60.213	Esox_lucius
ENSLACG00000015511	-	92	58.513	ENSGMOG00000012080	-	100	54.731	Gadus_morhua
ENSLACG00000015511	-	99	71.480	ENSGALG00000001972	-	93	75.483	Gallus_gallus
ENSLACG00000015511	-	76	66.019	ENSGAFG00000008943	-	100	58.647	Gambusia_affinis
ENSLACG00000015511	-	96	76.504	ENSGAGG00000001563	-	99	72.261	Gopherus_agassizii
ENSLACG00000015511	-	95	73.913	ENSHGLG00000016583	PRPF38B	97	74.270	Heterocephalus_glaber_female
ENSLACG00000015511	-	95	73.724	ENSHGLG00100015525	-	97	74.270	Heterocephalus_glaber_male
ENSLACG00000015511	-	94	57.500	ENSKMAG00000005540	-	97	58.858	Kryptolebias_marmoratus
ENSLACG00000015511	-	50	92.593	ENSMOCG00000020285	-	96	72.491	Microtus_ochrogaster
ENSLACG00000015511	-	88	60.246	ENSMMOG00000011639	-	97	57.611	Mola_mola
ENSLACG00000015511	-	51	92.058	ENSMODG00000002350	-	88	93.066	Monodelphis_domestica
ENSLACG00000015511	-	97	59.510	ENSMALG00000019479	-	100	60.943	Monopterus_albus
ENSLACG00000015511	-	74	90.000	ENSOPRG00000013543	-	77	68.571	Ochotona_princeps
ENSLACG00000015511	-	91	60.636	ENSONIG00000010129	-	99	58.647	Oreochromis_niloticus
ENSLACG00000015511	-	92	70.726	ENSOANG00000007343	-	99	78.552	Ornithorhynchus_anatinus
ENSLACG00000015511	-	97	59.475	ENSORLG00000015621	-	87	92.053	Oryzias_latipes
ENSLACG00000015511	-	97	60.152	ENSORLG00020016276	-	86	92.053	Oryzias_latipes_hni
ENSLACG00000015511	-	97	60.152	ENSORLG00015016270	-	71	93.197	Oryzias_latipes_hsok
ENSLACG00000015511	-	97	58.824	ENSOMEG00000022050	-	89	91.503	Oryzias_melastigma
ENSLACG00000015511	-	94	77.500	ENSOGAG00000027048	-	96	74.816	Otolemur_garnettii
ENSLACG00000015511	-	95	72.000	ENSOARG00000018899	-	99	72.072	Ovis_aries
ENSLACG00000015511	-	97	64.870	ENSPKIG00000017291	-	93	59.891	Paramormyrops_kingsleyae
ENSLACG00000015511	-	93	62.913	ENSPKIG00000004815	-	97	58.899	Paramormyrops_kingsleyae
ENSLACG00000015511	-	96	74.812	ENSPSIG00000016569	-	93	75.189	Pelodiscus_sinensis
ENSLACG00000015511	-	76	66.262	ENSPFOG00000004025	-	88	83.908	Poecilia_formosa
ENSLACG00000015511	-	76	66.262	ENSPLAG00000019842	-	100	59.099	Poecilia_latipinna
ENSLACG00000015511	-	76	66.262	ENSPMEG00000004807	-	99	58.550	Poecilia_mexicana
ENSLACG00000015511	-	97	57.765	ENSPREG00000015599	-	80	93.878	Poecilia_reticulata
ENSLACG00000015511	-	51	81.720	ENSPNAG00000017484	-	93	62.076	Pygocentrus_nattereri
ENSLACG00000015511	-	50	91.852	ENSRNOG00000020438	Prpf38b	97	71.245	Rattus_norvegicus
ENSLACG00000015511	-	97	58.421	ENSSFOG00015011251	-	88	85.143	Scleropages_formosus
ENSLACG00000015511	-	97	56.180	ENSSLDG00000023487	-	80	91.216	Seriola_lalandi_dorsalis
ENSLACG00000015511	-	96	75.379	ENSSPUG00000017742	-	93	75.285	Sphenodon_punctatus
ENSLACG00000015511	-	71	68.205	ENSTRUG00000011765	-	98	57.393	Takifugu_rubripes
ENSLACG00000015511	-	54	76.351	ENSTNIG00000015299	-	92	67.448	Tetraodon_nigroviridis
ENSLACG00000015511	-	50	82.963	ENSTBEG00000007504	-	99	71.023	Tupaia_belangeri
ENSLACG00000015511	-	50	92.593	ENSTTRG00000006479	-	97	74.457	Tursiops_truncatus
ENSLACG00000015511	-	50	76.866	ENSVPAG00000005541	-	97	67.029	Vicugna_pacos
ENSLACG00000015511	-	89	73.663	ENSXETG00000005260	prpf38b	96	67.913	Xenopus_tropicalis
ENSLACG00000015511	-	75	65.865	ENSXCOG00000008329	-	100	59.013	Xiphophorus_couchianus
ENSLACG00000015511	-	75	65.865	ENSXMAG00000023831	-	100	59.013	Xiphophorus_maculatus