EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000015700 (Gene tree)
Gene ID: 102362026
Gene Symbol: LSM7
Alias: YNL147W
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 3695 bases
Position: chrJH126613.1:1331824-1335518
Accession: 102362026
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000017825	LSM	PF01423.22	3.1e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000017955	LSM7-201	312	XM_005989849	ENSLACP00000017825	103 (aa)	XP_005989911	H3B7F4

Gene Model

Click here to download ENSLACG00000015700's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm03018	RNA degradation	KEGG
lcm03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000015700's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000015700	LSM7	69	39.437	ENSLACG00000017900	SNRPG	83	39.437
ENSLACG00000015700	LSM7	72	36.842	ENSLACG00000010231	LSM8	73	36.842

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000015700	LSM7	100	97.087	ENSG00000130332	LSM7	100	97.959	Homo_sapiens
ENSLACG00000015700	LSM7	92	94.737	ENSAPOG00000015573	lsm7	74	95.349	Acanthochromis_polyacanthus
ENSLACG00000015700	LSM7	100	97.087	ENSAMEG00000005484	LSM7	100	97.087	Ailuropoda_melanoleuca
ENSLACG00000015700	LSM7	94	94.845	ENSACIG00000006498	lsm7	71	95.506	Amphilophus_citrinellus
ENSLACG00000015700	LSM7	99	95.098	ENSAOCG00000001077	lsm7	85	95.699	Amphiprion_ocellaris
ENSLACG00000015700	LSM7	100	95.146	ENSAPEG00000000694	lsm7	90	95.699	Amphiprion_percula
ENSLACG00000015700	LSM7	100	95.146	ENSAPEG00000024447	lsm7	85	95.699	Amphiprion_percula
ENSLACG00000015700	LSM7	100	94.175	ENSATEG00000008557	lsm7	90	95.699	Anabas_testudineus
ENSLACG00000015700	LSM7	100	97.087	ENSANAG00000037196	-	100	97.087	Aotus_nancymaae
ENSLACG00000015700	LSM7	100	88.350	ENSANAG00000022222	-	90	89.247	Aotus_nancymaae
ENSLACG00000015700	LSM7	100	93.204	ENSACLG00000021021	lsm7	90	95.699	Astatotilapia_calliptera
ENSLACG00000015700	LSM7	100	94.175	ENSAMXG00000037622	lsm7	90	95.699	Astyanax_mexicanus
ENSLACG00000015700	LSM7	100	97.087	ENSBTAG00000004521	LSM7	100	97.087	Bos_taurus
ENSLACG00000015700	LSM7	98	57.426	WBGene00003081	lsm-7	88	56.522	Caenorhabditis_elegans
ENSLACG00000015700	LSM7	54	96.429	ENSCJAG00000039713	-	68	96.429	Callithrix_jacchus
ENSLACG00000015700	LSM7	99	97.059	ENSCAFG00000019409	LSM7	99	97.059	Canis_familiaris
ENSLACG00000015700	LSM7	98	98.020	ENSCAFG00020018168	LSM7	74	98.020	Canis_lupus_dingo
ENSLACG00000015700	LSM7	100	98.058	ENSCHIG00000023663	LSM7	100	98.058	Capra_hircus
ENSLACG00000015700	LSM7	69	98.592	ENSCAPG00000014534	LSM7	100	98.592	Cavia_aperea
ENSLACG00000015700	LSM7	100	97.087	ENSCPOG00000014025	LSM7	100	99.010	Cavia_porcellus
ENSLACG00000015700	LSM7	98	99.010	ENSCCAG00000035456	LSM7	99	99.010	Cebus_capucinus
ENSLACG00000015700	LSM7	100	97.087	ENSCATG00000023543	LSM7	100	97.087	Cercocebus_atys
ENSLACG00000015700	LSM7	100	97.087	ENSCLAG00000011635	LSM7	100	97.087	Chinchilla_lanigera
ENSLACG00000015700	LSM7	100	97.087	ENSCSAG00000011599	LSM7	100	97.087	Chlorocebus_sabaeus
ENSLACG00000015700	LSM7	70	95.833	ENSCPBG00000021317	LSM7	77	95.833	Chrysemys_picta_bellii
ENSLACG00000015700	LSM7	93	80.208	ENSCING00000022134	-	91	81.111	Ciona_intestinalis
ENSLACG00000015700	LSM7	100	97.087	ENSCANG00000035525	LSM7	100	97.087	Colobus_angolensis_palliatus
ENSLACG00000015700	LSM7	87	88.889	ENSCGRG00001016005	-	83	87.805	Cricetulus_griseus_chok1gshd
ENSLACG00000015700	LSM7	100	96.117	ENSCGRG00001000807	-	100	96.117	Cricetulus_griseus_chok1gshd
ENSLACG00000015700	LSM7	87	88.889	ENSCGRG00000006821	-	83	87.805	Cricetulus_griseus_crigri
ENSLACG00000015700	LSM7	99	97.059	ENSCGRG00000014355	-	98	97.059	Cricetulus_griseus_crigri
ENSLACG00000015700	LSM7	98	96.040	ENSCSEG00000014900	lsm7	86	96.040	Cynoglossus_semilaevis
ENSLACG00000015700	LSM7	98	97.030	ENSCVAG00000021091	lsm7	94	97.030	Cyprinodon_variegatus
ENSLACG00000015700	LSM7	100	94.175	ENSDARG00000058328	lsm7	90	96.774	Danio_rerio
ENSLACG00000015700	LSM7	98	97.030	ENSDORG00000024460	Lsm7	99	97.030	Dipodomys_ordii
ENSLACG00000015700	LSM7	94	76.531	FBgn0261068	LSm7	83	76.923	Drosophila_melanogaster
ENSLACG00000015700	LSM7	99	95.098	ENSETEG00000012788	LSM7	100	95.098	Echinops_telfairi
ENSLACG00000015700	LSM7	100	84.466	ENSEBUG00000016992	lsm7	89	88.172	Eptatretus_burgeri
ENSLACG00000015700	LSM7	81	59.036	ENSEBUG00000010470	-	79	59.036	Eptatretus_burgeri
ENSLACG00000015700	LSM7	100	93.204	ENSECAG00000001440	LSM7	60	94.624	Equus_caballus
ENSLACG00000015700	LSM7	100	96.117	ENSFCAG00000003445	LSM7	100	96.117	Felis_catus
ENSLACG00000015700	LSM7	98	98.020	ENSFALG00000011912	LSM7	100	98.020	Ficedula_albicollis
ENSLACG00000015700	LSM7	93	98.958	ENSFDAG00000007661	LSM7	100	98.958	Fukomys_damarensis
ENSLACG00000015700	LSM7	98	97.030	ENSFHEG00000006349	lsm7	90	97.030	Fundulus_heteroclitus
ENSLACG00000015700	LSM7	100	93.204	ENSGMOG00000013320	lsm7	90	93.548	Gadus_morhua
ENSLACG00000015700	LSM7	100	95.146	ENSGAFG00000013902	lsm7	90	96.774	Gambusia_affinis
ENSLACG00000015700	LSM7	100	93.204	ENSGACG00000010390	lsm7	90	94.624	Gasterosteus_aculeatus
ENSLACG00000015700	LSM7	100	97.087	ENSGGOG00000010172	LSM7	100	97.087	Gorilla_gorilla
ENSLACG00000015700	LSM7	100	93.204	ENSHBUG00000004616	lsm7	90	95.699	Haplochromis_burtoni
ENSLACG00000015700	LSM7	100	97.087	ENSHGLG00000010587	LSM7	100	97.087	Heterocephalus_glaber_female
ENSLACG00000015700	LSM7	100	97.087	ENSHGLG00100000852	LSM7	100	97.087	Heterocephalus_glaber_male
ENSLACG00000015700	LSM7	98	95.050	ENSHCOG00000020252	lsm7	92	95.699	Hippocampus_comes
ENSLACG00000015700	LSM7	100	94.175	ENSIPUG00000024724	lsm7	90	95.699	Ictalurus_punctatus
ENSLACG00000015700	LSM7	99	98.039	ENSSTOG00000028372	LSM7	99	99.010	Ictidomys_tridecemlineatus
ENSLACG00000015700	LSM7	97	99.000	ENSJJAG00000001936	Lsm7	97	99.000	Jaculus_jaculus
ENSLACG00000015700	LSM7	100	95.146	ENSKMAG00000022151	lsm7	90	96.774	Kryptolebias_marmoratus
ENSLACG00000015700	LSM7	100	94.175	ENSLBEG00000005203	lsm7	90	95.699	Labrus_bergylta
ENSLACG00000015700	LSM7	100	97.087	ENSLOCG00000004356	lsm7	100	97.087	Lepisosteus_oculatus
ENSLACG00000015700	LSM7	99	98.039	ENSLAFG00000029302	LSM7	99	98.039	Loxodonta_africana
ENSLACG00000015700	LSM7	100	97.087	ENSMFAG00000044572	LSM7	100	97.087	Macaca_fascicularis
ENSLACG00000015700	LSM7	100	97.087	ENSMMUG00000000452	LSM7	99	99.010	Macaca_mulatta
ENSLACG00000015700	LSM7	100	97.087	ENSMNEG00000004393	LSM7	100	97.087	Macaca_nemestrina
ENSLACG00000015700	LSM7	100	97.087	ENSMLEG00000030852	LSM7	100	99.010	Mandrillus_leucophaeus
ENSLACG00000015700	LSM7	100	93.204	ENSMAMG00000005410	lsm7	90	95.699	Mastacembelus_armatus
ENSLACG00000015700	LSM7	100	93.204	ENSMZEG00005028055	lsm7	90	95.699	Maylandia_zebra
ENSLACG00000015700	LSM7	100	97.087	ENSMGAG00000000750	LSM7	89	97.087	Meleagris_gallopavo
ENSLACG00000015700	LSM7	100	96.117	ENSMAUG00000009276	Lsm7	100	96.117	Mesocricetus_auratus
ENSLACG00000015700	LSM7	100	97.087	ENSMICG00000028619	-	100	97.087	Microcebus_murinus
ENSLACG00000015700	LSM7	100	98.058	ENSMICG00000009988	-	100	98.058	Microcebus_murinus
ENSLACG00000015700	LSM7	100	96.117	ENSMOCG00000016925	Lsm7	100	96.117	Microtus_ochrogaster
ENSLACG00000015700	LSM7	100	94.175	ENSMMOG00000019645	lsm7	89	95.699	Mola_mola
ENSLACG00000015700	LSM7	100	98.058	ENSMODG00000004722	LSM7	100	98.058	Monodelphis_domestica
ENSLACG00000015700	LSM7	100	93.204	ENSMALG00000014511	lsm7	72	95.699	Monopterus_albus
ENSLACG00000015700	LSM7	99	96.078	MGP_CAROLIEiJ_G0015607	Lsm7	99	96.078	Mus_caroli
ENSLACG00000015700	LSM7	99	96.078	ENSMUSG00000035215	Lsm7	99	96.078	Mus_musculus
ENSLACG00000015700	LSM7	99	96.078	MGP_PahariEiJ_G0031020	Lsm7	99	96.078	Mus_pahari
ENSLACG00000015700	LSM7	99	96.078	MGP_SPRETEiJ_G0016425	Lsm7	99	96.078	Mus_spretus
ENSLACG00000015700	LSM7	99	91.176	ENSMLUG00000024002	-	85	93.478	Myotis_lucifugus
ENSLACG00000015700	LSM7	100	97.087	ENSMLUG00000013097	-	100	97.087	Myotis_lucifugus
ENSLACG00000015700	LSM7	100	95.146	ENSNGAG00000021637	Lsm7	100	95.146	Nannospalax_galili
ENSLACG00000015700	LSM7	99	94.118	ENSNBRG00000015770	lsm7	80	95.699	Neolamprologus_brichardi
ENSLACG00000015700	LSM7	91	95.745	ENSNBRG00000001237	-	74	95.699	Neolamprologus_brichardi
ENSLACG00000015700	LSM7	100	97.087	ENSNLEG00000002265	LSM7	100	97.087	Nomascus_leucogenys
ENSLACG00000015700	LSM7	100	90.291	ENSODEG00000018769	-	90	91.398	Octodon_degus
ENSLACG00000015700	LSM7	100	97.087	ENSODEG00000013590	-	100	97.087	Octodon_degus
ENSLACG00000015700	LSM7	100	76.699	ENSODEG00000008190	-	89	77.419	Octodon_degus
ENSLACG00000015700	LSM7	100	93.204	ENSONIG00000001801	lsm7	80	95.699	Oreochromis_niloticus
ENSLACG00000015700	LSM7	100	95.146	ENSORLG00000023951	lsm7	90	95.699	Oryzias_latipes
ENSLACG00000015700	LSM7	100	95.146	ENSORLG00020022226	lsm7	90	95.699	Oryzias_latipes_hni
ENSLACG00000015700	LSM7	100	95.146	ENSORLG00015020044	lsm7	86	95.699	Oryzias_latipes_hsok
ENSLACG00000015700	LSM7	100	94.175	ENSOMEG00000012806	lsm7	90	95.699	Oryzias_melastigma
ENSLACG00000015700	LSM7	100	85.437	ENSOGAG00000024373	-	91	87.097	Otolemur_garnettii
ENSLACG00000015700	LSM7	99	96.078	ENSOGAG00000000144	-	100	96.078	Otolemur_garnettii
ENSLACG00000015700	LSM7	100	98.058	ENSOARG00000014013	LSM7	100	98.058	Ovis_aries
ENSLACG00000015700	LSM7	100	97.087	ENSPPAG00000026500	LSM7	100	97.087	Pan_paniscus
ENSLACG00000015700	LSM7	100	96.117	ENSPPRG00000008624	LSM7	100	96.117	Panthera_pardus
ENSLACG00000015700	LSM7	98	98.020	ENSPTIG00000016252	LSM7	98	98.020	Panthera_tigris_altaica
ENSLACG00000015700	LSM7	100	97.087	ENSPTRG00000010233	LSM7	100	97.087	Pan_troglodytes
ENSLACG00000015700	LSM7	100	97.087	ENSPANG00000020668	LSM7	100	97.087	Papio_anubis
ENSLACG00000015700	LSM7	100	96.117	ENSPKIG00000011325	lsm7	100	96.117	Paramormyrops_kingsleyae
ENSLACG00000015700	LSM7	98	99.010	ENSPSIG00000017149	LSM7	89	99.010	Pelodiscus_sinensis
ENSLACG00000015700	LSM7	100	94.175	ENSPMGG00000006498	lsm7	90	95.699	Periophthalmus_magnuspinnatus
ENSLACG00000015700	LSM7	100	98.058	ENSPCIG00000030454	LSM7	99	100.000	Phascolarctos_cinereus
ENSLACG00000015700	LSM7	100	95.146	ENSPFOG00000012467	lsm7	82	95.699	Poecilia_formosa
ENSLACG00000015700	LSM7	100	95.146	ENSPLAG00000000252	lsm7	94	96.040	Poecilia_latipinna
ENSLACG00000015700	LSM7	100	95.146	ENSPMEG00000000587	lsm7	94	96.040	Poecilia_mexicana
ENSLACG00000015700	LSM7	78	74.074	ENSPREG00000016718	lsm7	57	73.239	Poecilia_reticulata
ENSLACG00000015700	LSM7	71	97.260	ENSPPYG00000009348	-	50	97.260	Pongo_abelii
ENSLACG00000015700	LSM7	100	97.087	ENSPCOG00000017177	LSM7	99	99.010	Propithecus_coquereli
ENSLACG00000015700	LSM7	100	93.204	ENSPNYG00000006938	lsm7	90	95.699	Pundamilia_nyererei
ENSLACG00000015700	LSM7	100	94.175	ENSPNAG00000010141	lsm7	99	96.040	Pygocentrus_nattereri
ENSLACG00000015700	LSM7	99	97.059	ENSRNOG00000019552	Lsm7	99	97.059	Rattus_norvegicus
ENSLACG00000015700	LSM7	100	97.087	ENSRBIG00000035978	LSM7	100	97.087	Rhinopithecus_bieti
ENSLACG00000015700	LSM7	100	97.087	ENSRROG00000034044	LSM7	100	97.087	Rhinopithecus_roxellana
ENSLACG00000015700	LSM7	86	47.826	YNL147W	-	75	47.674	Saccharomyces_cerevisiae
ENSLACG00000015700	LSM7	100	97.087	ENSSBOG00000034899	LSM7	100	97.087	Saimiri_boliviensis_boliviensis
ENSLACG00000015700	LSM7	100	94.175	ENSSFOG00015006728	lsm7	90	95.699	Scleropages_formosus
ENSLACG00000015700	LSM7	100	94.175	ENSSMAG00000004195	lsm7	93	96.040	Scophthalmus_maximus
ENSLACG00000015700	LSM7	100	94.175	ENSSDUG00000001863	lsm7	90	95.699	Seriola_dumerili
ENSLACG00000015700	LSM7	100	94.175	ENSSLDG00000016339	lsm7	90	95.699	Seriola_lalandi_dorsalis
ENSLACG00000015700	LSM7	100	94.175	ENSSPAG00000015221	lsm7	90	95.699	Stegastes_partitus
ENSLACG00000015700	LSM7	98	99.010	ENSSSCG00000013463	LSM7	99	99.010	Sus_scrofa
ENSLACG00000015700	LSM7	98	98.020	ENSTGUG00000000067	LSM7	100	98.020	Taeniopygia_guttata
ENSLACG00000015700	LSM7	100	94.175	ENSTRUG00000022913	lsm7	90	95.699	Takifugu_rubripes
ENSLACG00000015700	LSM7	100	94.175	ENSTNIG00000015525	lsm7	90	95.699	Tetraodon_nigroviridis
ENSLACG00000015700	LSM7	68	85.714	ENSTBEG00000016602	LSM7	100	85.714	Tupaia_belangeri
ENSLACG00000015700	LSM7	100	97.087	ENSUAMG00000000912	LSM7	86	97.087	Ursus_americanus
ENSLACG00000015700	LSM7	98	98.020	ENSUMAG00000006556	LSM7	79	98.020	Ursus_maritimus
ENSLACG00000015700	LSM7	69	97.183	ENSVVUG00000002640	LSM7	65	97.183	Vulpes_vulpes
ENSLACG00000015700	LSM7	98	96.040	ENSXETG00000022166	lsm7	100	96.040	Xenopus_tropicalis
ENSLACG00000015700	LSM7	98	97.030	ENSXCOG00000002572	lsm7	99	97.030	Xiphophorus_couchianus
ENSLACG00000015700	LSM7	100	96.117	ENSXMAG00000018630	lsm7	94	96.117	Xiphophorus_maculatus