EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000015861 (Gene tree)
Gene ID: 102357508
Gene Symbol: LSM4
Alias: zgc:73057|zgc:77848
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Minus strand
Length: 18210 bases
Position: chrJH126715.1:1377891-1396100
Accession: 102357508
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000018003	LSM	PF01423.22	6.7e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000018134	LSM4-201	4035	XM_005993155	ENSLACP00000018003	140 (aa)	XP_005993217	H3B7Y2

Gene Model

Click here to download ENSLACG00000015861's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm03018	RNA degradation	KEGG
lcm03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000015861's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000015861	LSM4	69	32.000	ENSLACG00000015064	LSM2	82	35.000
ENSLACG00000015861	LSM4	77	32.407	ENSLACG00000015192	SNRPD3	56	34.722

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000015861	LSM4	98	83.212	ENSG00000130520	LSM4	99	83.212	Homo_sapiens
ENSLACG00000015861	LSM4	71	97.980	ENSAPOG00000005643	lsm4	58	100.000	Acanthochromis_polyacanthus
ENSLACG00000015861	LSM4	97	83.088	ENSAMEG00000011162	LSM4	93	83.088	Ailuropoda_melanoleuca
ENSLACG00000015861	LSM4	71	97.980	ENSAOCG00000006414	lsm4	97	81.119	Amphiprion_ocellaris
ENSLACG00000015861	LSM4	71	97.980	ENSAPEG00000006238	lsm4	59	100.000	Amphiprion_percula
ENSLACG00000015861	LSM4	71	97.980	ENSATEG00000016559	lsm4	58	100.000	Anabas_testudineus
ENSLACG00000015861	LSM4	98	83.212	ENSANAG00000034659	LSM4	99	83.212	Aotus_nancymaae
ENSLACG00000015861	LSM4	99	83.562	ENSACLG00000022738	lsm4	97	83.099	Astatotilapia_calliptera
ENSLACG00000015861	LSM4	99	89.286	ENSAMXG00000016932	lsm4	96	85.507	Astyanax_mexicanus
ENSLACG00000015861	LSM4	98	83.212	ENSBTAG00000008578	LSM4	99	83.212	Bos_taurus
ENSLACG00000015861	LSM4	59	75.904	WBGene00003078	lsm-4	67	75.904	Caenorhabditis_elegans
ENSLACG00000015861	LSM4	98	83.212	ENSCJAG00000014171	LSM4	99	83.212	Callithrix_jacchus
ENSLACG00000015861	LSM4	98	83.212	ENSCAFG00000014900	LSM4	90	83.212	Canis_familiaris
ENSLACG00000015861	LSM4	98	83.212	ENSCAFG00020012137	LSM4	99	83.212	Canis_lupus_dingo
ENSLACG00000015861	LSM4	97	83.088	ENSCHIG00000010928	LSM4	90	83.088	Capra_hircus
ENSLACG00000015861	LSM4	98	82.482	ENSTSYG00000030906	LSM4	99	82.482	Carlito_syrichta
ENSLACG00000015861	LSM4	96	82.963	ENSCAPG00000014140	LSM4	97	82.963	Cavia_aperea
ENSLACG00000015861	LSM4	96	82.963	ENSCPOG00000024117	LSM4	97	82.963	Cavia_porcellus
ENSLACG00000015861	LSM4	98	83.212	ENSCCAG00000036308	LSM4	99	83.212	Cebus_capucinus
ENSLACG00000015861	LSM4	98	83.212	ENSCATG00000029311	LSM4	99	83.212	Cercocebus_atys
ENSLACG00000015861	LSM4	98	81.022	ENSCLAG00000010828	LSM4	99	81.022	Chinchilla_lanigera
ENSLACG00000015861	LSM4	98	83.212	ENSCSAG00000005370	LSM4	99	83.212	Chlorocebus_sabaeus
ENSLACG00000015861	LSM4	96	97.037	ENSCPBG00000012925	LSM4	97	97.037	Chrysemys_picta_bellii
ENSLACG00000015861	LSM4	61	93.023	ENSCING00000007519	-	69	93.182	Ciona_intestinalis
ENSLACG00000015861	LSM4	61	93.023	ENSCSAVG00000008596	-	70	93.182	Ciona_savignyi
ENSLACG00000015861	LSM4	98	83.212	ENSCANG00000043686	LSM4	99	83.212	Colobus_angolensis_palliatus
ENSLACG00000015861	LSM4	98	81.022	ENSCGRG00001014436	Lsm4	99	81.022	Cricetulus_griseus_chok1gshd
ENSLACG00000015861	LSM4	97	80.882	ENSCGRG00000009398	Lsm4	99	80.882	Cricetulus_griseus_crigri
ENSLACG00000015861	LSM4	99	83.453	ENSCSEG00000016127	lsm4	96	83.942	Cynoglossus_semilaevis
ENSLACG00000015861	LSM4	99	86.620	ENSCVAG00000010601	lsm4	97	82.857	Cyprinodon_variegatus
ENSLACG00000015861	LSM4	89	81.890	ENSCVAG00000021828	lsm4	94	80.800	Cyprinodon_variegatus
ENSLACG00000015861	LSM4	96	86.525	ENSDARG00000023852	lsm4	99	87.234	Danio_rerio
ENSLACG00000015861	LSM4	98	81.752	ENSDORG00000024225	Lsm4	99	81.752	Dipodomys_ordii
ENSLACG00000015861	LSM4	69	81.443	FBgn0032240	CG17768	57	87.500	Drosophila_melanogaster
ENSLACG00000015861	LSM4	87	81.148	ENSETEG00000007762	-	98	81.148	Echinops_telfairi
ENSLACG00000015861	LSM4	54	93.333	ENSEBUG00000003639	-	53	88.750	Eptatretus_burgeri
ENSLACG00000015861	LSM4	100	82.857	ENSECAG00000010141	LSM4	56	83.212	Equus_caballus
ENSLACG00000015861	LSM4	94	89.552	ENSELUG00000012821	lsm4	100	85.821	Esox_lucius
ENSLACG00000015861	LSM4	98	83.212	ENSFCAG00000040580	LSM4	99	83.212	Felis_catus
ENSLACG00000015861	LSM4	96	97.015	ENSFALG00000009478	LSM4	96	97.015	Ficedula_albicollis
ENSLACG00000015861	LSM4	97	82.353	ENSFDAG00000010124	LSM4	99	82.353	Fukomys_damarensis
ENSLACG00000015861	LSM4	69	98.958	ENSGMOG00000007729	lsm4	59	100.000	Gadus_morhua
ENSLACG00000015861	LSM4	96	97.037	ENSGALG00000003385	LSM4	97	97.037	Gallus_gallus
ENSLACG00000015861	LSM4	99	85.211	ENSGAFG00000004903	lsm4	55	95.890	Gambusia_affinis
ENSLACG00000015861	LSM4	68	98.947	ENSGACG00000008140	lsm4	59	100.000	Gasterosteus_aculeatus
ENSLACG00000015861	LSM4	96	97.037	ENSGAGG00000017812	LSM4	97	97.037	Gopherus_agassizii
ENSLACG00000015861	LSM4	98	83.212	ENSGGOG00000012914	-	99	83.212	Gorilla_gorilla
ENSLACG00000015861	LSM4	99	84.138	ENSHBUG00000008858	lsm4	77	83.688	Haplochromis_burtoni
ENSLACG00000015861	LSM4	98	81.022	ENSHGLG00000006568	LSM4	99	81.022	Heterocephalus_glaber_female
ENSLACG00000015861	LSM4	66	97.849	ENSHGLG00100007894	LSM4	100	97.849	Heterocephalus_glaber_male
ENSLACG00000015861	LSM4	99	82.734	ENSHCOG00000008819	lsm4	96	83.212	Hippocampus_comes
ENSLACG00000015861	LSM4	99	89.286	ENSIPUG00000005368	Lsm4	96	85.507	Ictalurus_punctatus
ENSLACG00000015861	LSM4	98	83.212	ENSSTOG00000016494	LSM4	99	83.212	Ictidomys_tridecemlineatus
ENSLACG00000015861	LSM4	98	81.752	ENSJJAG00000017420	Lsm4	99	81.752	Jaculus_jaculus
ENSLACG00000015861	LSM4	61	98.837	ENSKMAG00000005073	lsm4	61	98.864	Kryptolebias_marmoratus
ENSLACG00000015861	LSM4	71	97.980	ENSLBEG00000027930	lsm4	59	100.000	Labrus_bergylta
ENSLACG00000015861	LSM4	92	91.473	ENSLOCG00000002025	lsm4	98	87.770	Lepisosteus_oculatus
ENSLACG00000015861	LSM4	97	83.088	ENSLAFG00000017459	LSM4	98	83.088	Loxodonta_africana
ENSLACG00000015861	LSM4	98	83.212	ENSMFAG00000031194	LSM4	99	83.212	Macaca_fascicularis
ENSLACG00000015861	LSM4	98	83.212	ENSMMUG00000004405	LSM4	99	83.212	Macaca_mulatta
ENSLACG00000015861	LSM4	98	83.212	ENSMNEG00000042899	LSM4	99	83.212	Macaca_nemestrina
ENSLACG00000015861	LSM4	98	83.212	ENSMLEG00000027948	LSM4	99	83.212	Mandrillus_leucophaeus
ENSLACG00000015861	LSM4	99	84.173	ENSMAMG00000006190	lsm4	96	84.672	Mastacembelus_armatus
ENSLACG00000015861	LSM4	99	84.138	ENSMZEG00005016420	lsm4	97	83.688	Maylandia_zebra
ENSLACG00000015861	LSM4	96	96.296	ENSMGAG00000004976	LSM4	96	96.296	Meleagris_gallopavo
ENSLACG00000015861	LSM4	98	82.482	ENSMICG00000000222	LSM4	99	82.482	Microcebus_murinus
ENSLACG00000015861	LSM4	98	81.022	ENSMOCG00000020861	Lsm4	99	81.022	Microtus_ochrogaster
ENSLACG00000015861	LSM4	87	83.607	ENSMODG00000015044	-	98	83.607	Monodelphis_domestica
ENSLACG00000015861	LSM4	99	82.143	ENSMALG00000018159	lsm4	62	98.864	Monopterus_albus
ENSLACG00000015861	LSM4	98	81.022	MGP_CAROLIEiJ_G0031158	Lsm4	99	81.022	Mus_caroli
ENSLACG00000015861	LSM4	98	81.022	ENSMUSG00000031848	Lsm4	99	81.022	Mus_musculus
ENSLACG00000015861	LSM4	98	81.022	MGP_PahariEiJ_G0021623	Lsm4	99	81.022	Mus_pahari
ENSLACG00000015861	LSM4	98	81.022	MGP_SPRETEiJ_G0032276	Lsm4	99	81.022	Mus_spretus
ENSLACG00000015861	LSM4	98	83.212	ENSMPUG00000015589	LSM4	99	83.212	Mustela_putorius_furo
ENSLACG00000015861	LSM4	97	83.088	ENSMLUG00000004010	LSM4	98	83.088	Myotis_lucifugus
ENSLACG00000015861	LSM4	98	81.022	ENSNGAG00000008644	Lsm4	99	81.022	Nannospalax_galili
ENSLACG00000015861	LSM4	70	97.959	ENSNBRG00000022150	lsm4	54	100.000	Neolamprologus_brichardi
ENSLACG00000015861	LSM4	87	79.508	ENSMEUG00000013229	LSM4	98	79.508	Notamacropus_eugenii
ENSLACG00000015861	LSM4	56	96.154	ENSOPRG00000005575	LSM4	98	72.951	Ochotona_princeps
ENSLACG00000015861	LSM4	98	69.343	ENSODEG00000004519	-	99	72.993	Octodon_degus
ENSLACG00000015861	LSM4	98	66.667	ENSODEG00000011712	-	98	66.667	Octodon_degus
ENSLACG00000015861	LSM4	98	81.752	ENSODEG00000020549	-	99	81.752	Octodon_degus
ENSLACG00000015861	LSM4	99	83.562	ENSONIG00000012724	lsm4	97	83.099	Oreochromis_niloticus
ENSLACG00000015861	LSM4	62	94.505	ENSOANG00000007434	LSM4	78	94.505	Ornithorhynchus_anatinus
ENSLACG00000015861	LSM4	99	86.014	ENSORLG00000008391	lsm4	97	82.270	Oryzias_latipes
ENSLACG00000015861	LSM4	99	86.014	ENSORLG00020014829	lsm4	97	82.734	Oryzias_latipes_hni
ENSLACG00000015861	LSM4	99	86.014	ENSORLG00015010205	lsm4	97	82.734	Oryzias_latipes_hsok
ENSLACG00000015861	LSM4	100	84.286	ENSOMEG00000003606	lsm4	61	98.864	Oryzias_melastigma
ENSLACG00000015861	LSM4	71	95.960	ENSOGAG00000027992	LSM4	94	79.562	Otolemur_garnettii
ENSLACG00000015861	LSM4	62	98.851	ENSOARG00000012553	LSM4	94	81.667	Ovis_aries
ENSLACG00000015861	LSM4	98	83.212	ENSPPAG00000044045	-	99	83.212	Pan_paniscus
ENSLACG00000015861	LSM4	98	83.212	ENSPPRG00000018264	LSM4	99	83.212	Panthera_pardus
ENSLACG00000015861	LSM4	97	83.088	ENSPTIG00000006306	LSM4	99	83.088	Panthera_tigris_altaica
ENSLACG00000015861	LSM4	98	83.212	ENSPTRG00000031470	LSM4	99	83.212	Pan_troglodytes
ENSLACG00000015861	LSM4	98	83.212	ENSPANG00000014399	LSM4	99	83.212	Papio_anubis
ENSLACG00000015861	LSM4	99	91.367	ENSPKIG00000006154	lsm4	96	86.861	Paramormyrops_kingsleyae
ENSLACG00000015861	LSM4	96	96.269	ENSPSIG00000012358	LSM4	97	96.269	Pelodiscus_sinensis
ENSLACG00000015861	LSM4	98	81.022	ENSPEMG00000001358	Lsm4	99	81.022	Peromyscus_maniculatus_bairdii
ENSLACG00000015861	LSM4	99	87.324	ENSPLAG00000016267	lsm4	62	100.000	Poecilia_latipinna
ENSLACG00000015861	LSM4	99	85.915	ENSPMEG00000016378	lsm4	63	100.000	Poecilia_mexicana
ENSLACG00000015861	LSM4	98	83.212	ENSPPYG00000009736	LSM4	99	83.212	Pongo_abelii
ENSLACG00000015861	LSM4	87	81.148	ENSPCAG00000008513	LSM4	98	81.148	Procavia_capensis
ENSLACG00000015861	LSM4	98	82.482	ENSPCOG00000019837	LSM4	99	82.482	Propithecus_coquereli
ENSLACG00000015861	LSM4	98	83.212	ENSPVAG00000015383	LSM4	99	83.212	Pteropus_vampyrus
ENSLACG00000015861	LSM4	99	84.138	ENSPNYG00000016794	lsm4	97	83.688	Pundamilia_nyererei
ENSLACG00000015861	LSM4	95	88.806	ENSPNAG00000016598	lsm4	99	85.075	Pygocentrus_nattereri
ENSLACG00000015861	LSM4	98	81.022	ENSRNOG00000019572	Lsm4	99	81.022	Rattus_norvegicus
ENSLACG00000015861	LSM4	98	83.212	ENSRBIG00000024717	LSM4	99	83.212	Rhinopithecus_bieti
ENSLACG00000015861	LSM4	98	83.212	ENSRROG00000045706	LSM4	99	83.212	Rhinopithecus_roxellana
ENSLACG00000015861	LSM4	59	40.860	YER112W	LSM4	52	40.206	Saccharomyces_cerevisiae
ENSLACG00000015861	LSM4	88	81.301	ENSSBOG00000022455	LSM4	98	81.301	Saimiri_boliviensis_boliviensis
ENSLACG00000015861	LSM4	98	85.401	ENSSHAG00000011559	LSM4	99	85.401	Sarcophilus_harrisii
ENSLACG00000015861	LSM4	99	89.928	ENSSFOG00015021067	lsm4	98	84.892	Scleropages_formosus
ENSLACG00000015861	LSM4	71	96.970	ENSSMAG00000021020	lsm4	59	100.000	Scophthalmus_maximus
ENSLACG00000015861	LSM4	71	97.980	ENSSDUG00000009588	lsm4	53	100.000	Seriola_dumerili
ENSLACG00000015861	LSM4	71	97.980	ENSSLDG00000006827	lsm4	52	100.000	Seriola_lalandi_dorsalis
ENSLACG00000015861	LSM4	92	81.061	ENSSPUG00000010166	LSM4	56	100.000	Sphenodon_punctatus
ENSLACG00000015861	LSM4	71	97.980	ENSSPAG00000011615	lsm4	58	100.000	Stegastes_partitus
ENSLACG00000015861	LSM4	98	83.212	ENSSSCG00000034314	LSM4	99	83.212	Sus_scrofa
ENSLACG00000015861	LSM4	99	85.211	ENSTRUG00000021737	lsm4	62	97.727	Takifugu_rubripes
ENSLACG00000015861	LSM4	99	83.099	ENSTNIG00000010191	lsm4	61	98.864	Tetraodon_nigroviridis
ENSLACG00000015861	LSM4	97	83.088	ENSUAMG00000000665	LSM4	91	95.495	Ursus_americanus
ENSLACG00000015861	LSM4	98	83.212	ENSUMAG00000009013	LSM4	99	83.212	Ursus_maritimus
ENSLACG00000015861	LSM4	97	83.088	ENSVVUG00000008136	LSM4	70	83.088	Vulpes_vulpes
ENSLACG00000015861	LSM4	98	93.431	ENSXETG00000024933	lsm4	99	89.051	Xenopus_tropicalis