EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000015945 (Gene tree)
Gene ID: -
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Minus strand
Length: 178048 bases
Position: chrJH126744.1:1407405-1585452
Accession: 17854
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000018099	Upf2	PF04050.14	1.2e-33	1	1
ENSLACP00000018099	MIF4G	PF02854.19	1.8e-46	1	2
ENSLACP00000018099	MIF4G	PF02854.19	1.8e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000018230	UPF2-201	4124	-	ENSLACP00000018099	1273 (aa)	-	H3B878

Gene Model

Click here to download ENSLACG00000015945's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000015945's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000015945	UPF2	100	79.092	ENSG00000151461	UPF2	91	81.169	Homo_sapiens
ENSLACG00000015945	UPF2	100	73.032	ENSAPOG00000015837	UPF2	99	72.374	Acanthochromis_polyacanthus
ENSLACG00000015945	UPF2	100	80.016	ENSAMEG00000004586	UPF2	99	79.781	Ailuropoda_melanoleuca
ENSLACG00000015945	UPF2	100	77.535	ENSACIG00000018078	UPF2	99	77.301	Amphilophus_citrinellus
ENSLACG00000015945	UPF2	100	77.457	ENSAOCG00000016766	UPF2	99	77.259	Amphiprion_ocellaris
ENSLACG00000015945	UPF2	100	77.535	ENSAPEG00000019084	UPF2	99	77.336	Amphiprion_percula
ENSLACG00000015945	UPF2	100	77.354	ENSATEG00000021677	UPF2	99	76.845	Anabas_testudineus
ENSLACG00000015945	UPF2	100	76.351	ENSAPLG00000010287	UPF2	90	80.328	Anas_platyrhynchos
ENSLACG00000015945	UPF2	100	79.545	ENSACAG00000009259	UPF2	99	79.310	Anolis_carolinensis
ENSLACG00000015945	UPF2	92	74.680	ENSANAG00000028451	UPF2	92	74.850	Aotus_nancymaae
ENSLACG00000015945	UPF2	100	77.613	ENSACLG00000012696	UPF2	99	77.379	Astatotilapia_calliptera
ENSLACG00000015945	UPF2	100	77.578	ENSAMXG00000013700	UPF2	99	77.578	Astyanax_mexicanus
ENSLACG00000015945	UPF2	100	79.937	ENSBTAG00000000288	UPF2	99	80.016	Bos_taurus
ENSLACG00000015945	UPF2	100	78.762	ENSCJAG00000020685	UPF2	99	78.527	Callithrix_jacchus
ENSLACG00000015945	UPF2	100	79.937	ENSCAFG00000004839	UPF2	99	79.702	Canis_familiaris
ENSLACG00000015945	UPF2	95	88.083	ENSCAFG00020005882	UPF2	99	85.500	Canis_lupus_dingo
ENSLACG00000015945	UPF2	100	79.859	ENSCHIG00000020359	UPF2	99	79.937	Capra_hircus
ENSLACG00000015945	UPF2	94	92.265	ENSTSYG00000000935	UPF2	97	88.947	Carlito_syrichta
ENSLACG00000015945	UPF2	92	71.563	ENSCAPG00000016658	UPF2	94	71.429	Cavia_aperea
ENSLACG00000015945	UPF2	99	77.176	ENSCPOG00000008809	UPF2	91	79.675	Cavia_porcellus
ENSLACG00000015945	UPF2	97	80.328	ENSCCAG00000035991	UPF2	99	80.690	Cebus_capucinus
ENSLACG00000015945	UPF2	100	79.327	ENSCATG00000032679	UPF2	99	77.743	Cercocebus_atys
ENSLACG00000015945	UPF2	100	78.762	ENSCLAG00000011434	UPF2	99	78.918	Chinchilla_lanigera
ENSLACG00000015945	UPF2	100	79.327	ENSCSAG00000013372	UPF2	99	77.839	Chlorocebus_sabaeus
ENSLACG00000015945	UPF2	76	86.802	ENSCHOG00000000422	UPF2	78	85.930	Choloepus_hoffmanni
ENSLACG00000015945	UPF2	100	78.762	ENSCPBG00000027823	UPF2	92	82.115	Chrysemys_picta_bellii
ENSLACG00000015945	UPF2	79	43.359	ENSCSAVG00000007772	-	99	42.718	Ciona_savignyi
ENSLACG00000015945	UPF2	100	76.194	ENSCANG00000040396	UPF2	99	73.520	Colobus_angolensis_palliatus
ENSLACG00000015945	UPF2	100	79.922	ENSCGRG00001019347	Upf2	99	80.000	Cricetulus_griseus_chok1gshd
ENSLACG00000015945	UPF2	100	79.922	ENSCGRG00000017993	Upf2	99	80.000	Cricetulus_griseus_crigri
ENSLACG00000015945	UPF2	99	72.153	ENSCSEG00000003520	UPF2	91	72.571	Cynoglossus_semilaevis
ENSLACG00000015945	UPF2	99	76.701	ENSCVAG00000006167	UPF2	98	76.929	Cyprinodon_variegatus
ENSLACG00000015945	UPF2	100	79.781	ENSDNOG00000018160	UPF2	99	79.859	Dasypus_novemcinctus
ENSLACG00000015945	UPF2	100	79.765	ENSDORG00000002478	Upf2	99	79.529	Dipodomys_ordii
ENSLACG00000015945	UPF2	61	91.509	ENSETEG00000011583	-	57	79.699	Echinops_telfairi
ENSLACG00000015945	UPF2	64	73.510	ENSEBUG00000012448	-	89	73.510	Eptatretus_burgeri
ENSLACG00000015945	UPF2	100	78.683	ENSEASG00005019274	UPF2	99	79.389	Equus_asinus_asinus
ENSLACG00000015945	UPF2	100	78.683	ENSECAG00000017022	UPF2	99	79.389	Equus_caballus
ENSLACG00000015945	UPF2	82	77.215	ENSEEUG00000007819	UPF2	73	77.578	Erinaceus_europaeus
ENSLACG00000015945	UPF2	100	75.350	ENSELUG00000012014	UPF2	99	76.383	Esox_lucius
ENSLACG00000015945	UPF2	97	93.258	ENSFCAG00000005785	UPF2	87	93.258	Felis_catus
ENSLACG00000015945	UPF2	100	80.956	ENSFALG00000001889	UPF2	97	80.203	Ficedula_albicollis
ENSLACG00000015945	UPF2	100	77.882	ENSFDAG00000014348	UPF2	91	80.895	Fukomys_damarensis
ENSLACG00000015945	UPF2	99	76.507	ENSFHEG00000009826	UPF2	98	77.247	Fundulus_heteroclitus
ENSLACG00000015945	UPF2	91	76.415	ENSGMOG00000005557	UPF2	90	77.358	Gadus_morhua
ENSLACG00000015945	UPF2	100	81.363	ENSGALG00000033772	UPF2	99	80.893	Gallus_gallus
ENSLACG00000015945	UPF2	99	75.526	ENSGAFG00000020867	UPF2	91	77.226	Gambusia_affinis
ENSLACG00000015945	UPF2	91	77.114	ENSGACG00000001080	UPF2	99	75.774	Gasterosteus_aculeatus
ENSLACG00000015945	UPF2	100	79.859	ENSGAGG00000002700	UPF2	99	80.172	Gopherus_agassizii
ENSLACG00000015945	UPF2	100	79.092	ENSGGOG00000001479	UPF2	91	81.169	Gorilla_gorilla
ENSLACG00000015945	UPF2	100	77.691	ENSHBUG00000004249	UPF2	99	77.457	Haplochromis_burtoni
ENSLACG00000015945	UPF2	100	78.918	ENSHGLG00000015176	-	99	78.997	Heterocephalus_glaber_female
ENSLACG00000015945	UPF2	100	69.255	ENSHGLG00000003822	-	99	69.490	Heterocephalus_glaber_female
ENSLACG00000015945	UPF2	100	75.604	ENSHGLG00100010036	UPF2	93	78.468	Heterocephalus_glaber_male
ENSLACG00000015945	UPF2	100	75.058	ENSHCOG00000004025	UPF2	90	76.587	Hippocampus_comes
ENSLACG00000015945	UPF2	100	76.094	ENSIPUG00000015524	UPF2	99	76.016	Ictalurus_punctatus
ENSLACG00000015945	UPF2	100	80.235	ENSSTOG00000013075	UPF2	99	80.000	Ictidomys_tridecemlineatus
ENSLACG00000015945	UPF2	100	78.745	ENSJJAG00000004913	Upf2	99	78.745	Jaculus_jaculus
ENSLACG00000015945	UPF2	99	75.507	ENSKMAG00000001071	UPF2	99	75.254	Kryptolebias_marmoratus
ENSLACG00000015945	UPF2	79	76.621	ENSLBEG00000000728	-	92	76.078	Labrus_bergylta
ENSLACG00000015945	UPF2	93	84.530	ENSLBEG00000016394	-	99	78.431	Labrus_bergylta
ENSLACG00000015945	UPF2	99	81.147	ENSLOCG00000015698	UPF2	99	81.540	Lepisosteus_oculatus
ENSLACG00000015945	UPF2	100	79.248	ENSMFAG00000043865	UPF2	99	77.561	Macaca_fascicularis
ENSLACG00000015945	UPF2	100	79.248	ENSMMUG00000008241	UPF2	99	77.561	Macaca_mulatta
ENSLACG00000015945	UPF2	80	79.746	ENSMNEG00000008062	UPF2	99	77.789	Macaca_nemestrina
ENSLACG00000015945	UPF2	100	79.232	ENSMLEG00000036120	UPF2	99	82.057	Mandrillus_leucophaeus
ENSLACG00000015945	UPF2	100	76.708	ENSMAMG00000018276	UPF2	99	76.475	Mastacembelus_armatus
ENSLACG00000015945	UPF2	100	77.613	ENSMZEG00005021595	UPF2	99	77.379	Maylandia_zebra
ENSLACG00000015945	UPF2	99	80.078	ENSMGAG00000004573	UPF2	99	80.157	Meleagris_gallopavo
ENSLACG00000015945	UPF2	100	77.804	ENSMAUG00000016512	Upf2	99	77.882	Mesocricetus_auratus
ENSLACG00000015945	UPF2	95	89.119	ENSMICG00000001716	UPF2	99	86.500	Microcebus_murinus
ENSLACG00000015945	UPF2	100	78.902	ENSMOCG00000008263	Upf2	99	79.451	Microtus_ochrogaster
ENSLACG00000015945	UPF2	100	74.708	ENSMMOG00000006528	UPF2	91	75.365	Mola_mola
ENSLACG00000015945	UPF2	100	80.721	ENSMODG00000016794	UPF2	99	80.595	Monodelphis_domestica
ENSLACG00000015945	UPF2	99	76.365	ENSMALG00000002663	UPF2	99	76.053	Monopterus_albus
ENSLACG00000015945	UPF2	100	79.451	MGP_CAROLIEiJ_G0023157	Upf2	99	81.147	Mus_caroli
ENSLACG00000015945	UPF2	100	79.686	ENSMUSG00000043241	Upf2	99	79.561	Mus_musculus
ENSLACG00000015945	UPF2	100	79.294	MGP_PahariEiJ_G0019217	Upf2	99	79.373	Mus_pahari
ENSLACG00000015945	UPF2	100	79.843	MGP_SPRETEiJ_G0024075	Upf2	99	79.718	Mus_spretus
ENSLACG00000015945	UPF2	100	79.937	ENSMPUG00000001064	UPF2	99	79.702	Mustela_putorius_furo
ENSLACG00000015945	UPF2	100	79.844	ENSMLUG00000000228	UPF2	99	79.375	Myotis_lucifugus
ENSLACG00000015945	UPF2	100	77.691	ENSNBRG00000013629	UPF2	99	77.457	Neolamprologus_brichardi
ENSLACG00000015945	UPF2	100	79.170	ENSNLEG00000012058	UPF2	99	77.682	Nomascus_leucogenys
ENSLACG00000015945	UPF2	73	88.865	ENSOPRG00000006801	-	73	88.865	Ochotona_princeps
ENSLACG00000015945	UPF2	100	78.213	ENSODEG00000001290	UPF2	91	80.825	Octodon_degus
ENSLACG00000015945	UPF2	100	77.535	ENSONIG00000017991	UPF2	99	77.103	Oreochromis_niloticus
ENSLACG00000015945	UPF2	100	79.232	ENSOCUG00000006230	UPF2	99	79.389	Oryctolagus_cuniculus
ENSLACG00000015945	UPF2	99	76.246	ENSORLG00000017189	UPF2	91	77.882	Oryzias_latipes
ENSLACG00000015945	UPF2	99	76.324	ENSORLG00020005969	UPF2	91	78.053	Oryzias_latipes_hni
ENSLACG00000015945	UPF2	99	76.324	ENSORLG00015005713	UPF2	91	77.968	Oryzias_latipes_hsok
ENSLACG00000015945	UPF2	99	72.876	ENSOMEG00000023420	UPF2	88	74.444	Oryzias_melastigma
ENSLACG00000015945	UPF2	100	79.467	ENSOGAG00000005796	UPF2	99	79.467	Otolemur_garnettii
ENSLACG00000015945	UPF2	100	79.734	ENSOARG00000014587	UPF2	99	79.812	Ovis_aries
ENSLACG00000015945	UPF2	100	79.075	ENSPPAG00000037953	UPF2	91	80.637	Pan_paniscus
ENSLACG00000015945	UPF2	100	79.937	ENSPPRG00000000690	UPF2	99	79.702	Panthera_pardus
ENSLACG00000015945	UPF2	100	79.937	ENSPTIG00000008867	UPF2	99	79.702	Panthera_tigris_altaica
ENSLACG00000015945	UPF2	100	79.092	ENSPTRG00000002291	UPF2	91	81.169	Pan_troglodytes
ENSLACG00000015945	UPF2	100	79.327	ENSPANG00000023399	UPF2	99	77.743	Papio_anubis
ENSLACG00000015945	UPF2	99	76.641	ENSPKIG00000025502	UPF2	99	76.172	Paramormyrops_kingsleyae
ENSLACG00000015945	UPF2	59	83.489	ENSPSIG00000015158	UPF2	95	83.489	Pelodiscus_sinensis
ENSLACG00000015945	UPF2	99	75.235	ENSPMGG00000005259	UPF2	91	76.672	Periophthalmus_magnuspinnatus
ENSLACG00000015945	UPF2	93	81.176	ENSPEMG00000015731	Upf2	99	81.176	Peromyscus_maniculatus_bairdii
ENSLACG00000015945	UPF2	100	80.329	ENSPCIG00000006656	UPF2	99	80.408	Phascolarctos_cinereus
ENSLACG00000015945	UPF2	99	76.090	ENSPFOG00000017118	UPF2	99	75.857	Poecilia_formosa
ENSLACG00000015945	UPF2	99	76.150	ENSPLAG00000005094	UPF2	99	75.916	Poecilia_latipinna
ENSLACG00000015945	UPF2	99	76.150	ENSPMEG00000017009	UPF2	99	75.916	Poecilia_mexicana
ENSLACG00000015945	UPF2	99	75.838	ENSPREG00000021880	UPF2	99	75.682	Poecilia_reticulata
ENSLACG00000015945	UPF2	66	78.081	ENSPPYG00000002089	-	99	78.199	Pongo_abelii
ENSLACG00000015945	UPF2	94	74.214	ENSPCAG00000000684	UPF2	85	73.723	Procavia_capensis
ENSLACG00000015945	UPF2	94	93.750	ENSPCOG00000021656	UPF2	99	78.667	Propithecus_coquereli
ENSLACG00000015945	UPF2	100	73.589	ENSPVAG00000017286	UPF2	99	73.668	Pteropus_vampyrus
ENSLACG00000015945	UPF2	100	75.195	ENSPNYG00000017096	UPF2	99	74.961	Pundamilia_nyererei
ENSLACG00000015945	UPF2	100	78.203	ENSPNAG00000009357	UPF2	99	77.734	Pygocentrus_nattereri
ENSLACG00000015945	UPF2	100	75.078	ENSRNOG00000023593	Upf2	98	100.000	Rattus_norvegicus
ENSLACG00000015945	UPF2	100	78.431	ENSRBIG00000037780	UPF2	99	77.056	Rhinopithecus_bieti
ENSLACG00000015945	UPF2	100	79.389	ENSRROG00000043547	UPF2	99	77.821	Rhinopithecus_roxellana
ENSLACG00000015945	UPF2	94	93.182	ENSSBOG00000020012	UPF2	99	78.622	Saimiri_boliviensis_boliviensis
ENSLACG00000015945	UPF2	99	75.663	ENSSFOG00015023788	upf2	98	77.627	Scleropages_formosus
ENSLACG00000015945	UPF2	90	75.948	ENSSMAG00000007637	UPF2	99	74.690	Scophthalmus_maximus
ENSLACG00000015945	UPF2	93	84.831	ENSSDUG00000017244	UPF2	99	76.869	Seriola_dumerili
ENSLACG00000015945	UPF2	100	75.488	ENSSLDG00000016866	UPF2	99	74.903	Seriola_lalandi_dorsalis
ENSLACG00000015945	UPF2	100	78.605	ENSSARG00000008615	UPF2	99	78.605	Sorex_araneus
ENSLACG00000015945	UPF2	94	92.179	ENSSPUG00000014544	UPF2	98	77.508	Sphenodon_punctatus
ENSLACG00000015945	UPF2	69	78.653	ENSSSCG00000011117	-	99	77.677	Sus_scrofa
ENSLACG00000015945	UPF2	99	80.863	ENSTGUG00000002163	-	99	80.471	Taeniopygia_guttata
ENSLACG00000015945	UPF2	100	76.893	ENSTRUG00000007519	UPF2	99	76.815	Takifugu_rubripes
ENSLACG00000015945	UPF2	100	74.591	ENSTNIG00000004453	UPF2	94	78.015	Tetraodon_nigroviridis
ENSLACG00000015945	UPF2	93	73.547	ENSTBEG00000012679	UPF2	93	73.087	Tupaia_belangeri
ENSLACG00000015945	UPF2	100	78.213	ENSTTRG00000016388	UPF2	99	79.232	Tursiops_truncatus
ENSLACG00000015945	UPF2	87	100.000	ENSUAMG00000023560	UPF2	95	100.000	Ursus_americanus
ENSLACG00000015945	UPF2	100	79.937	ENSUMAG00000012953	UPF2	95	79.702	Ursus_maritimus
ENSLACG00000015945	UPF2	82	96.774	ENSVPAG00000006763	UPF2	82	96.774	Vicugna_pacos
ENSLACG00000015945	UPF2	100	79.937	ENSVVUG00000006166	UPF2	99	79.702	Vulpes_vulpes
ENSLACG00000015945	UPF2	100	76.209	ENSXETG00000033103	UPF2	91	80.911	Xenopus_tropicalis
ENSLACG00000015945	UPF2	99	75.604	ENSXCOG00000011604	UPF2	91	77.654	Xiphophorus_couchianus
ENSLACG00000015945	UPF2	99	75.838	ENSXMAG00000017209	UPF2	91	77.568	Xiphophorus_maculatus