EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000016317 (Gene tree)
Gene ID: -
Gene Symbol: PRPF4
Alias: HPRP4|HPRP4P|PRP4|Prp4p|SNRNP60
Full Name: pre-mRNA processing factor 4
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 30949 bases
Position: chrJH126770.1:1528540-1559488
Accession: 17349
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000018534	PRP4	PF08799.11	3.8e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000018667	PRPF4-201	1738	-	ENSLACP00000018534	523 (aa)	-	H3B9G3

Gene Model

Click here to download ENSLACG00000016317's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000016317's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000016317	PRPF4	52	31.875	ENSLACG00000018788	POC1A	88	30.851
ENSLACG00000016317	PRPF4	53	30.038	ENSLACG00000018863	WDR5B	90	30.038

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000016317	PRPF4	99	80.539	ENSG00000136875	PRPF4	99	80.539	Homo_sapiens
ENSLACG00000016317	PRPF4	97	72.634	ENSAPOG00000014132	prpf4	99	72.634	Acanthochromis_polyacanthus
ENSLACG00000016317	PRPF4	99	80.347	ENSAMEG00000013048	PRPF4	97	80.347	Ailuropoda_melanoleuca
ENSLACG00000016317	PRPF4	97	73.438	ENSACIG00000005579	prpf4	100	73.438	Amphilophus_citrinellus
ENSLACG00000016317	PRPF4	97	71.930	ENSAOCG00000005457	prpf4	100	71.930	Amphiprion_ocellaris
ENSLACG00000016317	PRPF4	97	71.735	ENSAPEG00000000776	prpf4	100	71.735	Amphiprion_percula
ENSLACG00000016317	PRPF4	97	72.266	ENSATEG00000023013	prpf4	100	72.266	Anabas_testudineus
ENSLACG00000016317	PRPF4	98	79.492	ENSAPLG00000006534	PRPF4	95	79.492	Anas_platyrhynchos
ENSLACG00000016317	PRPF4	98	79.110	ENSACAG00000015110	PRPF4	99	79.110	Anolis_carolinensis
ENSLACG00000016317	PRPF4	99	80.347	ENSANAG00000022464	PRPF4	95	80.347	Aotus_nancymaae
ENSLACG00000016317	PRPF4	97	72.266	ENSACLG00000019031	prpf4	100	72.266	Astatotilapia_calliptera
ENSLACG00000016317	PRPF4	97	60.549	ENSAMXG00000006756	prpf4	100	70.334	Astyanax_mexicanus
ENSLACG00000016317	PRPF4	98	80.971	ENSBTAG00000004571	PRPF4	99	80.539	Bos_taurus
ENSLACG00000016317	PRPF4	90	42.227	WBGene00007972	prp-4	96	42.138	Caenorhabditis_elegans
ENSLACG00000016317	PRPF4	98	81.055	ENSCJAG00000017856	PRPF4	98	81.055	Callithrix_jacchus
ENSLACG00000016317	PRPF4	99	80.347	ENSCAFG00000003224	PRPF4	96	80.347	Canis_familiaris
ENSLACG00000016317	PRPF4	99	80.347	ENSCAFG00020022637	PRPF4	99	80.347	Canis_lupus_dingo
ENSLACG00000016317	PRPF4	98	81.445	ENSCHIG00000024648	-	98	81.445	Capra_hircus
ENSLACG00000016317	PRPF4	99	80.347	ENSTSYG00000010366	PRPF4	99	80.347	Carlito_syrichta
ENSLACG00000016317	PRPF4	88	76.102	ENSCAPG00000008935	PRPF4	97	77.197	Cavia_aperea
ENSLACG00000016317	PRPF4	99	74.423	ENSCPOG00000014729	-	99	74.423	Cavia_porcellus
ENSLACG00000016317	PRPF4	99	80.154	ENSCPOG00000010747	-	99	80.154	Cavia_porcellus
ENSLACG00000016317	PRPF4	99	80.347	ENSCCAG00000028990	PRPF4	99	80.347	Cebus_capucinus
ENSLACG00000016317	PRPF4	97	81.657	ENSCATG00000021552	PRPF4	99	80.347	Cercocebus_atys
ENSLACG00000016317	PRPF4	99	80.539	ENSCLAG00000013448	PRPF4	99	80.539	Chinchilla_lanigera
ENSLACG00000016317	PRPF4	87	79.956	ENSCHOG00000007233	PRPF4	100	79.956	Choloepus_hoffmanni
ENSLACG00000016317	PRPF4	98	79.688	ENSCPBG00000019136	PRPF4	73	79.688	Chrysemys_picta_bellii
ENSLACG00000016317	PRPF4	94	57.916	ENSCING00000001299	-	95	57.056	Ciona_intestinalis
ENSLACG00000016317	PRPF4	96	56.445	ENSCSAVG00000009178	-	100	57.328	Ciona_savignyi
ENSLACG00000016317	PRPF4	99	80.347	ENSCANG00000003246	PRPF4	99	80.347	Colobus_angolensis_palliatus
ENSLACG00000016317	PRPF4	99	80.347	ENSCGRG00001016992	Prpf4	99	80.347	Cricetulus_griseus_chok1gshd
ENSLACG00000016317	PRPF4	99	80.347	ENSCGRG00000017560	Prpf4	99	80.347	Cricetulus_griseus_crigri
ENSLACG00000016317	PRPF4	97	71.373	ENSCSEG00000020451	prpf4	100	71.373	Cynoglossus_semilaevis
ENSLACG00000016317	PRPF4	97	77.407	ENSDARG00000067639	prpf4	100	77.407	Danio_rerio
ENSLACG00000016317	PRPF4	98	80.739	ENSDNOG00000013203	PRPF4	98	80.739	Dasypus_novemcinctus
ENSLACG00000016317	PRPF4	99	79.961	ENSDORG00000026275	Prpf4	99	79.961	Dipodomys_ordii
ENSLACG00000016317	PRPF4	97	49.367	FBgn0036733	U4-U6-60K	99	49.548	Drosophila_melanogaster
ENSLACG00000016317	PRPF4	98	80.350	ENSETEG00000020389	PRPF4	98	80.350	Echinops_telfairi
ENSLACG00000016317	PRPF4	97	68.161	ENSEBUG00000015229	prpf4	88	68.610	Eptatretus_burgeri
ENSLACG00000016317	PRPF4	99	80.347	ENSEASG00005022678	PRPF4	99	80.347	Equus_asinus_asinus
ENSLACG00000016317	PRPF4	99	80.347	ENSECAG00000007072	PRPF4	99	80.347	Equus_caballus
ENSLACG00000016317	PRPF4	82	80.342	ENSEEUG00000007480	PRPF4	80	80.342	Erinaceus_europaeus
ENSLACG00000016317	PRPF4	97	76.621	ENSELUG00000007510	prpf4	100	76.621	Esox_lucius
ENSLACG00000016317	PRPF4	98	81.055	ENSFCAG00000005514	PRPF4	98	81.055	Felis_catus
ENSLACG00000016317	PRPF4	98	76.339	ENSFALG00000005423	PRPF4	86	76.339	Ficedula_albicollis
ENSLACG00000016317	PRPF4	99	80.347	ENSFDAG00000005839	PRPF4	99	80.347	Fukomys_damarensis
ENSLACG00000016317	PRPF4	97	71.484	ENSFHEG00000001300	prpf4	100	71.484	Fundulus_heteroclitus
ENSLACG00000016317	PRPF4	98	79.883	ENSGALG00000008857	PRPF4	95	79.883	Gallus_gallus
ENSLACG00000016317	PRPF4	86	65.663	ENSGAFG00000012164	prpf4	70	65.663	Gambusia_affinis
ENSLACG00000016317	PRPF4	98	65.953	ENSGACG00000015476	prpf4	100	65.107	Gasterosteus_aculeatus
ENSLACG00000016317	PRPF4	98	79.883	ENSGAGG00000025029	PRPF4	94	79.883	Gopherus_agassizii
ENSLACG00000016317	PRPF4	99	80.539	ENSGGOG00000006943	PRPF4	99	80.539	Gorilla_gorilla
ENSLACG00000016317	PRPF4	97	72.070	ENSHBUG00000000562	prpf4	100	72.070	Haplochromis_burtoni
ENSLACG00000016317	PRPF4	98	66.731	ENSHGLG00000016628	-	98	66.925	Heterocephalus_glaber_female
ENSLACG00000016317	PRPF4	99	80.154	ENSHGLG00000015191	PRPF4	99	80.154	Heterocephalus_glaber_female
ENSLACG00000016317	PRPF4	99	65.896	ENSHGLG00000003838	-	99	65.896	Heterocephalus_glaber_female
ENSLACG00000016317	PRPF4	99	65.896	ENSHGLG00100005571	-	99	65.896	Heterocephalus_glaber_male
ENSLACG00000016317	PRPF4	97	75.835	ENSIPUG00000017956	PRPF4	100	75.835	Ictalurus_punctatus
ENSLACG00000016317	PRPF4	99	80.539	ENSSTOG00000027833	PRPF4	99	80.539	Ictidomys_tridecemlineatus
ENSLACG00000016317	PRPF4	99	80.539	ENSJJAG00000008838	Prpf4	99	80.539	Jaculus_jaculus
ENSLACG00000016317	PRPF4	97	71.875	ENSKMAG00000013236	prpf4	100	71.875	Kryptolebias_marmoratus
ENSLACG00000016317	PRPF4	97	70.980	ENSLBEG00000020611	prpf4	100	70.980	Labrus_bergylta
ENSLACG00000016317	PRPF4	97	77.210	ENSLOCG00000000581	prpf4	100	77.210	Lepisosteus_oculatus
ENSLACG00000016317	PRPF4	98	80.934	ENSLAFG00000018225	PRPF4	98	80.934	Loxodonta_africana
ENSLACG00000016317	PRPF4	97	81.460	ENSMFAG00000039397	PRPF4	99	80.154	Macaca_fascicularis
ENSLACG00000016317	PRPF4	97	81.657	ENSMMUG00000005844	PRPF4	99	80.347	Macaca_mulatta
ENSLACG00000016317	PRPF4	97	73.767	ENSMNEG00000033737	PRPF4	99	72.832	Macaca_nemestrina
ENSLACG00000016317	PRPF4	97	81.657	ENSMLEG00000040284	PRPF4	99	80.347	Mandrillus_leucophaeus
ENSLACG00000016317	PRPF4	97	72.461	ENSMAMG00000020141	prpf4	100	72.461	Mastacembelus_armatus
ENSLACG00000016317	PRPF4	97	72.266	ENSMZEG00005023205	prpf4	100	72.266	Maylandia_zebra
ENSLACG00000016317	PRPF4	98	79.297	ENSMGAG00000001796	PRPF4	95	79.297	Meleagris_gallopavo
ENSLACG00000016317	PRPF4	98	81.250	ENSMAUG00000018022	Prpf4	99	80.539	Mesocricetus_auratus
ENSLACG00000016317	PRPF4	98	80.469	ENSMICG00000015022	PRPF4	98	80.469	Microcebus_murinus
ENSLACG00000016317	PRPF4	99	80.154	ENSMOCG00000018273	Prpf4	99	80.154	Microtus_ochrogaster
ENSLACG00000016317	PRPF4	97	70.980	ENSMMOG00000021177	prpf4	100	70.980	Mola_mola
ENSLACG00000016317	PRPF4	98	80.588	ENSMODG00000025096	-	94	80.588	Monodelphis_domestica
ENSLACG00000016317	PRPF4	98	80.194	ENSMODG00000004444	-	97	80.784	Monodelphis_domestica
ENSLACG00000016317	PRPF4	97	71.875	ENSMALG00000013624	prpf4	100	71.875	Monopterus_albus
ENSLACG00000016317	PRPF4	99	80.539	MGP_CAROLIEiJ_G0026078	Prpf4	99	80.539	Mus_caroli
ENSLACG00000016317	PRPF4	99	80.539	ENSMUSG00000066148	Prpf4	99	80.539	Mus_musculus
ENSLACG00000016317	PRPF4	99	80.732	MGP_PahariEiJ_G0028413	Prpf4	99	80.732	Mus_pahari
ENSLACG00000016317	PRPF4	99	80.539	MGP_SPRETEiJ_G0027042	Prpf4	99	80.539	Mus_spretus
ENSLACG00000016317	PRPF4	99	80.347	ENSMPUG00000007883	PRPF4	99	80.347	Mustela_putorius_furo
ENSLACG00000016317	PRPF4	98	79.223	ENSMLUG00000008626	-	96	79.223	Myotis_lucifugus
ENSLACG00000016317	PRPF4	99	80.154	ENSMLUG00000015309	-	96	80.154	Myotis_lucifugus
ENSLACG00000016317	PRPF4	99	74.759	ENSNGAG00000000468	Prpf4	99	74.759	Nannospalax_galili
ENSLACG00000016317	PRPF4	97	72.461	ENSNBRG00000007972	prpf4	100	72.461	Neolamprologus_brichardi
ENSLACG00000016317	PRPF4	99	80.347	ENSNLEG00000016647	PRPF4	99	80.347	Nomascus_leucogenys
ENSLACG00000016317	PRPF4	98	79.806	ENSMEUG00000013256	PRPF4	99	80.392	Notamacropus_eugenii
ENSLACG00000016317	PRPF4	98	80.664	ENSOPRG00000005302	PRPF4	98	80.664	Ochotona_princeps
ENSLACG00000016317	PRPF4	99	80.539	ENSODEG00000018147	PRPF4	99	80.539	Octodon_degus
ENSLACG00000016317	PRPF4	98	72.125	ENSONIG00000012671	prpf4	100	72.266	Oreochromis_niloticus
ENSLACG00000016317	PRPF4	99	80.154	ENSOCUG00000005046	PRPF4	99	80.154	Oryctolagus_cuniculus
ENSLACG00000016317	PRPF4	97	70.784	ENSORLG00000019641	prpf4	100	70.784	Oryzias_latipes
ENSLACG00000016317	PRPF4	97	70.784	ENSORLG00020019438	prpf4	100	70.784	Oryzias_latipes_hni
ENSLACG00000016317	PRPF4	97	71.222	ENSOMEG00000020941	prpf4	100	71.222	Oryzias_melastigma
ENSLACG00000016317	PRPF4	99	76.301	ENSOGAG00000007802	PRPF4	97	76.301	Otolemur_garnettii
ENSLACG00000016317	PRPF4	98	81.165	ENSOARG00000006319	PRPF4	96	80.732	Ovis_aries
ENSLACG00000016317	PRPF4	99	80.539	ENSPPAG00000041797	PRPF4	99	80.539	Pan_paniscus
ENSLACG00000016317	PRPF4	99	80.347	ENSPPRG00000014360	PRPF4	99	80.347	Panthera_pardus
ENSLACG00000016317	PRPF4	99	80.347	ENSPTIG00000009574	PRPF4	99	80.347	Panthera_tigris_altaica
ENSLACG00000016317	PRPF4	99	80.539	ENSPTRG00000021274	PRPF4	98	81.250	Pan_troglodytes
ENSLACG00000016317	PRPF4	97	81.657	ENSPANG00000025776	PRPF4	95	80.347	Papio_anubis
ENSLACG00000016317	PRPF4	97	78.978	ENSPKIG00000017259	prpf4	100	78.978	Paramormyrops_kingsleyae
ENSLACG00000016317	PRPF4	99	79.383	ENSPSIG00000010713	PRPF4	91	79.383	Pelodiscus_sinensis
ENSLACG00000016317	PRPF4	97	53.432	ENSPMGG00000000997	prpf4	98	53.148	Periophthalmus_magnuspinnatus
ENSLACG00000016317	PRPF4	99	80.347	ENSPEMG00000024115	Prpf4	99	80.347	Peromyscus_maniculatus_bairdii
ENSLACG00000016317	PRPF4	99	79.691	ENSPCIG00000003821	PRPF4	100	79.691	Phascolarctos_cinereus
ENSLACG00000016317	PRPF4	98	65.377	ENSPFOG00000013524	prpf4	99	65.861	Poecilia_formosa
ENSLACG00000016317	PRPF4	62	63.609	ENSPLAG00000011620	prpf4	99	62.236	Poecilia_latipinna
ENSLACG00000016317	PRPF4	95	66.569	ENSPMEG00000006813	prpf4	100	66.569	Poecilia_mexicana
ENSLACG00000016317	PRPF4	98	80.934	ENSPCAG00000002561	PRPF4	99	80.934	Procavia_capensis
ENSLACG00000016317	PRPF4	98	81.250	ENSPCOG00000011975	PRPF4	99	80.539	Propithecus_coquereli
ENSLACG00000016317	PRPF4	98	80.469	ENSPVAG00000004708	PRPF4	98	80.469	Pteropus_vampyrus
ENSLACG00000016317	PRPF4	97	72.266	ENSPNYG00000008013	prpf4	100	72.266	Pundamilia_nyererei
ENSLACG00000016317	PRPF4	97	75.835	ENSPNAG00000000697	prpf4	100	75.835	Pygocentrus_nattereri
ENSLACG00000016317	PRPF4	99	80.732	ENSRNOG00000014777	Prpf4	99	80.732	Rattus_norvegicus
ENSLACG00000016317	PRPF4	99	80.347	ENSRBIG00000040221	PRPF4	99	80.347	Rhinopithecus_bieti
ENSLACG00000016317	PRPF4	99	80.347	ENSRROG00000040240	PRPF4	99	80.347	Rhinopithecus_roxellana
ENSLACG00000016317	PRPF4	98	80.588	ENSSHAG00000017658	PRPF4	97	80.588	Sarcophilus_harrisii
ENSLACG00000016317	PRPF4	97	78.978	ENSSFOG00015008963	prpf4	100	78.978	Scleropages_formosus
ENSLACG00000016317	PRPF4	97	71.680	ENSSMAG00000008889	prpf4	100	71.680	Scophthalmus_maximus
ENSLACG00000016317	PRPF4	97	69.216	ENSSDUG00000022083	prpf4	99	69.412	Seriola_dumerili
ENSLACG00000016317	PRPF4	97	69.412	ENSSLDG00000008115	prpf4	99	69.608	Seriola_lalandi_dorsalis
ENSLACG00000016317	PRPF4	98	80.777	ENSSPUG00000015582	PRPF4	99	80.777	Sphenodon_punctatus
ENSLACG00000016317	PRPF4	97	65.825	ENSSPAG00000011286	prpf4	100	65.825	Stegastes_partitus
ENSLACG00000016317	PRPF4	99	80.347	ENSSSCG00000024648	PRPF4	99	80.347	Sus_scrofa
ENSLACG00000016317	PRPF4	95	79.477	ENSTGUG00000002623	PRPF4	100	79.837	Taeniopygia_guttata
ENSLACG00000016317	PRPF4	97	72.211	ENSTRUG00000008853	prpf4	100	72.211	Takifugu_rubripes
ENSLACG00000016317	PRPF4	97	70.980	ENSTNIG00000013250	prpf4	100	70.980	Tetraodon_nigroviridis
ENSLACG00000016317	PRPF4	98	78.711	ENSTBEG00000000821	PRPF4	98	78.711	Tupaia_belangeri
ENSLACG00000016317	PRPF4	87	89.535	ENSTTRG00000003246	PRPF4	85	89.535	Tursiops_truncatus
ENSLACG00000016317	PRPF4	63	72.892	ENSUAMG00000018288	PRPF4	98	68.120	Ursus_americanus
ENSLACG00000016317	PRPF4	99	79.769	ENSUMAG00000019375	PRPF4	99	79.769	Ursus_maritimus
ENSLACG00000016317	PRPF4	98	80.859	ENSVPAG00000005281	PRPF4	98	80.859	Vicugna_pacos
ENSLACG00000016317	PRPF4	99	79.732	ENSVVUG00000002476	PRPF4	99	81.423	Vulpes_vulpes
ENSLACG00000016317	PRPF4	69	51.524	ENSXCOG00000006101	prpf4	93	52.956	Xiphophorus_couchianus
ENSLACG00000016317	PRPF4	97	59.529	ENSXMAG00000002750	prpf4	100	60.352	Xiphophorus_maculatus