EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000016697 (Gene tree)
Gene ID: 102345306
Gene Symbol: SMARCA1
Alias: ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SWI|hSNF2L
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 66847 bases
Position: chrJH126790.1:1686716-1753562
Accession: 102345306
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000018979	ResIII	PF04851.15	3.3e-11	1	1
ENSLACP00000018980	ResIII	PF04851.15	3.4e-11	1	1
ENSLACP00000018979	DEAD	PF00270.29	1.9e-06	1	1
ENSLACP00000018980	DEAD	PF00270.29	2e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000019112	SMARCA1-201	6194	XM_005994938	ENSLACP00000018979	1017 (aa)	XP_005995000	H3BAQ8
ENSLACT00000019113	SMARCA1-202	3099	-	ENSLACP00000018980	1033 (aa)	-	H3BAQ9

Gene Model

Click here to download ENSLACG00000016697's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000016697's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000016697	SMARCA1	54	41.547	ENSLACG00000006262	CHD1L	53	41.547
ENSLACG00000016697	SMARCA1	97	88.289	ENSLACG00000007091	SMARCA5	97	88.289

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000016697	SMARCA1	98	90.190	ENSG00000102038	SMARCA1	96	89.250	Homo_sapiens
ENSLACG00000016697	SMARCA1	95	85.258	ENSAPOG00000016035	smarca5	98	85.573	Acanthochromis_polyacanthus
ENSLACG00000016697	SMARCA1	98	88.823	ENSAMEG00000015218	SMARCA1	96	87.914	Ailuropoda_melanoleuca
ENSLACG00000016697	SMARCA1	88	85.953	ENSACIG00000016982	smarca5	99	86.067	Amphilophus_citrinellus
ENSLACG00000016697	SMARCA1	95	85.258	ENSAOCG00000015578	smarca5	97	82.475	Amphiprion_ocellaris
ENSLACG00000016697	SMARCA1	95	85.258	ENSAPEG00000011117	smarca5	99	85.511	Amphiprion_percula
ENSLACG00000016697	SMARCA1	95	85.155	ENSATEG00000012894	smarca5	94	85.550	Anabas_testudineus
ENSLACG00000016697	SMARCA1	97	93.788	ENSAPLG00000013149	SMARCA1	100	93.788	Anas_platyrhynchos
ENSLACG00000016697	SMARCA1	99	92.353	ENSACAG00000011376	SMARCA1	97	92.353	Anolis_carolinensis
ENSLACG00000016697	SMARCA1	98	85.085	ENSANAG00000023098	SMARCA1	95	84.539	Aotus_nancymaae
ENSLACG00000016697	SMARCA1	95	85.670	ENSACLG00000025356	smarca5	94	85.670	Astatotilapia_calliptera
ENSLACG00000016697	SMARCA1	91	91.828	ENSAMXG00000011227	smarca1	99	93.576	Astyanax_mexicanus
ENSLACG00000016697	SMARCA1	99	84.048	ENSAMXG00000005709	smarca5	97	83.813	Astyanax_mexicanus
ENSLACG00000016697	SMARCA1	98	89.859	ENSBTAG00000002292	SMARCA1	95	88.224	Bos_taurus
ENSLACG00000016697	SMARCA1	99	62.366	WBGene00002169	isw-1	99	61.840	Caenorhabditis_elegans
ENSLACG00000016697	SMARCA1	98	90.290	ENSCJAG00000002868	SMARCA1	96	89.349	Callithrix_jacchus
ENSLACG00000016697	SMARCA1	98	80.217	ENSCAFG00000018673	SMARCA1	99	81.294	Canis_familiaris
ENSLACG00000016697	SMARCA1	98	90.090	ENSCAFG00020001751	SMARCA1	96	89.152	Canis_lupus_dingo
ENSLACG00000016697	SMARCA1	98	89.890	ENSCHIG00000009837	SMARCA1	96	88.955	Capra_hircus
ENSLACG00000016697	SMARCA1	98	90.500	ENSTSYG00000004240	SMARCA1	98	90.061	Carlito_syrichta
ENSLACG00000016697	SMARCA1	98	89.154	ENSCPOG00000013601	SMARCA1	96	88.571	Cavia_porcellus
ENSLACG00000016697	SMARCA1	98	87.087	ENSCCAG00000030817	SMARCA1	96	86.193	Cebus_capucinus
ENSLACG00000016697	SMARCA1	98	89.120	ENSCATG00000015921	SMARCA1	95	89.697	Cercocebus_atys
ENSLACG00000016697	SMARCA1	98	89.790	ENSCLAG00000002171	SMARCA1	97	88.132	Chinchilla_lanigera
ENSLACG00000016697	SMARCA1	98	90.190	ENSCSAG00000008460	SMARCA1	96	89.250	Chlorocebus_sabaeus
ENSLACG00000016697	SMARCA1	99	94.118	ENSCPBG00000001146	SMARCA1	95	94.118	Chrysemys_picta_bellii
ENSLACG00000016697	SMARCA1	95	74.770	ENSCING00000004110	swi/snf	97	74.770	Ciona_intestinalis
ENSLACG00000016697	SMARCA1	97	74.119	ENSCSAVG00000004620	-	99	76.174	Ciona_savignyi
ENSLACG00000016697	SMARCA1	98	90.290	ENSCANG00000007183	SMARCA1	96	89.349	Colobus_angolensis_palliatus
ENSLACG00000016697	SMARCA1	98	89.157	ENSCGRG00001010776	Smarca1	96	87.968	Cricetulus_griseus_chok1gshd
ENSLACG00000016697	SMARCA1	96	88.235	ENSCGRG00000015301	Smarca1	98	88.235	Cricetulus_griseus_crigri
ENSLACG00000016697	SMARCA1	95	85.155	ENSCSEG00000000328	smarca5	94	85.155	Cynoglossus_semilaevis
ENSLACG00000016697	SMARCA1	95	84.845	ENSCVAG00000008668	smarca5	99	85.172	Cyprinodon_variegatus
ENSLACG00000016697	SMARCA1	99	87.536	ENSDARG00000012776	smarca1	99	87.923	Danio_rerio
ENSLACG00000016697	SMARCA1	98	83.400	ENSDARG00000052348	smarca5	96	83.400	Danio_rerio
ENSLACG00000016697	SMARCA1	96	89.969	ENSDNOG00000004315	SMARCA1	94	89.969	Dasypus_novemcinctus
ENSLACG00000016697	SMARCA1	97	88.574	ENSDORG00000009270	Smarca1	95	88.574	Dipodomys_ordii
ENSLACG00000016697	SMARCA1	96	74.303	FBgn0011604	Iswi	98	74.085	Drosophila_melanogaster
ENSLACG00000016697	SMARCA1	81	87.500	ENSETEG00000017426	SMARCA1	85	87.500	Echinops_telfairi
ENSLACG00000016697	SMARCA1	99	81.503	ENSEBUG00000001239	smarca5	99	81.503	Eptatretus_burgeri
ENSLACG00000016697	SMARCA1	98	85.456	ENSEASG00005008218	SMARCA1	100	86.451	Equus_asinus_asinus
ENSLACG00000016697	SMARCA1	98	89.990	ENSECAG00000012106	SMARCA1	96	89.053	Equus_caballus
ENSLACG00000016697	SMARCA1	79	90.397	ENSEEUG00000014927	SMARCA1	82	90.397	Erinaceus_europaeus
ENSLACG00000016697	SMARCA1	99	88.813	ENSELUG00000010515	smarca1	99	88.901	Esox_lucius
ENSLACG00000016697	SMARCA1	99	89.741	ENSFCAG00000018496	SMARCA1	95	89.741	Felis_catus
ENSLACG00000016697	SMARCA1	90	94.524	ENSFALG00000000209	SMARCA1	98	94.524	Ficedula_albicollis
ENSLACG00000016697	SMARCA1	96	89.102	ENSFDAG00000009818	SMARCA1	97	89.102	Fukomys_damarensis
ENSLACG00000016697	SMARCA1	95	85.258	ENSFHEG00000007687	smarca5	94	84.506	Fundulus_heteroclitus
ENSLACG00000016697	SMARCA1	98	93.480	ENSGALG00000008431	SMARCA1	99	93.480	Gallus_gallus
ENSLACG00000016697	SMARCA1	95	85.464	ENSGAFG00000017731	smarca5	95	84.709	Gambusia_affinis
ENSLACG00000016697	SMARCA1	96	94.342	ENSGAGG00000023575	SMARCA1	100	94.342	Gopherus_agassizii
ENSLACG00000016697	SMARCA1	73	85.593	ENSGGOG00000012841	-	95	85.755	Gorilla_gorilla
ENSLACG00000016697	SMARCA1	98	89.289	ENSHGLG00000003080	SMARCA1	96	88.363	Heterocephalus_glaber_female
ENSLACG00000016697	SMARCA1	98	88.911	ENSHGLG00100001102	SMARCA1	100	88.911	Heterocephalus_glaber_male
ENSLACG00000016697	SMARCA1	95	85.361	ENSHCOG00000005458	smarca5	97	83.068	Hippocampus_comes
ENSLACG00000016697	SMARCA1	99	88.791	ENSIPUG00000016905	Smarca1	99	90.224	Ictalurus_punctatus
ENSLACG00000016697	SMARCA1	97	85.336	ENSIPUG00000005229	SMARCA5	97	85.336	Ictalurus_punctatus
ENSLACG00000016697	SMARCA1	98	89.910	ENSSTOG00000014524	SMARCA1	97	87.957	Ictidomys_tridecemlineatus
ENSLACG00000016697	SMARCA1	99	88.526	ENSJJAG00000002593	Smarca1	96	88.276	Jaculus_jaculus
ENSLACG00000016697	SMARCA1	95	85.258	ENSKMAG00000003777	smarca5	95	84.506	Kryptolebias_marmoratus
ENSLACG00000016697	SMARCA1	91	85.484	ENSLBEG00000013295	SMARCA1	100	86.726	Labrus_bergylta
ENSLACG00000016697	SMARCA1	97	84.232	ENSLBEG00000018112	smarca5	95	84.232	Labrus_bergylta
ENSLACG00000016697	SMARCA1	99	91.460	ENSLOCG00000014591	smarca1	98	91.460	Lepisosteus_oculatus
ENSLACG00000016697	SMARCA1	98	89.861	ENSLAFG00000000896	SMARCA1	100	89.861	Loxodonta_africana
ENSLACG00000016697	SMARCA1	98	90.190	ENSMFAG00000002117	SMARCA1	99	89.257	Macaca_fascicularis
ENSLACG00000016697	SMARCA1	98	89.120	ENSMMUG00000008818	SMARCA1	99	91.377	Macaca_mulatta
ENSLACG00000016697	SMARCA1	98	89.120	ENSMNEG00000041768	SMARCA1	99	89.257	Macaca_nemestrina
ENSLACG00000016697	SMARCA1	98	90.190	ENSMLEG00000043198	SMARCA1	96	89.250	Mandrillus_leucophaeus
ENSLACG00000016697	SMARCA1	95	85.258	ENSMAMG00000014294	smarca5	93	85.258	Mastacembelus_armatus
ENSLACG00000016697	SMARCA1	95	85.670	ENSMZEG00005009369	smarca5	94	85.670	Maylandia_zebra
ENSLACG00000016697	SMARCA1	98	92.892	ENSMGAG00000007042	SMARCA1	99	92.892	Meleagris_gallopavo
ENSLACG00000016697	SMARCA1	96	88.673	ENSMAUG00000008133	Smarca1	95	87.726	Mesocricetus_auratus
ENSLACG00000016697	SMARCA1	99	88.555	ENSMICG00000015768	SMARCA1	98	88.652	Microcebus_murinus
ENSLACG00000016697	SMARCA1	98	88.711	ENSMOCG00000009464	Smarca1	95	87.783	Microtus_ochrogaster
ENSLACG00000016697	SMARCA1	95	83.711	ENSMMOG00000005547	smarca5	98	83.711	Mola_mola
ENSLACG00000016697	SMARCA1	99	92.787	ENSMODG00000013187	-	99	92.000	Monodelphis_domestica
ENSLACG00000016697	SMARCA1	95	84.948	ENSMALG00000002081	smarca5	95	85.266	Monopterus_albus
ENSLACG00000016697	SMARCA1	99	88.404	MGP_CAROLIEiJ_G0033034	Smarca1	95	88.404	Mus_caroli
ENSLACG00000016697	SMARCA1	99	88.404	ENSMUSG00000031099	Smarca1	96	87.882	Mus_musculus
ENSLACG00000016697	SMARCA1	99	88.107	MGP_PahariEiJ_G0031579	Smarca1	96	87.586	Mus_pahari
ENSLACG00000016697	SMARCA1	99	88.404	MGP_SPRETEiJ_G0034192	Smarca1	96	87.882	Mus_spretus
ENSLACG00000016697	SMARCA1	98	88.823	ENSMPUG00000017423	SMARCA1	91	87.914	Mustela_putorius_furo
ENSLACG00000016697	SMARCA1	99	87.157	ENSMLUG00000029614	SMARCA1	96	86.901	Myotis_lucifugus
ENSLACG00000016697	SMARCA1	96	89.694	ENSNGAG00000006492	Smarca1	95	88.732	Nannospalax_galili
ENSLACG00000016697	SMARCA1	95	85.670	ENSNBRG00000004463	smarca5	97	85.670	Neolamprologus_brichardi
ENSLACG00000016697	SMARCA1	98	88.328	ENSNLEG00000015179	SMARCA1	99	88.710	Nomascus_leucogenys
ENSLACG00000016697	SMARCA1	92	84.349	ENSMEUG00000008819	SMARCA1	100	84.349	Notamacropus_eugenii
ENSLACG00000016697	SMARCA1	97	88.400	ENSODEG00000012163	SMARCA1	95	88.400	Octodon_degus
ENSLACG00000016697	SMARCA1	95	85.670	ENSONIG00000009993	smarca5	94	85.670	Oreochromis_niloticus
ENSLACG00000016697	SMARCA1	96	94.239	ENSOANG00000002862	SMARCA1	100	94.239	Ornithorhynchus_anatinus
ENSLACG00000016697	SMARCA1	98	89.790	ENSOCUG00000001047	SMARCA1	96	88.955	Oryctolagus_cuniculus
ENSLACG00000016697	SMARCA1	95	85.773	ENSORLG00000021998	smarca5	97	82.970	Oryzias_latipes
ENSLACG00000016697	SMARCA1	95	85.670	ENSORLG00020017679	smarca5	93	85.670	Oryzias_latipes_hni
ENSLACG00000016697	SMARCA1	95	85.773	ENSORLG00015017210	smarca5	93	85.773	Oryzias_latipes_hsok
ENSLACG00000016697	SMARCA1	95	85.876	ENSOMEG00000000086	smarca5	94	85.876	Oryzias_melastigma
ENSLACG00000016697	SMARCA1	96	89.596	ENSOGAG00000004399	SMARCA1	95	88.657	Otolemur_garnettii
ENSLACG00000016697	SMARCA1	98	88.746	ENSOARG00000014638	SMARCA1	100	90.408	Ovis_aries
ENSLACG00000016697	SMARCA1	98	90.190	ENSPPAG00000034647	SMARCA1	96	89.250	Pan_paniscus
ENSLACG00000016697	SMARCA1	99	89.841	ENSPPRG00000008929	SMARCA1	95	89.841	Panthera_pardus
ENSLACG00000016697	SMARCA1	98	88.102	ENSPTIG00000000915	SMARCA1	98	88.102	Panthera_tigris_altaica
ENSLACG00000016697	SMARCA1	98	90.190	ENSPTRG00000049876	SMARCA1	95	89.697	Pan_troglodytes
ENSLACG00000016697	SMARCA1	98	90.190	ENSPANG00000003871	SMARCA1	96	89.250	Papio_anubis
ENSLACG00000016697	SMARCA1	96	87.832	ENSPKIG00000013411	smarca1	99	87.626	Paramormyrops_kingsleyae
ENSLACG00000016697	SMARCA1	98	92.892	ENSPSIG00000010101	SMARCA1	100	94.239	Pelodiscus_sinensis
ENSLACG00000016697	SMARCA1	96	89.286	ENSPEMG00000017503	Smarca1	95	88.076	Peromyscus_maniculatus_bairdii
ENSLACG00000016697	SMARCA1	99	93.912	ENSPCIG00000015460	SMARCA1	98	93.912	Phascolarctos_cinereus
ENSLACG00000016697	SMARCA1	95	85.361	ENSPFOG00000007649	smarca5	94	85.361	Poecilia_formosa
ENSLACG00000016697	SMARCA1	95	85.361	ENSPLAG00000003363	smarca5	94	85.361	Poecilia_latipinna
ENSLACG00000016697	SMARCA1	95	85.464	ENSPMEG00000019849	smarca5	94	85.464	Poecilia_mexicana
ENSLACG00000016697	SMARCA1	95	85.464	ENSPREG00000023250	smarca5	94	85.464	Poecilia_reticulata
ENSLACG00000016697	SMARCA1	98	87.287	ENSPPYG00000020703	SMARCA1	96	86.391	Pongo_abelii
ENSLACG00000016697	SMARCA1	79	80.897	ENSPCOG00000020722	SMARCA1	94	86.667	Propithecus_coquereli
ENSLACG00000016697	SMARCA1	91	89.345	ENSPVAG00000003805	SMARCA1	89	89.691	Pteropus_vampyrus
ENSLACG00000016697	SMARCA1	58	88.301	ENSPNYG00000012299	smarca5	88	88.301	Pundamilia_nyererei
ENSLACG00000016697	SMARCA1	99	88.845	ENSRNOG00000003762	Smarca1	96	88.055	Rattus_norvegicus
ENSLACG00000016697	SMARCA1	98	90.290	ENSRROG00000034167	SMARCA1	96	89.349	Rhinopithecus_roxellana
ENSLACG00000016697	SMARCA1	98	89.032	ENSSBOG00000020641	SMARCA1	100	90.816	Saimiri_boliviensis_boliviensis
ENSLACG00000016697	SMARCA1	96	86.845	ENSSHAG00000013518	SMARCA1	99	86.845	Sarcophilus_harrisii
ENSLACG00000016697	SMARCA1	95	85.552	ENSSFOG00015016794	smarca5	99	85.492	Scleropages_formosus
ENSLACG00000016697	SMARCA1	99	89.774	ENSSFOG00015009043	smarca1	99	89.774	Scleropages_formosus
ENSLACG00000016697	SMARCA1	95	85.155	ENSSMAG00000004801	smarca5	94	85.155	Scophthalmus_maximus
ENSLACG00000016697	SMARCA1	95	85.052	ENSSDUG00000020690	smarca5	94	85.052	Seriola_dumerili
ENSLACG00000016697	SMARCA1	95	85.052	ENSSLDG00000025190	smarca5	94	85.052	Seriola_lalandi_dorsalis
ENSLACG00000016697	SMARCA1	89	82.084	ENSSARG00000000842	SMARCA1	92	82.084	Sorex_araneus
ENSLACG00000016697	SMARCA1	96	93.769	ENSSPUG00000000590	SMARCA1	96	93.219	Sphenodon_punctatus
ENSLACG00000016697	SMARCA1	96	84.836	ENSSPAG00000002894	smarca5	96	85.683	Stegastes_partitus
ENSLACG00000016697	SMARCA1	96	90.462	ENSSSCG00000012649	SMARCA1	95	91.205	Sus_scrofa
ENSLACG00000016697	SMARCA1	97	93.890	ENSTGUG00000003899	-	100	93.890	Taeniopygia_guttata
ENSLACG00000016697	SMARCA1	96	85.246	ENSTRUG00000014094	smarca5	95	84.913	Takifugu_rubripes
ENSLACG00000016697	SMARCA1	95	84.124	ENSTNIG00000017717	smarca5	94	83.384	Tetraodon_nigroviridis
ENSLACG00000016697	SMARCA1	96	83.249	ENSTBEG00000014973	SMARCA1	99	83.249	Tupaia_belangeri
ENSLACG00000016697	SMARCA1	96	86.091	ENSTTRG00000006168	SMARCA1	99	85.990	Tursiops_truncatus
ENSLACG00000016697	SMARCA1	98	89.590	ENSUAMG00000020201	SMARCA1	95	89.908	Ursus_americanus
ENSLACG00000016697	SMARCA1	99	84.418	ENSUMAG00000004073	SMARCA1	98	89.952	Ursus_maritimus
ENSLACG00000016697	SMARCA1	75	91.304	ENSVPAG00000010492	-	79	91.304	Vicugna_pacos
ENSLACG00000016697	SMARCA1	98	90.100	ENSVVUG00000008878	SMARCA1	99	91.213	Vulpes_vulpes
ENSLACG00000016697	SMARCA1	98	91.775	ENSXETG00000001526	smarca1	100	91.775	Xenopus_tropicalis
ENSLACG00000016697	SMARCA1	95	85.361	ENSXCOG00000011170	smarca5	97	84.608	Xiphophorus_couchianus
ENSLACG00000016697	SMARCA1	95	85.361	ENSXMAG00000009678	smarca5	98	85.932	Xiphophorus_maculatus