EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000017188 (Gene tree)
Gene ID: 102355467
Gene Symbol: PUM1
Alias: KIAA0099|PUMH1
Full Name: pumilio RNA binding family member 1
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 70019 bases
Position: chrJH126714.1:1953052-2023070
Accession: 102355467
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000019545	PUF	PF00806.19	6e-57	1	6
ENSLACP00000019545	PUF	PF00806.19	6e-57	2	6
ENSLACP00000019545	PUF	PF00806.19	6e-57	3	6
ENSLACP00000019545	PUF	PF00806.19	6e-57	4	6
ENSLACP00000019545	PUF	PF00806.19	6e-57	5	6
ENSLACP00000019545	PUF	PF00806.19	6e-57	6	6

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000019683	PUM1-201	7355	XM_005993147	ENSLACP00000019545	1192 (aa)	-	H3BCC4

Gene Model

Click here to download ENSLACG00000017188's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000017188's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000017188	PUM1	95	74.655	ENSLACG00000008723	PUM2	93	75.950

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000017188	PUM1	99	86.761	ENSG00000134644	PUM1	100	88.724	Homo_sapiens
ENSLACG00000017188	PUM1	99	72.848	ENSAPOG00000021632	pum1	100	75.514	Acanthochromis_polyacanthus
ENSLACG00000017188	PUM1	100	86.733	ENSAMEG00000017656	PUM1	97	86.567	Ailuropoda_melanoleuca
ENSLACG00000017188	PUM1	99	72.531	ENSACIG00000021013	pum1	100	75.537	Amphilophus_citrinellus
ENSLACG00000017188	PUM1	99	72.848	ENSAOCG00000003944	pum1	100	75.514	Amphiprion_ocellaris
ENSLACG00000017188	PUM1	99	72.848	ENSAPEG00000014550	pum1	100	75.514	Amphiprion_percula
ENSLACG00000017188	PUM1	99	73.096	ENSATEG00000016004	pum1	100	83.971	Anabas_testudineus
ENSLACG00000017188	PUM1	99	87.843	ENSAPLG00000009351	PUM1	100	87.677	Anas_platyrhynchos
ENSLACG00000017188	PUM1	99	86.545	ENSACAG00000000682	PUM1	98	86.213	Anolis_carolinensis
ENSLACG00000017188	PUM1	99	86.428	ENSANAG00000027865	PUM1	100	88.600	Aotus_nancymaae
ENSLACG00000017188	PUM1	89	74.769	ENSACLG00000019354	pum1	100	77.952	Astatotilapia_calliptera
ENSLACG00000017188	PUM1	100	76.872	ENSAMXG00000020607	pum1	97	77.121	Astyanax_mexicanus
ENSLACG00000017188	PUM1	99	86.511	ENSBTAG00000018979	PUM1	100	88.848	Bos_taurus
ENSLACG00000017188	PUM1	99	86.761	ENSCJAG00000006035	PUM1	100	88.848	Callithrix_jacchus
ENSLACG00000017188	PUM1	99	85.012	ENSCAFG00000011205	PUM1	100	84.846	Canis_familiaris
ENSLACG00000017188	PUM1	90	87.362	ENSCAFG00020024616	PUM1	98	88.848	Canis_lupus_dingo
ENSLACG00000017188	PUM1	99	86.511	ENSCHIG00000012952	PUM1	100	87.530	Capra_hircus
ENSLACG00000017188	PUM1	99	86.428	ENSTSYG00000008868	PUM1	100	88.476	Carlito_syrichta
ENSLACG00000017188	PUM1	99	86.511	ENSCPOG00000031613	PUM1	100	88.352	Cavia_porcellus
ENSLACG00000017188	PUM1	99	84.846	ENSCATG00000017991	PUM1	100	88.724	Cercocebus_atys
ENSLACG00000017188	PUM1	99	86.428	ENSCLAG00000007662	PUM1	100	88.352	Chinchilla_lanigera
ENSLACG00000017188	PUM1	99	85.396	ENSCSAG00000001028	PUM1	100	85.479	Chlorocebus_sabaeus
ENSLACG00000017188	PUM1	93	82.627	ENSCHOG00000010245	PUM1	93	82.345	Choloepus_hoffmanni
ENSLACG00000017188	PUM1	99	87.231	ENSCPBG00000009288	PUM1	100	89.343	Chrysemys_picta_bellii
ENSLACG00000017188	PUM1	99	86.711	ENSCANG00000042606	PUM1	100	88.724	Colobus_angolensis_palliatus
ENSLACG00000017188	PUM1	99	86.012	ENSCGRG00001024949	Pum1	100	88.104	Cricetulus_griseus_chok1gshd
ENSLACG00000017188	PUM1	99	86.012	ENSCGRG00000014197	Pum1	100	88.104	Cricetulus_griseus_crigri
ENSLACG00000017188	PUM1	89	73.752	ENSCSEG00000015981	pum1	100	76.753	Cynoglossus_semilaevis
ENSLACG00000017188	PUM1	99	72.599	ENSCVAG00000007043	pum1	100	74.938	Cyprinodon_variegatus
ENSLACG00000017188	PUM1	99	76.461	ENSDARG00000099256	pum1	100	76.628	Danio_rerio
ENSLACG00000017188	PUM1	99	86.345	ENSDNOG00000010939	PUM1	100	86.178	Dasypus_novemcinctus
ENSLACG00000017188	PUM1	85	87.050	ENSDORG00000001875	Pum1	100	87.050	Dipodomys_ordii
ENSLACG00000017188	PUM1	88	82.267	ENSETEG00000004355	PUM1	87	82.267	Echinops_telfairi
ENSLACG00000017188	PUM1	99	86.595	ENSEASG00005010813	PUM1	100	86.428	Equus_asinus_asinus
ENSLACG00000017188	PUM1	99	86.595	ENSECAG00000021369	PUM1	100	86.428	Equus_caballus
ENSLACG00000017188	PUM1	76	90.798	ENSEEUG00000003871	PUM1	75	90.798	Erinaceus_europaeus
ENSLACG00000017188	PUM1	99	73.645	ENSELUG00000002409	pum1	100	80.074	Esox_lucius
ENSLACG00000017188	PUM1	99	86.844	ENSFCAG00000010374	PUM1	100	89.082	Felis_catus
ENSLACG00000017188	PUM1	99	87.428	ENSFALG00000001214	PUM1	97	87.345	Ficedula_albicollis
ENSLACG00000017188	PUM1	99	86.428	ENSFDAG00000011319	PUM1	100	88.352	Fukomys_damarensis
ENSLACG00000017188	PUM1	99	88.010	ENSGALG00000042598	PUM1	100	88.877	Gallus_gallus
ENSLACG00000017188	PUM1	99	72.185	ENSGAFG00000015617	pum1	100	83.014	Gambusia_affinis
ENSLACG00000017188	PUM1	99	73.045	ENSGACG00000005717	pum1	100	75.557	Gasterosteus_aculeatus
ENSLACG00000017188	PUM1	99	87.094	ENSGAGG00000001290	PUM1	99	89.537	Gopherus_agassizii
ENSLACG00000017188	PUM1	99	86.711	ENSGGOG00000011983	PUM1	100	88.724	Gorilla_gorilla
ENSLACG00000017188	PUM1	99	73.179	ENSHBUG00000018718	pum1	100	75.349	Haplochromis_burtoni
ENSLACG00000017188	PUM1	99	86.261	ENSHGLG00000013819	Pum1	100	88.104	Heterocephalus_glaber_female
ENSLACG00000017188	PUM1	99	86.261	ENSHGLG00100008621	Pum1	100	88.104	Heterocephalus_glaber_male
ENSLACG00000017188	PUM1	89	71.719	ENSHCOG00000005149	pum1	100	73.869	Hippocampus_comes
ENSLACG00000017188	PUM1	99	75.498	ENSIPUG00000020421	pum1	100	76.886	Ictalurus_punctatus
ENSLACG00000017188	PUM1	99	86.595	ENSSTOG00000010757	PUM1	100	88.600	Ictidomys_tridecemlineatus
ENSLACG00000017188	PUM1	99	86.428	ENSJJAG00000000530	Pum1	100	88.352	Jaculus_jaculus
ENSLACG00000017188	PUM1	99	72.780	ENSKMAG00000003481	pum1	100	75.725	Kryptolebias_marmoratus
ENSLACG00000017188	PUM1	99	72.554	ENSLBEG00000002527	pum1	100	75.309	Labrus_bergylta
ENSLACG00000017188	PUM1	99	85.928	ENSLOCG00000005210	pum1	100	85.571	Lepisosteus_oculatus
ENSLACG00000017188	PUM1	99	86.345	ENSLAFG00000003178	PUM1	100	86.178	Loxodonta_africana
ENSLACG00000017188	PUM1	99	86.656	ENSMFAG00000010291	PUM1	100	88.724	Macaca_fascicularis
ENSLACG00000017188	PUM1	99	86.473	ENSMMUG00000013520	PUM1	100	88.724	Macaca_mulatta
ENSLACG00000017188	PUM1	99	86.678	ENSMNEG00000034639	PUM1	100	88.724	Macaca_nemestrina
ENSLACG00000017188	PUM1	99	86.678	ENSMLEG00000038743	PUM1	100	88.724	Mandrillus_leucophaeus
ENSLACG00000017188	PUM1	99	72.848	ENSMAMG00000011606	pum1	100	75.267	Mastacembelus_armatus
ENSLACG00000017188	PUM1	99	73.179	ENSMZEG00005005834	pum1	100	75.349	Maylandia_zebra
ENSLACG00000017188	PUM1	100	87.065	ENSMGAG00000000724	PUM1	100	88.877	Meleagris_gallopavo
ENSLACG00000017188	PUM1	99	86.095	ENSMAUG00000022090	Pum1	100	87.732	Mesocricetus_auratus
ENSLACG00000017188	PUM1	100	85.738	ENSMICG00000012213	-	100	88.078	Microcebus_murinus
ENSLACG00000017188	PUM1	99	86.678	ENSMICG00000007713	-	100	88.724	Microcebus_murinus
ENSLACG00000017188	PUM1	99	86.178	ENSMOCG00000015463	Pum1	100	88.228	Microtus_ochrogaster
ENSLACG00000017188	PUM1	81	81.667	ENSMMOG00000019817	pum1	100	83.732	Mola_mola
ENSLACG00000017188	PUM1	99	86.556	ENSMODG00000017067	PUM1	100	86.522	Monodelphis_domestica
ENSLACG00000017188	PUM1	86	79.909	ENSMALG00000016399	pum1	100	83.971	Monopterus_albus
ENSLACG00000017188	PUM1	99	86.261	MGP_CAROLIEiJ_G0026549	Pum1	100	88.228	Mus_caroli
ENSLACG00000017188	PUM1	99	86.261	ENSMUSG00000028580	Pum1	100	88.104	Mus_musculus
ENSLACG00000017188	PUM1	99	86.178	MGP_PahariEiJ_G0028881	Pum1	100	88.104	Mus_pahari
ENSLACG00000017188	PUM1	99	86.261	MGP_SPRETEiJ_G0027529	Pum1	100	88.104	Mus_spretus
ENSLACG00000017188	PUM1	99	86.678	ENSMPUG00000015454	PUM1	100	86.511	Mustela_putorius_furo
ENSLACG00000017188	PUM1	99	86.345	ENSMLUG00000006490	PUM1	100	86.178	Myotis_lucifugus
ENSLACG00000017188	PUM1	99	86.595	ENSNGAG00000002378	Pum1	100	88.724	Nannospalax_galili
ENSLACG00000017188	PUM1	79	77.833	ENSNBRG00000010689	pum1	100	81.327	Neolamprologus_brichardi
ENSLACG00000017188	PUM1	99	86.700	ENSNLEG00000001151	PUM1	100	88.710	Nomascus_leucogenys
ENSLACG00000017188	PUM1	75	90.909	ENSMEUG00000000976	-	73	90.909	Notamacropus_eugenii
ENSLACG00000017188	PUM1	83	96.262	ENSOPRG00000001776	PUM1	75	96.262	Ochotona_princeps
ENSLACG00000017188	PUM1	99	86.261	ENSODEG00000003465	PUM1	100	88.228	Octodon_degus
ENSLACG00000017188	PUM1	100	72.831	ENSONIG00000002290	pum1	100	75.431	Oreochromis_niloticus
ENSLACG00000017188	PUM1	81	72.245	ENSOANG00000004902	-	100	71.224	Ornithorhynchus_anatinus
ENSLACG00000017188	PUM1	99	86.345	ENSOCUG00000008641	PUM1	99	86.178	Oryctolagus_cuniculus
ENSLACG00000017188	PUM1	99	73.515	ENSORLG00000011482	pum1	100	75.266	Oryzias_latipes
ENSLACG00000017188	PUM1	99	73.597	ENSORLG00020019461	pum1	100	75.266	Oryzias_latipes_hni
ENSLACG00000017188	PUM1	99	73.597	ENSORLG00015011375	pum1	100	75.348	Oryzias_latipes_hsok
ENSLACG00000017188	PUM1	89	83.971	ENSOMEG00000009312	pum1	100	71.977	Oryzias_melastigma
ENSLACG00000017188	PUM1	99	83.791	ENSOGAG00000011063	PUM1	100	83.624	Otolemur_garnettii
ENSLACG00000017188	PUM1	99	86.012	ENSOARG00000001899	PUM1	100	87.530	Ovis_aries
ENSLACG00000017188	PUM1	99	86.711	ENSPPAG00000044003	PUM1	100	88.724	Pan_paniscus
ENSLACG00000017188	PUM1	99	86.761	ENSPPRG00000001370	PUM1	100	88.848	Panthera_pardus
ENSLACG00000017188	PUM1	99	86.595	ENSPTIG00000010798	PUM1	100	88.600	Panthera_tigris_altaica
ENSLACG00000017188	PUM1	99	86.711	ENSPTRG00000000453	PUM1	100	88.724	Pan_troglodytes
ENSLACG00000017188	PUM1	99	86.678	ENSPANG00000016338	PUM1	100	88.724	Papio_anubis
ENSLACG00000017188	PUM1	99	76.612	ENSPKIG00000010578	pum1	100	76.116	Paramormyrops_kingsleyae
ENSLACG00000017188	PUM1	99	87.510	ENSPSIG00000014118	PUM1	100	87.427	Pelodiscus_sinensis
ENSLACG00000017188	PUM1	79	75.976	ENSPMGG00000005836	pum1	100	79.684	Periophthalmus_magnuspinnatus
ENSLACG00000017188	PUM1	99	86.095	ENSPEMG00000010009	Pum1	100	87.732	Peromyscus_maniculatus_bairdii
ENSLACG00000017188	PUM1	99	86.639	ENSPCIG00000014151	PUM1	100	89.467	Phascolarctos_cinereus
ENSLACG00000017188	PUM1	94	75.154	ENSPFOG00000007289	pum1	99	79.300	Poecilia_formosa
ENSLACG00000017188	PUM1	99	71.279	ENSPLAG00000007256	pum1	100	76.452	Poecilia_latipinna
ENSLACG00000017188	PUM1	90	74.816	ENSPMEG00000019543	pum1	99	76.930	Poecilia_mexicana
ENSLACG00000017188	PUM1	99	73.013	ENSPREG00000005195	pum1	100	78.890	Poecilia_reticulata
ENSLACG00000017188	PUM1	99	84.980	ENSPPYG00000001621	PUM1	100	84.816	Pongo_abelii
ENSLACG00000017188	PUM1	75	86.652	ENSPCAG00000001979	PUM1	74	86.652	Procavia_capensis
ENSLACG00000017188	PUM1	99	86.678	ENSPCOG00000004398	PUM1	100	88.724	Propithecus_coquereli
ENSLACG00000017188	PUM1	99	84.801	ENSPVAG00000005207	PUM1	97	84.635	Pteropus_vampyrus
ENSLACG00000017188	PUM1	99	73.262	ENSPNYG00000009518	pum1	100	75.431	Pundamilia_nyererei
ENSLACG00000017188	PUM1	99	76.795	ENSPNAG00000026728	pum1	100	77.325	Pygocentrus_nattereri
ENSLACG00000017188	PUM1	99	86.095	ENSRNOG00000011709	Pum1	100	85.928	Rattus_norvegicus
ENSLACG00000017188	PUM1	99	86.711	ENSRBIG00000042521	PUM1	100	88.724	Rhinopithecus_bieti
ENSLACG00000017188	PUM1	100	86.722	ENSRROG00000020156	PUM1	100	88.724	Rhinopithecus_roxellana
ENSLACG00000017188	PUM1	99	86.678	ENSSBOG00000032037	PUM1	100	88.724	Saimiri_boliviensis_boliviensis
ENSLACG00000017188	PUM1	99	86.473	ENSSHAG00000010918	PUM1	100	86.522	Sarcophilus_harrisii
ENSLACG00000017188	PUM1	99	73.510	ENSSMAG00000010918	pum1	100	75.848	Scophthalmus_maximus
ENSLACG00000017188	PUM1	99	73.262	ENSSDUG00000009021	pum1	100	75.842	Seriola_dumerili
ENSLACG00000017188	PUM1	93	73.597	ENSSLDG00000009667	pum1	100	77.593	Seriola_lalandi_dorsalis
ENSLACG00000017188	PUM1	93	87.500	ENSSARG00000003055	PUM1	92	87.500	Sorex_araneus
ENSLACG00000017188	PUM1	99	87.760	ENSSPUG00000006267	PUM1	100	87.677	Sphenodon_punctatus
ENSLACG00000017188	PUM1	99	72.848	ENSSPAG00000016636	pum1	100	75.514	Stegastes_partitus
ENSLACG00000017188	PUM1	99	88.129	ENSSSCG00000003591	PUM1	100	89.206	Sus_scrofa
ENSLACG00000017188	PUM1	99	73.112	ENSTRUG00000013121	pum1	100	81.450	Takifugu_rubripes
ENSLACG00000017188	PUM1	100	73.140	ENSTNIG00000016983	pum1	99	76.155	Tetraodon_nigroviridis
ENSLACG00000017188	PUM1	87	93.902	ENSTBEG00000013810	PUM1	89	93.902	Tupaia_belangeri
ENSLACG00000017188	PUM1	91	87.671	ENSTTRG00000007436	PUM1	89	87.705	Tursiops_truncatus
ENSLACG00000017188	PUM1	98	85.324	ENSUAMG00000018262	-	100	85.141	Ursus_americanus
ENSLACG00000017188	PUM1	95	88.010	ENSUMAG00000009211	PUM1	100	88.010	Ursus_maritimus
ENSLACG00000017188	PUM1	92	89.343	ENSVPAG00000005902	PUM1	92	89.343	Vicugna_pacos
ENSLACG00000017188	PUM1	99	86.844	ENSVVUG00000014631	PUM1	100	88.010	Vulpes_vulpes
ENSLACG00000017188	PUM1	100	81.675	ENSXETG00000012904	pum1	100	81.675	Xenopus_tropicalis
ENSLACG00000017188	PUM1	99	71.937	ENSXMAG00000002945	pum1	100	76.556	Xiphophorus_maculatus