EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000017560 (Gene tree)
Gene ID: 102355021
Gene Symbol: PRDM12
Alias: PFM9
Full Name: PR/SET domain 12
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Minus strand
Length: 18788 bases
Position: chrJH126677.1:2194121-2212908
Accession: 102355021
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000019977	zf-C2H2	PF00096.26	2.8e-12	1	2
ENSLACP00000019977	zf-C2H2	PF00096.26	2.8e-12	2	2
ENSLACP00000019977	zf-met	PF12874.7	6.3e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000020115	PRDM12-201	1065	XM_005992122	ENSLACP00000019977	354 (aa)	XP_005992184	H3BDK6

Gene Model

Click here to download ENSLACG00000017560's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000017560's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000017560	PRDM12	54	40.789	ENSLACG00000009187	PRDM5	92	40.789

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000017560	PRDM12	94	90.090	ENSG00000130711	PRDM12	99	85.792	Homo_sapiens
ENSLACG00000017560	PRDM12	99	77.344	ENSAPOG00000016051	prdm12b	100	78.385	Acanthochromis_polyacanthus
ENSLACG00000017560	PRDM12	99	66.757	ENSAPOG00000018234	-	100	66.757	Acanthochromis_polyacanthus
ENSLACG00000017560	PRDM12	91	88.545	ENSAMEG00000016234	PRDM12	99	88.854	Ailuropoda_melanoleuca
ENSLACG00000017560	PRDM12	99	78.723	ENSACIG00000019578	prdm12b	100	79.255	Amphilophus_citrinellus
ENSLACG00000017560	PRDM12	99	78.628	ENSACIG00000005193	-	100	78.100	Amphilophus_citrinellus
ENSLACG00000017560	PRDM12	99	77.309	ENSAOCG00000015040	prdm12b	100	78.364	Amphiprion_ocellaris
ENSLACG00000017560	PRDM12	99	73.037	ENSAPEG00000022849	-	99	73.560	Amphiprion_percula
ENSLACG00000017560	PRDM12	99	77.926	ENSAPEG00000015092	prdm12b	100	78.989	Amphiprion_percula
ENSLACG00000017560	PRDM12	95	83.333	ENSATEG00000014595	-	99	83.626	Anabas_testudineus
ENSLACG00000017560	PRDM12	96	89.971	ENSANAG00000020616	PRDM12	99	89.971	Aotus_nancymaae
ENSLACG00000017560	PRDM12	99	75.127	ENSACLG00000007631	-	100	76.142	Astatotilapia_calliptera
ENSLACG00000017560	PRDM12	99	79.614	ENSACLG00000011876	prdm12b	100	79.614	Astatotilapia_calliptera
ENSLACG00000017560	PRDM12	99	84.324	ENSAMXG00000033665	prdm12b	100	85.405	Astyanax_mexicanus
ENSLACG00000017560	PRDM12	99	82.500	ENSAMXG00000008540	PRDM12	100	82.500	Astyanax_mexicanus
ENSLACG00000017560	PRDM12	94	90.390	ENSBTAG00000023797	PRDM12	99	87.500	Bos_taurus
ENSLACG00000017560	PRDM12	94	90.090	ENSCJAG00000020540	PRDM12	99	87.465	Callithrix_jacchus
ENSLACG00000017560	PRDM12	82	90.034	ENSCAFG00000023076	PRDM12	99	85.981	Canis_familiaris
ENSLACG00000017560	PRDM12	94	90.390	ENSCAFG00020024046	PRDM12	99	86.777	Canis_lupus_dingo
ENSLACG00000017560	PRDM12	94	90.390	ENSCHIG00000025005	PRDM12	99	87.258	Capra_hircus
ENSLACG00000017560	PRDM12	95	85.672	ENSCPOG00000005901	PRDM12	99	85.672	Cavia_porcellus
ENSLACG00000017560	PRDM12	94	90.090	ENSCCAG00000037485	PRDM12	99	86.740	Cebus_capucinus
ENSLACG00000017560	PRDM12	94	90.090	ENSCATG00000020327	PRDM12	99	86.740	Cercocebus_atys
ENSLACG00000017560	PRDM12	94	90.090	ENSCLAG00000005499	PRDM12	91	90.090	Chinchilla_lanigera
ENSLACG00000017560	PRDM12	94	90.090	ENSCSAG00000014756	PRDM12	99	86.501	Chlorocebus_sabaeus
ENSLACG00000017560	PRDM12	99	92.918	ENSCPBG00000022628	PRDM12	99	92.918	Chrysemys_picta_bellii
ENSLACG00000017560	PRDM12	94	90.090	ENSCGRG00001015005	Prdm12	99	86.027	Cricetulus_griseus_chok1gshd
ENSLACG00000017560	PRDM12	99	75.641	ENSCVAG00000000944	-	100	76.410	Cyprinodon_variegatus
ENSLACG00000017560	PRDM12	99	79.245	ENSCVAG00000017166	prdm12b	100	80.593	Cyprinodon_variegatus
ENSLACG00000017560	PRDM12	99	86.066	ENSDARG00000007430	prdm12b	100	86.066	Danio_rerio
ENSLACG00000017560	PRDM12	94	89.820	ENSDNOG00000042302	PRDM12	99	86.981	Dasypus_novemcinctus
ENSLACG00000017560	PRDM12	90	63.584	ENSEBUG00000016780	prdm12b	77	65.029	Eptatretus_burgeri
ENSLACG00000017560	PRDM12	96	90.560	ENSEASG00005008472	PRDM12	99	87.535	Equus_asinus_asinus
ENSLACG00000017560	PRDM12	96	90.560	ENSECAG00000005933	PRDM12	99	87.535	Equus_caballus
ENSLACG00000017560	PRDM12	100	80.332	ENSELUG00000013674	PRDM12	99	80.332	Esox_lucius
ENSLACG00000017560	PRDM12	99	83.288	ENSELUG00000009905	prdm12b	100	83.288	Esox_lucius
ENSLACG00000017560	PRDM12	94	90.390	ENSFCAG00000043086	PRDM12	99	87.017	Felis_catus
ENSLACG00000017560	PRDM12	99	92.351	ENSFALG00000001445	PRDM12	89	92.351	Ficedula_albicollis
ENSLACG00000017560	PRDM12	99	77.519	ENSFHEG00000007746	-	100	77.003	Fundulus_heteroclitus
ENSLACG00000017560	PRDM12	99	78.342	ENSFHEG00000003944	prdm12b	100	79.947	Fundulus_heteroclitus
ENSLACG00000017560	PRDM12	100	81.972	ENSGMOG00000011797	prdm12b	100	81.972	Gadus_morhua
ENSLACG00000017560	PRDM12	99	92.351	ENSGALG00000003895	PRDM12	99	92.351	Gallus_gallus
ENSLACG00000017560	PRDM12	99	77.660	ENSGAFG00000010827	prdm12b	99	78.989	Gambusia_affinis
ENSLACG00000017560	PRDM12	99	78.976	ENSGACG00000016713	prdm12b	99	78.976	Gasterosteus_aculeatus
ENSLACG00000017560	PRDM12	99	92.918	ENSGAGG00000014083	PRDM12	99	92.918	Gopherus_agassizii
ENSLACG00000017560	PRDM12	94	89.790	ENSGGOG00000010568	PRDM12	99	85.753	Gorilla_gorilla
ENSLACG00000017560	PRDM12	100	74.937	ENSHBUG00000022537	-	93	75.949	Haplochromis_burtoni
ENSLACG00000017560	PRDM12	99	78.877	ENSHBUG00000022878	prdm12b	100	78.877	Haplochromis_burtoni
ENSLACG00000017560	PRDM12	94	89.189	ENSHGLG00000013939	PRDM12	99	85.165	Heterocephalus_glaber_female
ENSLACG00000017560	PRDM12	92	80.409	ENSHCOG00000003663	prdm12b	100	74.235	Hippocampus_comes
ENSLACG00000017560	PRDM12	99	75.482	ENSHCOG00000021167	-	100	75.482	Hippocampus_comes
ENSLACG00000017560	PRDM12	99	79.121	ENSIPUG00000019544	PRDM12	100	79.121	Ictalurus_punctatus
ENSLACG00000017560	PRDM12	99	85.326	ENSIPUG00000017053	prdm12b	100	85.598	Ictalurus_punctatus
ENSLACG00000017560	PRDM12	95	90.208	ENSSTOG00000005986	PRDM12	88	90.208	Ictidomys_tridecemlineatus
ENSLACG00000017560	PRDM12	93	90.274	ENSJJAG00000005424	Prdm12	99	90.274	Jaculus_jaculus
ENSLACG00000017560	PRDM12	99	73.267	ENSKMAG00000016921	prdm12b	100	74.010	Kryptolebias_marmoratus
ENSLACG00000017560	PRDM12	99	80.112	ENSKMAG00000021205	-	93	83.136	Kryptolebias_marmoratus
ENSLACG00000017560	PRDM12	99	78.421	ENSLBEG00000007776	-	100	78.421	Labrus_bergylta
ENSLACG00000017560	PRDM12	99	77.778	ENSLBEG00000017769	prdm12b	100	78.571	Labrus_bergylta
ENSLACG00000017560	PRDM12	100	87.912	ENSLOCG00000005429	prdm12b	100	88.736	Lepisosteus_oculatus
ENSLACG00000017560	PRDM12	94	88.791	ENSLAFG00000006979	PRDM12	93	88.728	Loxodonta_africana
ENSLACG00000017560	PRDM12	99	83.880	ENSMFAG00000040322	PRDM12	99	86.066	Macaca_fascicularis
ENSLACG00000017560	PRDM12	94	90.090	ENSMNEG00000037234	PRDM12	99	86.740	Macaca_nemestrina
ENSLACG00000017560	PRDM12	99	79.733	ENSMAMG00000013212	prdm12b	100	80.000	Mastacembelus_armatus
ENSLACG00000017560	PRDM12	99	75.703	ENSMAMG00000018988	-	100	77.062	Mastacembelus_armatus
ENSLACG00000017560	PRDM12	99	74.747	ENSMZEG00005000415	PRDM12	100	75.758	Maylandia_zebra
ENSLACG00000017560	PRDM12	98	92.219	ENSMGAG00000005438	PRDM12	98	92.219	Meleagris_gallopavo
ENSLACG00000017560	PRDM12	99	86.264	ENSMAUG00000013040	Prdm12	99	86.264	Mesocricetus_auratus
ENSLACG00000017560	PRDM12	96	90.000	ENSMICG00000015480	PRDM12	99	86.981	Microcebus_murinus
ENSLACG00000017560	PRDM12	99	88.286	ENSMOCG00000021026	Prdm12	93	90.294	Microtus_ochrogaster
ENSLACG00000017560	PRDM12	99	92.373	ENSMODG00000012108	PRDM12	99	92.373	Monodelphis_domestica
ENSLACG00000017560	PRDM12	100	66.667	ENSMALG00000021901	prdm12b	100	66.667	Monopterus_albus
ENSLACG00000017560	PRDM12	94	90.090	MGP_CAROLIEiJ_G0023414	Prdm12	99	86.264	Mus_caroli
ENSLACG00000017560	PRDM12	94	90.090	ENSMUSG00000079466	Prdm12	99	86.264	Mus_musculus
ENSLACG00000017560	PRDM12	94	90.090	MGP_PahariEiJ_G0024871	Prdm12	99	86.264	Mus_pahari
ENSLACG00000017560	PRDM12	94	90.090	MGP_SPRETEiJ_G0024331	Prdm12	99	86.264	Mus_spretus
ENSLACG00000017560	PRDM12	92	90.491	ENSNGAG00000018480	Prdm12	99	86.969	Nannospalax_galili
ENSLACG00000017560	PRDM12	99	78.249	ENSNBRG00000006727	prdm12b	100	78.249	Neolamprologus_brichardi
ENSLACG00000017560	PRDM12	99	75.824	ENSNBRG00000024312	-	100	75.824	Neolamprologus_brichardi
ENSLACG00000017560	PRDM12	99	83.333	ENSMEUG00000003828	PRDM12	99	83.333	Notamacropus_eugenii
ENSLACG00000017560	PRDM12	93	89.362	ENSOPRG00000008680	PRDM12	99	89.362	Ochotona_princeps
ENSLACG00000017560	PRDM12	96	89.706	ENSODEG00000016282	PRDM12	64	89.706	Octodon_degus
ENSLACG00000017560	PRDM12	61	90.783	ENSOANG00000001043	PRDM12	100	90.783	Ornithorhynchus_anatinus
ENSLACG00000017560	PRDM12	88	86.901	ENSOCUG00000008241	PRDM12	100	86.901	Oryctolagus_cuniculus
ENSLACG00000017560	PRDM12	99	76.984	ENSORLG00000007114	prdm12b	99	77.513	Oryzias_latipes
ENSLACG00000017560	PRDM12	99	75.385	ENSORLG00000017558	-	100	76.154	Oryzias_latipes
ENSLACG00000017560	PRDM12	99	75.192	ENSORLG00020013167	-	100	75.959	Oryzias_latipes_hni
ENSLACG00000017560	PRDM12	99	75.789	ENSORLG00020019565	prdm12b	99	77.105	Oryzias_latipes_hni
ENSLACG00000017560	PRDM12	99	75.385	ENSORLG00015003435	-	100	76.154	Oryzias_latipes_hsok
ENSLACG00000017560	PRDM12	99	76.190	ENSORLG00015007621	prdm12b	99	77.513	Oryzias_latipes_hsok
ENSLACG00000017560	PRDM12	99	75.654	ENSOMEG00000004134	prdm12b	99	76.440	Oryzias_melastigma
ENSLACG00000017560	PRDM12	99	78.723	ENSOMEG00000007762	-	100	78.723	Oryzias_melastigma
ENSLACG00000017560	PRDM12	94	90.361	ENSOGAG00000007557	PRDM12	99	90.361	Otolemur_garnettii
ENSLACG00000017560	PRDM12	82	87.671	ENSPPAG00000031506	-	99	87.671	Pan_paniscus
ENSLACG00000017560	PRDM12	99	80.726	ENSPPRG00000023024	PRDM12	92	80.726	Panthera_pardus
ENSLACG00000017560	PRDM12	94	90.090	ENSPTRG00000043324	-	99	86.027	Pan_troglodytes
ENSLACG00000017560	PRDM12	94	90.090	ENSPTRG00000021475	PRDM12	99	86.027	Pan_troglodytes
ENSLACG00000017560	PRDM12	94	90.090	ENSPANG00000025967	PRDM12	99	86.740	Papio_anubis
ENSLACG00000017560	PRDM12	96	80.000	ENSPKIG00000004305	PRDM12	99	80.000	Paramormyrops_kingsleyae
ENSLACG00000017560	PRDM12	99	85.753	ENSPKIG00000007228	prdm12b	100	86.290	Paramormyrops_kingsleyae
ENSLACG00000017560	PRDM12	99	91.501	ENSPSIG00000006739	PRDM12	99	91.501	Pelodiscus_sinensis
ENSLACG00000017560	PRDM12	99	78.474	ENSPMGG00000008867	prdm12b	99	79.837	Periophthalmus_magnuspinnatus
ENSLACG00000017560	PRDM12	99	76.042	ENSPMGG00000002356	-	100	75.781	Periophthalmus_magnuspinnatus
ENSLACG00000017560	PRDM12	97	86.895	ENSPEMG00000009969	Prdm12	96	86.895	Peromyscus_maniculatus_bairdii
ENSLACG00000017560	PRDM12	99	92.373	ENSPCIG00000024119	PRDM12	99	92.373	Phascolarctos_cinereus
ENSLACG00000017560	PRDM12	99	81.030	ENSPFOG00000019841	prdm12b	100	81.030	Poecilia_formosa
ENSLACG00000017560	PRDM12	99	77.573	ENSPLAG00000016626	prdm12b	99	78.892	Poecilia_latipinna
ENSLACG00000017560	PRDM12	97	76.486	ENSPMEG00000016698	prdm12b	100	78.108	Poecilia_mexicana
ENSLACG00000017560	PRDM12	99	77.368	ENSPREG00000015073	prdm12b	99	78.947	Poecilia_reticulata
ENSLACG00000017560	PRDM12	94	77.616	ENSPREG00000003211	-	94	77.616	Poecilia_reticulata
ENSLACG00000017560	PRDM12	96	89.118	ENSPPYG00000019694	PRDM12	97	89.118	Pongo_abelii
ENSLACG00000017560	PRDM12	94	90.390	ENSPCOG00000022255	PRDM12	99	86.575	Propithecus_coquereli
ENSLACG00000017560	PRDM12	94	90.390	ENSPVAG00000001511	PRDM12	99	86.301	Pteropus_vampyrus
ENSLACG00000017560	PRDM12	99	78.191	ENSPNYG00000009607	prdm12b	100	78.191	Pundamilia_nyererei
ENSLACG00000017560	PRDM12	99	74.747	ENSPNYG00000013589	-	100	75.758	Pundamilia_nyererei
ENSLACG00000017560	PRDM12	99	76.280	ENSPNAG00000013396	PRDM12	100	77.358	Pygocentrus_nattereri
ENSLACG00000017560	PRDM12	99	84.783	ENSPNAG00000024532	prdm12b	100	85.598	Pygocentrus_nattereri
ENSLACG00000017560	PRDM12	94	90.090	ENSRNOG00000009218	Prdm12	99	86.264	Rattus_norvegicus
ENSLACG00000017560	PRDM12	89	90.823	ENSRBIG00000042712	PRDM12	98	83.565	Rhinopithecus_bieti
ENSLACG00000017560	PRDM12	90	90.938	ENSRROG00000043554	PRDM12	99	90.938	Rhinopithecus_roxellana
ENSLACG00000017560	PRDM12	99	91.831	ENSSHAG00000015972	PRDM12	99	91.831	Sarcophilus_harrisii
ENSLACG00000017560	PRDM12	99	76.093	ENSSMAG00000003754	prdm12b	100	76.350	Scophthalmus_maximus
ENSLACG00000017560	PRDM12	96	81.686	ENSSDUG00000019071	-	100	78.851	Seriola_dumerili
ENSLACG00000017560	PRDM12	99	77.023	ENSSDUG00000023498	prdm12b	100	77.546	Seriola_dumerili
ENSLACG00000017560	PRDM12	99	82.865	ENSSLDG00000013562	-	100	82.865	Seriola_lalandi_dorsalis
ENSLACG00000017560	PRDM12	99	78.215	ENSSLDG00000009557	prdm12b	100	79.003	Seriola_lalandi_dorsalis
ENSLACG00000017560	PRDM12	99	92.351	ENSSPUG00000013424	PRDM12	99	92.351	Sphenodon_punctatus
ENSLACG00000017560	PRDM12	99	77.368	ENSSPAG00000018824	prdm12b	100	78.158	Stegastes_partitus
ENSLACG00000017560	PRDM12	99	68.394	ENSSPAG00000022420	-	100	72.043	Stegastes_partitus
ENSLACG00000017560	PRDM12	94	90.390	ENSSSCG00000005703	PRDM12	99	86.777	Sus_scrofa
ENSLACG00000017560	PRDM12	99	81.081	ENSTRUG00000018659	prdm12b	100	81.081	Takifugu_rubripes
ENSLACG00000017560	PRDM12	99	79.501	ENSTRUG00000013239	-	100	79.501	Takifugu_rubripes
ENSLACG00000017560	PRDM12	100	78.333	ENSTNIG00000005859	-	100	78.333	Tetraodon_nigroviridis
ENSLACG00000017560	PRDM12	100	79.515	ENSTNIG00000009020	prdm12b	100	79.784	Tetraodon_nigroviridis
ENSLACG00000017560	PRDM12	94	90.390	ENSUAMG00000009653	PRDM12	94	89.706	Ursus_americanus
ENSLACG00000017560	PRDM12	93	90.606	ENSVVUG00000027662	PRDM12	79	90.606	Vulpes_vulpes
ENSLACG00000017560	PRDM12	99	78.610	ENSXCOG00000002836	prdm12b	99	79.412	Xiphophorus_couchianus
ENSLACG00000017560	PRDM12	99	76.562	ENSXMAG00000028012	-	100	77.865	Xiphophorus_maculatus
ENSLACG00000017560	PRDM12	99	79.200	ENSXMAG00000005537	prdm12b	100	80.000	Xiphophorus_maculatus