EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000017590 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 9014 bases
Position: chrJH126668.1:2218645-2227658
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000020010	zf-C2H2	PF00096.26	2.5e-29	1	5
ENSLACP00000020010	zf-C2H2	PF00096.26	2.5e-29	2	5
ENSLACP00000020010	zf-C2H2	PF00096.26	2.5e-29	3	5
ENSLACP00000020010	zf-C2H2	PF00096.26	2.5e-29	4	5
ENSLACP00000020010	zf-C2H2	PF00096.26	2.5e-29	5	5
ENSLACP00000020010	zf-met	PF12874.7	2.1e-09	1	2
ENSLACP00000020010	zf-met	PF12874.7	2.1e-09	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000020148	-	984	-	ENSLACP00000020010	328 (aa)	-	H3BDN9

Gene Model

Click here to download ENSLACG00000017590's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000017590's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000017590	-	52	57.500	ENSLACG00000011466	ZBTB24	55	57.500
ENSLACG00000017590	-	52	39.640	ENSLACG00000005413	snai2	51	39.640
ENSLACG00000017590	-	72	40.187	ENSLACG00000012406	ZNF423	59	40.187
ENSLACG00000017590	-	51	35.294	ENSLACG00000003588	SCRT1	54	35.294
ENSLACG00000017590	-	99	46.154	ENSLACG00000012207	GFI1B	50	78.313
ENSLACG00000017590	-	54	39.286	ENSLACG00000009187	PRDM5	80	39.286
ENSLACG00000017590	-	79	34.731	ENSLACG00000016206	PRDM15	55	34.731
ENSLACG00000017590	-	51	44.872	ENSLACG00000010025	ZNF581	75	44.872
ENSLACG00000017590	-	71	39.053	ENSLACG00000009642	-	99	39.053
ENSLACG00000017590	-	60	40.933	ENSLACG00000004191	-	74	40.933
ENSLACG00000017590	-	52	37.209	ENSLACG00000010161	MAZ	55	37.209
ENSLACG00000017590	-	57	39.716	ENSLACG00000009005	-	100	39.716
ENSLACG00000017590	-	55	45.882	ENSLACG00000022211	-	74	45.882
ENSLACG00000017590	-	69	38.235	ENSLACG00000005264	-	97	38.235
ENSLACG00000017590	-	57	39.252	ENSLACG00000007021	ZNF521	53	39.252
ENSLACG00000017590	-	63	44.311	ENSLACG00000014708	-	58	44.311
ENSLACG00000017590	-	52	42.982	ENSLACG00000007310	-	100	42.982
ENSLACG00000017590	-	54	39.286	ENSLACG00000000891	ZNF319	96	39.286
ENSLACG00000017590	-	51	36.691	ENSLACG00000017707	SNAI1	54	36.691
ENSLACG00000017590	-	68	41.317	ENSLACG00000017381	-	92	41.317

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000017590	-	99	77.222	ENSG00000162676	GFI1	99	77.222	Homo_sapiens
ENSLACG00000017590	-	54	78.090	ENSAMEG00000013858	-	91	78.090	Ailuropoda_melanoleuca
ENSLACG00000017590	-	99	45.040	ENSACIG00000016354	gfi1ab	99	45.308	Amphilophus_citrinellus
ENSLACG00000017590	-	99	43.915	ENSATEG00000009167	gfi1ab	88	43.915	Anabas_testudineus
ENSLACG00000017590	-	55	76.111	ENSAPLG00000015700	GFI1	51	76.111	Anas_platyrhynchos
ENSLACG00000017590	-	55	77.222	ENSANAG00000019656	GFI1	99	77.222	Aotus_nancymaae
ENSLACG00000017590	-	51	84.404	ENSACLG00000001258	-	88	84.404	Astatotilapia_calliptera
ENSLACG00000017590	-	99	46.884	ENSAMXG00000015228	-	96	47.590	Astyanax_mexicanus
ENSLACG00000017590	-	99	50.000	ENSAMXG00000006669	GFI1	98	50.000	Astyanax_mexicanus
ENSLACG00000017590	-	99	47.632	ENSAMXG00000039600	gfi1ab	99	47.632	Astyanax_mexicanus
ENSLACG00000017590	-	99	77.222	ENSBTAG00000016723	GFI1	99	77.222	Bos_taurus
ENSLACG00000017590	-	99	66.972	ENSCJAG00000017609	GFI1	99	66.972	Callithrix_jacchus
ENSLACG00000017590	-	99	68.571	ENSCAFG00000020155	GFI1	99	68.571	Canis_familiaris
ENSLACG00000017590	-	99	68.571	ENSCAFG00020013371	GFI1	88	68.571	Canis_lupus_dingo
ENSLACG00000017590	-	99	77.222	ENSCHIG00000016135	GFI1	99	77.222	Capra_hircus
ENSLACG00000017590	-	51	92.661	ENSCAPG00000016268	-	96	92.661	Cavia_aperea
ENSLACG00000017590	-	99	76.667	ENSCPOG00000011727	GFI1	99	76.667	Cavia_porcellus
ENSLACG00000017590	-	99	77.222	ENSCCAG00000036072	GFI1	99	77.222	Cebus_capucinus
ENSLACG00000017590	-	99	77.222	ENSCATG00000037873	GFI1	99	77.222	Cercocebus_atys
ENSLACG00000017590	-	99	77.222	ENSCLAG00000005915	GFI1	77	77.222	Chinchilla_lanigera
ENSLACG00000017590	-	99	73.600	ENSCSAG00000001469	GFI1	100	73.600	Chlorocebus_sabaeus
ENSLACG00000017590	-	51	70.060	ENSCING00000011342	-	87	70.060	Ciona_intestinalis
ENSLACG00000017590	-	52	71.515	ENSCSAVG00000005904	-	100	71.515	Ciona_savignyi
ENSLACG00000017590	-	99	77.222	ENSCANG00000034077	GFI1	99	77.222	Colobus_angolensis_palliatus
ENSLACG00000017590	-	99	77.222	ENSCGRG00001015432	Gfi1	99	77.222	Cricetulus_griseus_chok1gshd
ENSLACG00000017590	-	56	75.000	ENSCSEG00000017729	GFI1	99	74.595	Cynoglossus_semilaevis
ENSLACG00000017590	-	99	44.845	ENSCVAG00000011828	gfi1ab	99	45.953	Cyprinodon_variegatus
ENSLACG00000017590	-	58	72.775	ENSCVAG00000004930	GFI1	100	72.775	Cyprinodon_variegatus
ENSLACG00000017590	-	57	74.731	ENSDARG00000044457	gfi1ab	99	74.731	Danio_rerio
ENSLACG00000017590	-	99	77.222	ENSDNOG00000000782	GFI1	96	77.222	Dasypus_novemcinctus
ENSLACG00000017590	-	100	49.706	ENSEBUG00000008075	gfi1ab	100	49.706	Eptatretus_burgeri
ENSLACG00000017590	-	99	77.222	ENSEASG00005015509	GFI1	85	77.222	Equus_asinus_asinus
ENSLACG00000017590	-	99	73.600	ENSECAG00000006647	GFI1	86	73.600	Equus_caballus
ENSLACG00000017590	-	55	77.222	ENSEEUG00000000198	GFI1	99	77.222	Erinaceus_europaeus
ENSLACG00000017590	-	57	75.806	ENSELUG00000019033	GFI1	99	47.291	Esox_lucius
ENSLACG00000017590	-	99	45.363	ENSELUG00000003015	gfi1ab	98	72.081	Esox_lucius
ENSLACG00000017590	-	99	68.571	ENSFCAG00000005914	GFI1	99	68.571	Felis_catus
ENSLACG00000017590	-	99	44.246	ENSFHEG00000010997	gfi1ab	99	45.641	Fundulus_heteroclitus
ENSLACG00000017590	-	99	46.354	ENSGMOG00000007737	gfi1ab	99	46.335	Gadus_morhua
ENSLACG00000017590	-	99	44.938	ENSGALG00000043650	GFI1	99	45.432	Gallus_gallus
ENSLACG00000017590	-	58	73.016	ENSGAFG00000018063	GFI1	100	72.251	Gambusia_affinis
ENSLACG00000017590	-	99	42.092	ENSGAFG00000016637	gfi1ab	99	44.246	Gambusia_affinis
ENSLACG00000017590	-	99	39.466	ENSGAFG00000014303	-	89	40.533	Gambusia_affinis
ENSLACG00000017590	-	99	46.234	ENSGACG00000004257	gfi1ab	96	44.819	Gasterosteus_aculeatus
ENSLACG00000017590	-	99	77.222	ENSGGOG00000005320	GFI1	99	77.222	Gorilla_gorilla
ENSLACG00000017590	-	99	77.222	ENSHGLG00000008020	GFI1	99	77.222	Heterocephalus_glaber_female
ENSLACG00000017590	-	99	77.222	ENSHGLG00100000610	GFI1	99	77.222	Heterocephalus_glaber_male
ENSLACG00000017590	-	99	43.250	ENSHCOG00000008590	gfi1ab	99	43.687	Hippocampus_comes
ENSLACG00000017590	-	99	49.558	ENSHCOG00000019555	GFI1	99	49.558	Hippocampus_comes
ENSLACG00000017590	-	99	46.988	ENSIPUG00000021407	-	96	47.576	Ictalurus_punctatus
ENSLACG00000017590	-	99	46.373	ENSIPUG00000010071	gfi1ab	86	46.373	Ictalurus_punctatus
ENSLACG00000017590	-	99	46.193	ENSIPUG00000013414	GFI1	99	46.482	Ictalurus_punctatus
ENSLACG00000017590	-	99	77.222	ENSSTOG00000014583	GFI1	99	77.222	Ictidomys_tridecemlineatus
ENSLACG00000017590	-	51	92.661	ENSJJAG00000022622	-	96	92.661	Jaculus_jaculus
ENSLACG00000017590	-	99	46.410	ENSKMAG00000003810	gfi1ab	99	46.410	Kryptolebias_marmoratus
ENSLACG00000017590	-	99	77.222	ENSLAFG00000018346	GFI1	99	77.222	Loxodonta_africana
ENSLACG00000017590	-	99	77.222	ENSMFAG00000045801	GFI1	99	77.222	Macaca_fascicularis
ENSLACG00000017590	-	99	77.222	ENSMNEG00000036338	GFI1	99	77.222	Macaca_nemestrina
ENSLACG00000017590	-	99	77.222	ENSMLEG00000036181	GFI1	99	77.222	Mandrillus_leucophaeus
ENSLACG00000017590	-	99	45.855	ENSMAMG00000008125	gfi1ab	99	45.855	Mastacembelus_armatus
ENSLACG00000017590	-	57	73.797	ENSMGAG00000008187	GFI1	53	73.797	Meleagris_gallopavo
ENSLACG00000017590	-	99	77.222	ENSMICG00000047208	GFI1	99	77.222	Microcebus_murinus
ENSLACG00000017590	-	99	47.989	ENSMMOG00000005556	gfi1ab	99	47.989	Mola_mola
ENSLACG00000017590	-	99	75.000	ENSMODG00000011802	GFI1	99	75.000	Monodelphis_domestica
ENSLACG00000017590	-	99	44.186	ENSMALG00000014672	gfi1ab	99	46.615	Monopterus_albus
ENSLACG00000017590	-	99	77.222	MGP_CAROLIEiJ_G0027508	Gfi1	96	84.962	Mus_caroli
ENSLACG00000017590	-	55	77.222	ENSMUSG00000029275	Gfi1	99	77.222	Mus_musculus
ENSLACG00000017590	-	99	77.222	MGP_PahariEiJ_G0017280	Gfi1	96	84.962	Mus_pahari
ENSLACG00000017590	-	99	74.737	MGP_SPRETEiJ_G0028507	Gfi1	99	74.737	Mus_spretus
ENSLACG00000017590	-	99	51.467	ENSMPUG00000004178	GFI1	96	51.467	Mustela_putorius_furo
ENSLACG00000017590	-	99	77.222	ENSMLUG00000015191	GFI1	97	77.222	Myotis_lucifugus
ENSLACG00000017590	-	50	81.739	ENSNBRG00000010351	-	89	81.739	Neolamprologus_brichardi
ENSLACG00000017590	-	51	79.464	ENSNBRG00000001834	-	88	79.464	Neolamprologus_brichardi
ENSLACG00000017590	-	86	77.222	ENSNLEG00000010470	GFI1	95	77.222	Nomascus_leucogenys
ENSLACG00000017590	-	99	77.222	ENSOPRG00000001473	GFI1	99	77.222	Ochotona_princeps
ENSLACG00000017590	-	99	73.810	ENSOCUG00000023553	GFI1	93	73.810	Oryctolagus_cuniculus
ENSLACG00000017590	-	99	46.457	ENSORLG00000013806	gfi1ab	99	46.457	Oryzias_latipes
ENSLACG00000017590	-	99	45.431	ENSORLG00020001602	gfi1ab	99	45.431	Oryzias_latipes_hni
ENSLACG00000017590	-	99	50.286	ENSORLG00020002817	GFI1	99	50.286	Oryzias_latipes_hni
ENSLACG00000017590	-	99	52.500	ENSOGAG00000027913	GFI1	99	52.500	Otolemur_garnettii
ENSLACG00000017590	-	99	47.482	ENSOARG00000016329	GFI1	94	48.201	Ovis_aries
ENSLACG00000017590	-	99	51.781	ENSPPAG00000042186	GFI1	99	51.781	Pan_paniscus
ENSLACG00000017590	-	99	68.571	ENSPPRG00000007521	GFI1	99	68.571	Panthera_pardus
ENSLACG00000017590	-	51	92.661	ENSPTIG00000002680	-	81	92.661	Panthera_tigris_altaica
ENSLACG00000017590	-	99	77.222	ENSPTRG00000043053	GFI1	99	77.222	Pan_troglodytes
ENSLACG00000017590	-	99	77.222	ENSPANG00000016433	GFI1	99	77.222	Papio_anubis
ENSLACG00000017590	-	99	46.500	ENSPKIG00000004263	GFI1	99	46.500	Paramormyrops_kingsleyae
ENSLACG00000017590	-	99	48.315	ENSPMGG00000011041	GFI1	52	80.120	Periophthalmus_magnuspinnatus
ENSLACG00000017590	-	55	76.111	ENSPMGG00000012546	gfi1ab	99	46.842	Periophthalmus_magnuspinnatus
ENSLACG00000017590	-	99	74.468	ENSPCIG00000013728	GFI1	99	64.224	Phascolarctos_cinereus
ENSLACG00000017590	-	99	40.176	ENSPFOG00000024581	-	99	39.883	Poecilia_formosa
ENSLACG00000017590	-	58	72.775	ENSPLAG00000005376	GFI1	91	72.775	Poecilia_latipinna
ENSLACG00000017590	-	99	49.851	ENSPLAG00000010879	gfi1ab	99	49.851	Poecilia_latipinna
ENSLACG00000017590	-	99	43.333	ENSPREG00000014097	gfi1ab	99	44.987	Poecilia_reticulata
ENSLACG00000017590	-	99	49.292	ENSPREG00000007997	GFI1	99	63.402	Poecilia_reticulata
ENSLACG00000017590	-	97	90.991	ENSPCAG00000011020	GFI1	63	90.991	Procavia_capensis
ENSLACG00000017590	-	99	77.222	ENSPCOG00000020540	GFI1	99	77.222	Propithecus_coquereli
ENSLACG00000017590	-	57	74.468	ENSPVAG00000006928	GFI1	99	69.048	Pteropus_vampyrus
ENSLACG00000017590	-	51	83.636	ENSPNYG00000001775	-	86	83.636	Pundamilia_nyererei
ENSLACG00000017590	-	54	76.404	ENSPNAG00000028014	GFI1	99	46.579	Pygocentrus_nattereri
ENSLACG00000017590	-	55	66.667	ENSPNAG00000014299	-	58	66.667	Pygocentrus_nattereri
ENSLACG00000017590	-	99	46.842	ENSPNAG00000027258	gfi1ab	99	46.438	Pygocentrus_nattereri
ENSLACG00000017590	-	55	77.222	ENSRNOG00000002042	Gfi1	99	77.222	Rattus_norvegicus
ENSLACG00000017590	-	99	77.222	ENSRBIG00000036467	GFI1	99	77.222	Rhinopithecus_bieti
ENSLACG00000017590	-	99	77.222	ENSRROG00000031687	GFI1	99	77.222	Rhinopithecus_roxellana
ENSLACG00000017590	-	99	77.222	ENSSBOG00000031300	GFI1	99	77.222	Saimiri_boliviensis_boliviensis
ENSLACG00000017590	-	99	47.150	ENSSFOG00015020295	gfi1	99	47.409	Scleropages_formosus
ENSLACG00000017590	-	52	66.667	ENSSFOG00015008114	-	53	66.667	Scleropages_formosus
ENSLACG00000017590	-	99	45.385	ENSSMAG00000002782	gfi1ab	99	45.385	Scophthalmus_maximus
ENSLACG00000017590	-	99	45.195	ENSSDUG00000022410	gfi1ab	99	45.144	Seriola_dumerili
ENSLACG00000017590	-	50	83.636	ENSSLDG00000017614	-	83	83.636	Seriola_lalandi_dorsalis
ENSLACG00000017590	-	99	45.195	ENSSLDG00000020163	gfi1ab	99	45.144	Seriola_lalandi_dorsalis
ENSLACG00000017590	-	99	51.692	ENSSPAG00000009140	gfi1ab	98	51.692	Stegastes_partitus
ENSLACG00000017590	-	99	77.222	ENSSSCG00000006902	GFI1	99	77.222	Sus_scrofa
ENSLACG00000017590	-	55	75.556	ENSTGUG00000006060	GFI1	51	75.556	Taeniopygia_guttata
ENSLACG00000017590	-	99	45.714	ENSTRUG00000000415	gfi1ab	99	46.354	Takifugu_rubripes
ENSLACG00000017590	-	99	46.954	ENSTNIG00000000651	gfi1ab	96	47.949	Tetraodon_nigroviridis
ENSLACG00000017590	-	99	68.932	ENSTTRG00000000082	GFI1	99	68.932	Tursiops_truncatus
ENSLACG00000017590	-	55	77.222	ENSUAMG00000021124	GFI1	90	45.209	Ursus_americanus
ENSLACG00000017590	-	55	77.778	ENSXETG00000023006	gfi1	97	45.995	Xenopus_tropicalis
ENSLACG00000017590	-	51	90.654	ENSXCOG00000009186	-	86	90.654	Xiphophorus_couchianus
ENSLACG00000017590	-	99	67.391	ENSXMAG00000009274	GFI1	70	67.391	Xiphophorus_maculatus
ENSLACG00000017590	-	99	40.476	ENSXMAG00000006527	-	99	40.060	Xiphophorus_maculatus