EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000017874 (Gene tree)
Gene ID: 102354399
Gene Symbol: -
Alias: -
Full Name: serine/arginine-rich splicing factor 5-like
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 47049 bases
Position: chrJH126660.1:2450397-2497445
Accession: 102354399
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000020342	RRM_1	PF00076.22	1e-33	1	2
ENSLACP00000020342	RRM_1	PF00076.22	1e-33	2	2
ENSLACP00000020343	RRM_1	PF00076.22	1.1e-33	1	2
ENSLACP00000020343	RRM_1	PF00076.22	1.1e-33	2	2
ENSLACP00000020342	RRM_3	PF08777.11	6.7e-08	1	1
ENSLACP00000020343	RRM_3	PF08777.11	7.3e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000020482	-	1787	XM_005991504	ENSLACP00000020342	258 (aa)	XP_005991566	H3BEM1
ENSLACT00000020483	-	789	-	ENSLACP00000020343	263 (aa)	-	H3BEM2

Gene Model

Click here to download ENSLACG00000017874's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm03040	Spliceosome	KEGG
lcm05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000017874's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000017874	-	67	40.884	ENSLACG00000018228	SRSF9	71	44.767
ENSLACG00000017874	-	69	74.586	ENSLACG00000005874	SRSF5	67	72.376
ENSLACG00000017874	-	69	63.889	ENSLACG00000005466	SRSF6	53	63.687
ENSLACG00000017874	-	78	38.095	ENSLACG00000014160	srsf1a	62	43.931

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000017874	-	70	80.978	ENSAPOG00000017395	srsf5a	62	83.696	Acanthochromis_polyacanthus
ENSLACG00000017874	-	70	80.749	ENSACIG00000011892	srsf5a	96	80.597	Amphilophus_citrinellus
ENSLACG00000017874	-	70	82.514	ENSAOCG00000014967	srsf5a	62	84.153	Amphiprion_ocellaris
ENSLACG00000017874	-	70	82.514	ENSAPEG00000009297	srsf5a	62	84.153	Amphiprion_percula
ENSLACG00000017874	-	70	82.353	ENSATEG00000000198	srsf5a	65	82.353	Anabas_testudineus
ENSLACG00000017874	-	70	80.769	ENSAPLG00000002469	-	70	79.670	Anas_platyrhynchos
ENSLACG00000017874	-	70	84.530	ENSACAG00000029015	-	68	82.873	Anolis_carolinensis
ENSLACG00000017874	-	70	80.105	ENSACLG00000027166	srsf5a	65	80.628	Astatotilapia_calliptera
ENSLACG00000017874	-	70	84.324	ENSAMXG00000030476	srsf5a	67	83.784	Astyanax_mexicanus
ENSLACG00000017874	-	88	84.141	ENSCPBG00000021518	-	88	81.938	Chrysemys_picta_bellii
ENSLACG00000017874	-	72	57.143	ENSCSAVG00000011376	-	78	56.122	Ciona_savignyi
ENSLACG00000017874	-	70	78.756	ENSCSEG00000008109	srsf5a	62	78.756	Cynoglossus_semilaevis
ENSLACG00000017874	-	71	73.936	ENSCVAG00000016982	srsf5a	96	72.932	Cyprinodon_variegatus
ENSLACG00000017874	-	71	83.511	ENSDARG00000029818	srsf5a	95	82.677	Danio_rerio
ENSLACG00000017874	-	72	78.680	ENSELUG00000020439	srsf5a	62	77.157	Esox_lucius
ENSLACG00000017874	-	70	81.111	ENSFALG00000005098	-	85	74.895	Ficedula_albicollis
ENSLACG00000017874	-	72	72.000	ENSFHEG00000003955	srsf5a	97	68.276	Fundulus_heteroclitus
ENSLACG00000017874	-	70	83.333	ENSGMOG00000000869	srsf5a	94	82.778	Gadus_morhua
ENSLACG00000017874	-	70	80.556	ENSGALG00000033259	SRSF5A	63	80.000	Gallus_gallus
ENSLACG00000017874	-	70	72.222	ENSGAFG00000018237	srsf5a	54	72.222	Gambusia_affinis
ENSLACG00000017874	-	70	85.000	ENSGACG00000011761	srsf5a	70	85.556	Gasterosteus_aculeatus
ENSLACG00000017874	-	88	84.581	ENSGAGG00000007312	-	88	82.379	Gopherus_agassizii
ENSLACG00000017874	-	70	80.526	ENSHBUG00000014048	srsf5a	64	81.053	Haplochromis_burtoni
ENSLACG00000017874	-	70	81.720	ENSHCOG00000017557	srsf5a	62	82.796	Hippocampus_comes
ENSLACG00000017874	-	70	82.632	ENSIPUG00000003439	srsf5a	69	80.000	Ictalurus_punctatus
ENSLACG00000017874	-	72	75.263	ENSKMAG00000014937	srsf5a	58	73.822	Kryptolebias_marmoratus
ENSLACG00000017874	-	72	74.752	ENSLBEG00000017153	srsf5a	74	76.923	Labrus_bergylta
ENSLACG00000017874	-	70	84.865	ENSLOCG00000014075	srsf5a	61	83.243	Lepisosteus_oculatus
ENSLACG00000017874	-	70	85.165	ENSMAMG00000000192	srsf5a	65	85.083	Mastacembelus_armatus
ENSLACG00000017874	-	70	80.526	ENSMZEG00005010485	srsf5a	64	81.053	Maylandia_zebra
ENSLACG00000017874	-	74	78.238	ENSMGAG00000011888	-	96	80.247	Meleagris_gallopavo
ENSLACG00000017874	-	70	83.889	ENSMMOG00000009793	srsf5a	61	83.889	Mola_mola
ENSLACG00000017874	-	70	80.556	ENSMALG00000021194	srsf5a	63	80.000	Monopterus_albus
ENSLACG00000017874	-	70	79.894	ENSNBRG00000000771	srsf5a	64	81.481	Neolamprologus_brichardi
ENSLACG00000017874	-	70	79.894	ENSONIG00000019583	srsf5a	64	81.481	Oreochromis_niloticus
ENSLACG00000017874	-	70	75.000	ENSORLG00000009268	srsf5a	67	80.110	Oryzias_latipes
ENSLACG00000017874	-	72	76.562	ENSORLG00020003281	srsf5	67	80.110	Oryzias_latipes_hni
ENSLACG00000017874	-	72	76.562	ENSORLG00015023075	srsf5	67	80.110	Oryzias_latipes_hsok
ENSLACG00000017874	-	70	81.111	ENSOMEG00000000628	srsf5a	66	81.111	Oryzias_melastigma
ENSLACG00000017874	-	70	86.559	ENSPKIG00000002054	srsf5a	68	84.946	Paramormyrops_kingsleyae
ENSLACG00000017874	-	70	82.873	ENSPSIG00000008238	-	69	81.768	Pelodiscus_sinensis
ENSLACG00000017874	-	71	80.000	ENSPMGG00000020125	srsf5a	55	80.328	Periophthalmus_magnuspinnatus
ENSLACG00000017874	-	70	74.869	ENSPFOG00000022993	srsf5a	60	74.869	Poecilia_formosa
ENSLACG00000017874	-	69	74.737	ENSPLAG00000005508	srsf5a	59	74.737	Poecilia_latipinna
ENSLACG00000017874	-	70	74.869	ENSPMEG00000016339	srsf5a	60	74.869	Poecilia_mexicana
ENSLACG00000017874	-	70	74.479	ENSPREG00000018091	srsf5a	61	74.479	Poecilia_reticulata
ENSLACG00000017874	-	70	80.526	ENSPNYG00000021245	srsf5a	64	81.053	Pundamilia_nyererei
ENSLACG00000017874	-	70	83.152	ENSPNAG00000021333	srsf5a	66	81.522	Pygocentrus_nattereri
ENSLACG00000017874	-	70	84.409	ENSSFOG00015008377	srsf5	66	81.720	Scleropages_formosus
ENSLACG00000017874	-	70	78.000	ENSSMAG00000010899	srsf5a	66	78.000	Scophthalmus_maximus
ENSLACG00000017874	-	98	66.667	ENSSDUG00000006103	srsf5a	63	84.615	Seriola_dumerili
ENSLACG00000017874	-	98	66.667	ENSSLDG00000004146	srsf5a	63	84.615	Seriola_lalandi_dorsalis
ENSLACG00000017874	-	70	81.215	ENSSPUG00000002052	-	68	78.453	Sphenodon_punctatus
ENSLACG00000017874	-	70	82.514	ENSSPAG00000002821	srsf5a	63	84.153	Stegastes_partitus
ENSLACG00000017874	-	70	81.111	ENSTGUG00000011492	-	68	80.556	Taeniopygia_guttata
ENSLACG00000017874	-	70	77.083	ENSTRUG00000022908	srsf5a	87	65.251	Takifugu_rubripes
ENSLACG00000017874	-	97	76.834	ENSXETG00000017937	srsf5a	89	79.487	Xenopus_tropicalis
ENSLACG00000017874	-	72	76.316	ENSXCOG00000015338	srsf5a	61	76.316	Xiphophorus_couchianus
ENSLACG00000017874	-	70	74.093	ENSXMAG00000012823	srsf5a	61	74.611	Xiphophorus_maculatus