EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000017890 (Gene tree)
Gene ID: 102349140
Gene Symbol: SRP54
Alias: -
Full Name: signal recognition particle 54
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Minus strand
Length: 30199 bases
Position: chrJH126598.1:2469571-2499769
Accession: 102349140
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000020361	SRP54	PF00448.22	1.7e-77	1	1
ENSLACP00000020361	SRP54_N	PF02881.19	1.4e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000020501	SRP54-201	3255	XM_005989177	ENSLACP00000020361	504 (aa)	XP_005989239	H3BEP0

Gene Model

Click here to download ENSLACG00000017890's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm03060	Protein export	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000017890's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000017890	SRP54	100	96.032	ENSG00000100883	SRP54	100	100.000	Homo_sapiens
ENSLACG00000017890	SRP54	100	95.833	ENSAPOG00000011314	srp54	100	95.833	Acanthochromis_polyacanthus
ENSLACG00000017890	SRP54	100	96.032	ENSAMEG00000015544	SRP54	100	96.032	Ailuropoda_melanoleuca
ENSLACG00000017890	SRP54	89	93.987	ENSACIG00000022831	srp54	97	93.987	Amphilophus_citrinellus
ENSLACG00000017890	SRP54	100	95.833	ENSAOCG00000019401	srp54	100	95.833	Amphiprion_ocellaris
ENSLACG00000017890	SRP54	100	95.833	ENSAPEG00000001977	srp54	100	95.833	Amphiprion_percula
ENSLACG00000017890	SRP54	100	95.437	ENSATEG00000013877	srp54	100	95.437	Anabas_testudineus
ENSLACG00000017890	SRP54	94	95.992	ENSAPLG00000010125	SRP54	95	95.992	Anas_platyrhynchos
ENSLACG00000017890	SRP54	86	92.166	ENSACAG00000010631	-	100	92.166	Anolis_carolinensis
ENSLACG00000017890	SRP54	100	95.437	ENSACAG00000002103	-	100	95.437	Anolis_carolinensis
ENSLACG00000017890	SRP54	65	79.758	ENSACAG00000001124	-	100	79.758	Anolis_carolinensis
ENSLACG00000017890	SRP54	100	96.032	ENSANAG00000022133	SRP54	100	96.032	Aotus_nancymaae
ENSLACG00000017890	SRP54	100	95.635	ENSACLG00000015866	srp54	100	95.635	Astatotilapia_calliptera
ENSLACG00000017890	SRP54	100	95.635	ENSAMXG00000032669	SRP54	100	95.635	Astyanax_mexicanus
ENSLACG00000017890	SRP54	100	96.032	ENSBTAG00000019085	SRP54	100	96.032	Bos_taurus
ENSLACG00000017890	SRP54	98	72.088	WBGene00009012	F21D5.7	100	72.088	Caenorhabditis_elegans
ENSLACG00000017890	SRP54	100	96.032	ENSCJAG00000006581	SRP54	100	96.032	Callithrix_jacchus
ENSLACG00000017890	SRP54	100	96.032	ENSCAFG00000013331	SRP54	100	96.032	Canis_familiaris
ENSLACG00000017890	SRP54	100	96.032	ENSCAFG00020023427	SRP54	100	96.032	Canis_lupus_dingo
ENSLACG00000017890	SRP54	100	96.032	ENSCHIG00000026345	SRP54	100	96.032	Capra_hircus
ENSLACG00000017890	SRP54	100	96.230	ENSTSYG00000002680	-	100	96.230	Carlito_syrichta
ENSLACG00000017890	SRP54	94	85.263	ENSTSYG00000035333	-	93	85.263	Carlito_syrichta
ENSLACG00000017890	SRP54	94	62.245	ENSCAPG00000008780	SRP54	100	62.245	Cavia_aperea
ENSLACG00000017890	SRP54	100	95.635	ENSCPOG00000003691	SRP54	100	95.635	Cavia_porcellus
ENSLACG00000017890	SRP54	90	95.238	ENSCCAG00000024179	SRP54	100	95.465	Cebus_capucinus
ENSLACG00000017890	SRP54	100	96.032	ENSCATG00000034083	SRP54	100	96.032	Cercocebus_atys
ENSLACG00000017890	SRP54	100	96.032	ENSCLAG00000015076	SRP54	100	96.032	Chinchilla_lanigera
ENSLACG00000017890	SRP54	100	96.032	ENSCSAG00000015575	SRP54	100	96.032	Chlorocebus_sabaeus
ENSLACG00000017890	SRP54	95	84.823	ENSCHOG00000008986	SRP54	100	84.823	Choloepus_hoffmanni
ENSLACG00000017890	SRP54	100	96.032	ENSCPBG00000026195	SRP54	100	96.032	Chrysemys_picta_bellii
ENSLACG00000017890	SRP54	100	82.143	ENSCING00000007380	-	100	82.143	Ciona_intestinalis
ENSLACG00000017890	SRP54	100	96.032	ENSCANG00000028532	SRP54	100	96.032	Colobus_angolensis_palliatus
ENSLACG00000017890	SRP54	100	95.833	ENSCGRG00001009525	-	100	95.833	Cricetulus_griseus_chok1gshd
ENSLACG00000017890	SRP54	76	96.623	ENSCGRG00000009453	-	89	96.623	Cricetulus_griseus_crigri
ENSLACG00000017890	SRP54	100	95.040	ENSCSEG00000012392	srp54	100	95.040	Cynoglossus_semilaevis
ENSLACG00000017890	SRP54	100	95.437	ENSCVAG00000010395	srp54	100	95.437	Cyprinodon_variegatus
ENSLACG00000017890	SRP54	100	96.429	ENSDARG00000098367	srp54	100	96.429	Danio_rerio
ENSLACG00000017890	SRP54	100	96.032	ENSDNOG00000032525	SRP54	100	96.032	Dasypus_novemcinctus
ENSLACG00000017890	SRP54	89	81.637	ENSDORG00000005159	-	98	81.637	Dipodomys_ordii
ENSLACG00000017890	SRP54	96	78.557	FBgn0010747	Srp54k	98	78.112	Drosophila_melanogaster
ENSLACG00000017890	SRP54	100	94.841	ENSETEG00000016307	-	100	94.841	Echinops_telfairi
ENSLACG00000017890	SRP54	83	55.742	ENSETEG00000012102	-	99	55.742	Echinops_telfairi
ENSLACG00000017890	SRP54	100	88.095	ENSEBUG00000009437	-	100	88.095	Eptatretus_burgeri
ENSLACG00000017890	SRP54	100	96.032	ENSEASG00005002057	SRP54	100	96.032	Equus_asinus_asinus
ENSLACG00000017890	SRP54	99	95.783	ENSECAG00000018042	SRP54	98	95.783	Equus_caballus
ENSLACG00000017890	SRP54	100	80.159	ENSEEUG00000001511	SRP54	100	80.159	Erinaceus_europaeus
ENSLACG00000017890	SRP54	100	95.635	ENSELUG00000003395	srp54	100	95.635	Esox_lucius
ENSLACG00000017890	SRP54	100	95.833	ENSFCAG00000032033	SRP54	100	95.833	Felis_catus
ENSLACG00000017890	SRP54	100	96.032	ENSFALG00000005995	SRP54	100	96.032	Ficedula_albicollis
ENSLACG00000017890	SRP54	100	96.032	ENSFDAG00000016767	SRP54	100	96.032	Fukomys_damarensis
ENSLACG00000017890	SRP54	100	95.833	ENSFHEG00000004263	srp54	100	95.833	Fundulus_heteroclitus
ENSLACG00000017890	SRP54	95	90.586	ENSGMOG00000011391	srp54	100	90.586	Gadus_morhua
ENSLACG00000017890	SRP54	100	96.032	ENSGALG00000023135	SRP54	100	96.032	Gallus_gallus
ENSLACG00000017890	SRP54	100	95.635	ENSGAFG00000011586	srp54	100	95.635	Gambusia_affinis
ENSLACG00000017890	SRP54	100	96.230	ENSGACG00000004181	srp54	100	96.230	Gasterosteus_aculeatus
ENSLACG00000017890	SRP54	100	96.032	ENSGAGG00000014766	SRP54	100	96.032	Gopherus_agassizii
ENSLACG00000017890	SRP54	100	96.032	ENSGGOG00000002926	SRP54	100	96.032	Gorilla_gorilla
ENSLACG00000017890	SRP54	100	95.635	ENSHBUG00000005678	srp54	100	95.635	Haplochromis_burtoni
ENSLACG00000017890	SRP54	100	96.032	ENSHGLG00000002850	SRP54	100	96.032	Heterocephalus_glaber_female
ENSLACG00000017890	SRP54	100	96.032	ENSHGLG00100005263	SRP54	100	96.032	Heterocephalus_glaber_male
ENSLACG00000017890	SRP54	100	66.733	ENSHGLG00100007281	-	100	66.733	Heterocephalus_glaber_male
ENSLACG00000017890	SRP54	100	94.444	ENSHCOG00000021127	srp54	100	94.444	Hippocampus_comes
ENSLACG00000017890	SRP54	100	96.429	ENSIPUG00000001420	srp54	100	96.429	Ictalurus_punctatus
ENSLACG00000017890	SRP54	100	96.032	ENSSTOG00000016023	SRP54	100	96.032	Ictidomys_tridecemlineatus
ENSLACG00000017890	SRP54	100	90.873	ENSJJAG00000013417	-	100	90.873	Jaculus_jaculus
ENSLACG00000017890	SRP54	87	74.318	ENSJJAG00000016404	-	100	74.318	Jaculus_jaculus
ENSLACG00000017890	SRP54	100	95.040	ENSKMAG00000007707	srp54	100	95.040	Kryptolebias_marmoratus
ENSLACG00000017890	SRP54	100	95.833	ENSLBEG00000021122	srp54	100	95.833	Labrus_bergylta
ENSLACG00000017890	SRP54	100	95.833	ENSLBEG00000018690	srp54	100	95.833	Labrus_bergylta
ENSLACG00000017890	SRP54	100	96.230	ENSLOCG00000009440	srp54	100	96.230	Lepisosteus_oculatus
ENSLACG00000017890	SRP54	100	96.032	ENSLAFG00000012007	SRP54	100	96.032	Loxodonta_africana
ENSLACG00000017890	SRP54	100	96.032	ENSMFAG00000044371	SRP54	100	96.032	Macaca_fascicularis
ENSLACG00000017890	SRP54	100	96.032	ENSMMUG00000015073	FAM177A1	100	96.032	Macaca_mulatta
ENSLACG00000017890	SRP54	100	96.032	ENSMNEG00000006947	SRP54	100	96.032	Macaca_nemestrina
ENSLACG00000017890	SRP54	100	96.032	ENSMLEG00000042251	SRP54	100	96.032	Mandrillus_leucophaeus
ENSLACG00000017890	SRP54	100	95.635	ENSMAMG00000004803	srp54	100	95.635	Mastacembelus_armatus
ENSLACG00000017890	SRP54	100	95.635	ENSMZEG00005027528	srp54	100	95.635	Maylandia_zebra
ENSLACG00000017890	SRP54	100	91.502	ENSMGAG00000012481	SRP54	100	91.502	Meleagris_gallopavo
ENSLACG00000017890	SRP54	100	96.032	ENSMAUG00000014447	-	100	96.032	Mesocricetus_auratus
ENSLACG00000017890	SRP54	100	96.032	ENSMICG00000010270	SRP54	100	96.032	Microcebus_murinus
ENSLACG00000017890	SRP54	87	95.682	ENSMOCG00000000948	-	100	95.682	Microtus_ochrogaster
ENSLACG00000017890	SRP54	90	92.952	ENSMMOG00000020303	srp54	99	92.952	Mola_mola
ENSLACG00000017890	SRP54	100	96.230	ENSMODG00000012925	-	100	96.230	Monodelphis_domestica
ENSLACG00000017890	SRP54	100	96.230	ENSMODG00000023150	-	100	96.230	Monodelphis_domestica
ENSLACG00000017890	SRP54	88	94.808	ENSMALG00000009163	srp54	98	94.808	Monopterus_albus
ENSLACG00000017890	SRP54	100	96.032	MGP_CAROLIEiJ_G0017754	-	100	96.032	Mus_caroli
ENSLACG00000017890	SRP54	100	96.032	ENSMUSG00000073079	Srp54a	100	98.182	Mus_musculus
ENSLACG00000017890	SRP54	100	95.238	ENSMUSG00000079108	Srp54c	100	95.238	Mus_musculus
ENSLACG00000017890	SRP54	100	96.032	ENSMUSG00000112449	Srp54b	100	96.032	Mus_musculus
ENSLACG00000017890	SRP54	100	96.032	MGP_PahariEiJ_G0029510	-	100	96.032	Mus_pahari
ENSLACG00000017890	SRP54	100	96.032	ENSMPUG00000016302	SRP54	100	96.032	Mustela_putorius_furo
ENSLACG00000017890	SRP54	100	95.437	ENSMLUG00000008958	SRP54	100	95.437	Myotis_lucifugus
ENSLACG00000017890	SRP54	100	86.706	ENSNGAG00000019806	-	100	86.706	Nannospalax_galili
ENSLACG00000017890	SRP54	87	95.455	ENSNBRG00000006000	srp54	100	95.455	Neolamprologus_brichardi
ENSLACG00000017890	SRP54	100	96.032	ENSNLEG00000003496	SRP54	100	96.032	Nomascus_leucogenys
ENSLACG00000017890	SRP54	67	100.000	ENSMEUG00000000138	-	76	100.000	Notamacropus_eugenii
ENSLACG00000017890	SRP54	58	95.082	ENSOPRG00000014502	-	60	95.082	Ochotona_princeps
ENSLACG00000017890	SRP54	100	96.032	ENSODEG00000004865	SRP54	100	96.032	Octodon_degus
ENSLACG00000017890	SRP54	100	95.635	ENSONIG00000011768	srp54	100	95.635	Oreochromis_niloticus
ENSLACG00000017890	SRP54	100	96.032	ENSOANG00000014051	SRP54	100	96.032	Ornithorhynchus_anatinus
ENSLACG00000017890	SRP54	100	95.437	ENSOCUG00000007838	SRP54	100	95.437	Oryctolagus_cuniculus
ENSLACG00000017890	SRP54	100	95.833	ENSORLG00000010027	srp54	100	95.833	Oryzias_latipes
ENSLACG00000017890	SRP54	100	95.833	ENSORLG00020001878	srp54	100	95.833	Oryzias_latipes_hni
ENSLACG00000017890	SRP54	100	95.833	ENSORLG00015021866	srp54	100	95.833	Oryzias_latipes_hsok
ENSLACG00000017890	SRP54	100	95.635	ENSOMEG00000020952	srp54	100	95.635	Oryzias_melastigma
ENSLACG00000017890	SRP54	100	96.032	ENSOGAG00000012188	SRP54	100	96.032	Otolemur_garnettii
ENSLACG00000017890	SRP54	100	96.032	ENSOARG00000007160	SRP54	100	96.032	Ovis_aries
ENSLACG00000017890	SRP54	100	96.032	ENSPPAG00000017434	SRP54	100	96.032	Pan_paniscus
ENSLACG00000017890	SRP54	100	94.841	ENSPPRG00000014047	SRP54	100	94.841	Panthera_pardus
ENSLACG00000017890	SRP54	100	95.833	ENSPTIG00000000744	SRP54	96	95.833	Panthera_tigris_altaica
ENSLACG00000017890	SRP54	100	96.032	ENSPTRG00000006259	FAM177A1	100	96.032	Pan_troglodytes
ENSLACG00000017890	SRP54	100	96.032	ENSPANG00000023853	SRP54	100	96.032	Papio_anubis
ENSLACG00000017890	SRP54	100	96.032	ENSPKIG00000001953	srp54	100	96.032	Paramormyrops_kingsleyae
ENSLACG00000017890	SRP54	100	95.833	ENSPSIG00000006476	SRP54	100	95.833	Pelodiscus_sinensis
ENSLACG00000017890	SRP54	91	92.174	ENSPMGG00000004127	srp54	99	92.174	Periophthalmus_magnuspinnatus
ENSLACG00000017890	SRP54	100	84.325	ENSPEMG00000019634	-	100	84.325	Peromyscus_maniculatus_bairdii
ENSLACG00000017890	SRP54	100	89.286	ENSPMAG00000006078	-	100	89.286	Petromyzon_marinus
ENSLACG00000017890	SRP54	100	96.032	ENSPCIG00000016175	SRP54	100	96.032	Phascolarctos_cinereus
ENSLACG00000017890	SRP54	100	95.635	ENSPFOG00000008870	srp54	100	95.635	Poecilia_formosa
ENSLACG00000017890	SRP54	100	95.635	ENSPLAG00000009889	srp54	100	95.635	Poecilia_latipinna
ENSLACG00000017890	SRP54	100	95.635	ENSPMEG00000008601	srp54	100	95.635	Poecilia_mexicana
ENSLACG00000017890	SRP54	100	95.635	ENSPREG00000004505	srp54	100	95.635	Poecilia_reticulata
ENSLACG00000017890	SRP54	100	91.071	ENSPPYG00000005739	SRP54	100	91.071	Pongo_abelii
ENSLACG00000017890	SRP54	100	92.262	ENSPCAG00000006268	SRP54	100	92.262	Procavia_capensis
ENSLACG00000017890	SRP54	100	94.059	ENSPCOG00000022473	SRP54	100	94.059	Propithecus_coquereli
ENSLACG00000017890	SRP54	63	98.936	ENSPVAG00000010056	SRP54	82	98.936	Pteropus_vampyrus
ENSLACG00000017890	SRP54	100	95.635	ENSPNYG00000009717	srp54	100	95.635	Pundamilia_nyererei
ENSLACG00000017890	SRP54	100	95.833	ENSPNAG00000008544	srp54	100	95.833	Pygocentrus_nattereri
ENSLACG00000017890	SRP54	100	96.230	ENSRNOG00000032776	Srp54a	100	96.230	Rattus_norvegicus
ENSLACG00000017890	SRP54	100	96.032	ENSRROG00000041292	SRP54	100	96.032	Rhinopithecus_roxellana
ENSLACG00000017890	SRP54	86	52.154	YPR088C	SRP54	95	47.701	Saccharomyces_cerevisiae
ENSLACG00000017890	SRP54	94	95.781	ENSSBOG00000035145	SRP54	100	95.781	Saimiri_boliviensis_boliviensis
ENSLACG00000017890	SRP54	68	95.335	ENSSHAG00000000671	SRP54	100	95.335	Sarcophilus_harrisii
ENSLACG00000017890	SRP54	100	96.230	ENSSFOG00015013920	srp54	100	96.230	Scleropages_formosus
ENSLACG00000017890	SRP54	100	90.262	ENSSMAG00000002441	srp54	100	90.262	Scophthalmus_maximus
ENSLACG00000017890	SRP54	100	95.238	ENSSDUG00000018586	srp54	100	95.238	Seriola_dumerili
ENSLACG00000017890	SRP54	100	95.437	ENSSLDG00000010476	srp54	100	95.437	Seriola_lalandi_dorsalis
ENSLACG00000017890	SRP54	100	96.032	ENSSARG00000002744	SRP54	100	96.032	Sorex_araneus
ENSLACG00000017890	SRP54	100	96.032	ENSSPUG00000013101	SRP54	100	96.032	Sphenodon_punctatus
ENSLACG00000017890	SRP54	100	95.833	ENSSPAG00000002354	srp54	100	95.833	Stegastes_partitus
ENSLACG00000017890	SRP54	100	96.032	ENSSSCG00000001955	SRP54	100	96.032	Sus_scrofa
ENSLACG00000017890	SRP54	94	95.992	ENSTGUG00000011945	-	95	95.992	Taeniopygia_guttata
ENSLACG00000017890	SRP54	100	95.238	ENSTRUG00000007057	srp54	100	95.238	Takifugu_rubripes
ENSLACG00000017890	SRP54	100	94.643	ENSTNIG00000002589	srp54	100	94.643	Tetraodon_nigroviridis
ENSLACG00000017890	SRP54	89	87.025	ENSTBEG00000011409	SRP54	100	87.025	Tupaia_belangeri
ENSLACG00000017890	SRP54	100	86.706	ENSTTRG00000000928	SRP54	100	86.706	Tursiops_truncatus
ENSLACG00000017890	SRP54	52	96.565	ENSUAMG00000012385	SRP54	100	96.565	Ursus_americanus
ENSLACG00000017890	SRP54	100	96.032	ENSUMAG00000011234	SRP54	100	96.032	Ursus_maritimus
ENSLACG00000017890	SRP54	94	95.781	ENSVPAG00000005668	SRP54	100	95.781	Vicugna_pacos
ENSLACG00000017890	SRP54	100	96.032	ENSVVUG00000019962	SRP54	100	96.032	Vulpes_vulpes
ENSLACG00000017890	SRP54	100	81.262	ENSXETG00000012290	srp54	100	81.262	Xenopus_tropicalis
ENSLACG00000017890	SRP54	88	95.260	ENSXCOG00000004658	srp54	96	95.260	Xiphophorus_couchianus
ENSLACG00000017890	SRP54	100	95.635	ENSXMAG00000018315	srp54	100	95.635	Xiphophorus_maculatus