EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000018090 (Gene tree)
Gene ID: 102350327
Gene Symbol: SAFB
Alias: HET|SAFB1
Full Name: scaffold attachment factor B2
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Minus strand
Length: 27574 bases
Position: chrJH126613.1:2714387-2741960
Accession: 102350327
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000020583	RRM_5	PF13893.6	7.1e-07	1	1
ENSLACP00000020584	RRM_5	PF13893.6	7.8e-07	1	1
ENSLACP00000020583	RRM_1	PF00076.22	2.4e-13	1	1
ENSLACP00000020584	RRM_1	PF00076.22	2.5e-13	1	1
ENSLACP00000020583	SAP	PF02037.27	4e-10	1	1
ENSLACP00000020584	SAP	PF02037.27	4.2e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000020724	SAFB-202	2781	-	ENSLACP00000020584	926 (aa)	-	H3BFB3
ENSLACT00000020723	SAFB-201	4285	XM_005989892	ENSLACP00000020583	891 (aa)	XP_005989954	H3BFB2

Gene Model

Click here to download ENSLACG00000018090's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000018090's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000018090	SAFB	85	40.982	ENSLACG00000005234	SLTM	76	40.462

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000018090	SAFB	100	53.830	ENSG00000160633	SAFB	75	54.237	Homo_sapiens
ENSLACG00000018090	SAFB	97	49.119	ENSAPOG00000022508	safb	65	43.569	Acanthochromis_polyacanthus
ENSLACG00000018090	SAFB	68	51.398	ENSAMEG00000012254	SAFB	64	52.649	Ailuropoda_melanoleuca
ENSLACG00000018090	SAFB	97	48.136	ENSACIG00000006247	safb	70	43.115	Amphilophus_citrinellus
ENSLACG00000018090	SAFB	97	47.743	ENSAOCG00000006308	safb	69	45.156	Amphiprion_ocellaris
ENSLACG00000018090	SAFB	97	49.067	ENSAPEG00000023342	safb	65	43.062	Amphiprion_percula
ENSLACG00000018090	SAFB	98	48.176	ENSATEG00000004998	safb	66	44.745	Anabas_testudineus
ENSLACG00000018090	SAFB	91	57.565	ENSAPLG00000006355	-	100	57.937	Anas_platyrhynchos
ENSLACG00000018090	SAFB	96	54.031	ENSAPLG00000005780	-	64	53.158	Anas_platyrhynchos
ENSLACG00000018090	SAFB	81	50.529	ENSACAG00000016893	-	74	45.075	Anolis_carolinensis
ENSLACG00000018090	SAFB	100	54.412	ENSANAG00000028821	SAFB	64	52.606	Aotus_nancymaae
ENSLACG00000018090	SAFB	98	50.441	ENSACLG00000001926	safb	64	45.875	Astatotilapia_calliptera
ENSLACG00000018090	SAFB	96	52.285	ENSAMXG00000018154	safb	63	47.848	Astyanax_mexicanus
ENSLACG00000018090	SAFB	100	53.109	ENSBTAG00000007875	SAFB	65	51.954	Bos_taurus
ENSLACG00000018090	SAFB	81	57.383	ENSCJAG00000017081	SAFB	56	59.140	Callithrix_jacchus
ENSLACG00000018090	SAFB	68	52.484	ENSCAFG00000018803	SAFB	55	53.160	Canis_familiaris
ENSLACG00000018090	SAFB	99	54.536	ENSCAFG00020018943	SAFB	64	53.160	Canis_lupus_dingo
ENSLACG00000018090	SAFB	100	52.792	ENSCHIG00000007262	SAFB	86	50.769	Capra_hircus
ENSLACG00000018090	SAFB	83	48.259	ENSCAPG00000012121	SAFB	74	47.157	Cavia_aperea
ENSLACG00000018090	SAFB	66	49.533	ENSCPOG00000026322	SAFB	65	48.742	Cavia_porcellus
ENSLACG00000018090	SAFB	100	54.565	ENSCCAG00000020193	SAFB	64	52.606	Cebus_capucinus
ENSLACG00000018090	SAFB	100	54.097	ENSCATG00000029994	SAFB	64	53.323	Cercocebus_atys
ENSLACG00000018090	SAFB	100	54.097	ENSCSAG00000009949	SAFB	64	53.323	Chlorocebus_sabaeus
ENSLACG00000018090	SAFB	55	45.577	ENSCHOG00000003208	SAFB	64	42.388	Choloepus_hoffmanni
ENSLACG00000018090	SAFB	94	53.478	ENSCPBG00000010936	-	99	55.038	Chrysemys_picta_bellii
ENSLACG00000018090	SAFB	94	54.878	ENSCPBG00000010928	-	99	54.606	Chrysemys_picta_bellii
ENSLACG00000018090	SAFB	95	51.429	ENSCANG00000019754	-	63	52.269	Colobus_angolensis_palliatus
ENSLACG00000018090	SAFB	88	53.917	ENSCANG00000004774	-	96	53.485	Colobus_angolensis_palliatus
ENSLACG00000018090	SAFB	66	49.454	ENSCGRG00001002254	Safb	65	48.148	Cricetulus_griseus_chok1gshd
ENSLACG00000018090	SAFB	58	45.409	ENSCGRG00000011529	Safb	62	44.276	Cricetulus_griseus_crigri
ENSLACG00000018090	SAFB	96	47.059	ENSCSEG00000019870	safb	65	44.143	Cynoglossus_semilaevis
ENSLACG00000018090	SAFB	96	46.277	ENSCVAG00000002226	safb	64	41.087	Cyprinodon_variegatus
ENSLACG00000018090	SAFB	95	50.111	ENSDARG00000020467	safb	92	50.794	Danio_rerio
ENSLACG00000018090	SAFB	100	53.594	ENSDNOG00000015746	SAFB	79	51.300	Dasypus_novemcinctus
ENSLACG00000018090	SAFB	67	50.932	ENSDORG00000016200	Safb	66	50.955	Dipodomys_ordii
ENSLACG00000018090	SAFB	68	62.232	ENSETEG00000018679	SAFB	69	60.889	Echinops_telfairi
ENSLACG00000018090	SAFB	66	52.412	ENSEASG00005023019	SAFB	64	51.216	Equus_asinus_asinus
ENSLACG00000018090	SAFB	66	52.827	ENSECAG00000018659	SAFB	61	51.438	Equus_caballus
ENSLACG00000018090	SAFB	97	48.759	ENSELUG00000022327	safb	59	86.869	Esox_lucius
ENSLACG00000018090	SAFB	99	53.789	ENSFCAG00000011835	SAFB	64	51.629	Felis_catus
ENSLACG00000018090	SAFB	99	54.412	ENSFALG00000013882	-	58	52.152	Ficedula_albicollis
ENSLACG00000018090	SAFB	94	51.819	ENSFALG00000013881	-	99	56.326	Ficedula_albicollis
ENSLACG00000018090	SAFB	89	49.923	ENSFDAG00000020306	SAFB	94	52.532	Fukomys_damarensis
ENSLACG00000018090	SAFB	97	46.425	ENSFHEG00000004219	safb	64	41.766	Fundulus_heteroclitus
ENSLACG00000018090	SAFB	98	46.323	ENSGMOG00000014280	safb	64	42.581	Gadus_morhua
ENSLACG00000018090	SAFB	100	54.508	ENSGALG00000013365	-	66	52.063	Gallus_gallus
ENSLACG00000018090	SAFB	99	54.527	ENSGALG00000001948	-	97	56.468	Gallus_gallus
ENSLACG00000018090	SAFB	97	45.554	ENSGAFG00000016162	safb	66	38.818	Gambusia_affinis
ENSLACG00000018090	SAFB	98	47.363	ENSGACG00000011385	safb	66	43.042	Gasterosteus_aculeatus
ENSLACG00000018090	SAFB	94	55.027	ENSGAGG00000008424	-	100	55.227	Gopherus_agassizii
ENSLACG00000018090	SAFB	100	53.676	ENSGGOG00000015109	SAFB	64	59.420	Gorilla_gorilla
ENSLACG00000018090	SAFB	98	46.644	ENSHBUG00000009218	safb	69	43.377	Haplochromis_burtoni
ENSLACG00000018090	SAFB	66	51.501	ENSHGLG00000015883	SAFB	64	50.478	Heterocephalus_glaber_female
ENSLACG00000018090	SAFB	88	52.273	ENSHGLG00100004228	SAFB	94	50.469	Heterocephalus_glaber_male
ENSLACG00000018090	SAFB	94	42.647	ENSHCOG00000001705	safb	64	39.168	Hippocampus_comes
ENSLACG00000018090	SAFB	97	51.606	ENSIPUG00000024869	safb2	65	45.543	Ictalurus_punctatus
ENSLACG00000018090	SAFB	62	51.597	ENSSTOG00000002783	SAFB	65	50.594	Ictidomys_tridecemlineatus
ENSLACG00000018090	SAFB	66	50.314	ENSJJAG00000009021	Safb	66	48.287	Jaculus_jaculus
ENSLACG00000018090	SAFB	97	48.230	ENSKMAG00000022308	safb	65	43.134	Kryptolebias_marmoratus
ENSLACG00000018090	SAFB	98	49.143	ENSLBEG00000006015	safb	65	43.730	Labrus_bergylta
ENSLACG00000018090	SAFB	98	56.377	ENSLOCG00000003613	safb	98	55.471	Lepisosteus_oculatus
ENSLACG00000018090	SAFB	96	52.516	ENSLAFG00000003840	SAFB	64	51.702	Loxodonta_africana
ENSLACG00000018090	SAFB	100	54.355	ENSMFAG00000003885	SAFB	64	60.870	Macaca_fascicularis
ENSLACG00000018090	SAFB	100	54.517	ENSMMUG00000017970	SAFB	97	48.872	Macaca_mulatta
ENSLACG00000018090	SAFB	100	52.521	ENSMNEG00000035637	SAFB	64	60.870	Macaca_nemestrina
ENSLACG00000018090	SAFB	100	51.895	ENSMLEG00000038637	SAFB	64	60.870	Mandrillus_leucophaeus
ENSLACG00000018090	SAFB	98	49.193	ENSMAMG00000003357	safb	60	44.427	Mastacembelus_armatus
ENSLACG00000018090	SAFB	98	50.551	ENSMZEG00005009120	safb	66	45.110	Maylandia_zebra
ENSLACG00000018090	SAFB	99	52.854	ENSMGAG00000001101	-	62	52.281	Meleagris_gallopavo
ENSLACG00000018090	SAFB	87	55.650	ENSMGAG00000001051	-	96	54.945	Meleagris_gallopavo
ENSLACG00000018090	SAFB	85	49.359	ENSMICG00000046795	-	73	61.972	Microcebus_murinus
ENSLACG00000018090	SAFB	96	53.998	ENSMICG00000008739	-	64	52.435	Microcebus_murinus
ENSLACG00000018090	SAFB	66	48.670	ENSMOCG00000014040	Safb	65	47.196	Microtus_ochrogaster
ENSLACG00000018090	SAFB	100	54.346	ENSMODG00000001236	SAFB	64	52.724	Monodelphis_domestica
ENSLACG00000018090	SAFB	98	49.570	ENSMALG00000020330	safb	70	43.720	Monopterus_albus
ENSLACG00000018090	SAFB	65	49.048	MGP_CAROLIEiJ_G0021780	Safb	66	46.656	Mus_caroli
ENSLACG00000018090	SAFB	66	48.125	ENSMUSG00000071054	Safb	66	47.161	Mus_musculus
ENSLACG00000018090	SAFB	65	47.881	MGP_PahariEiJ_G0020769	Safb	73	54.430	Mus_pahari
ENSLACG00000018090	SAFB	68	51.708	ENSMPUG00000006123	SAFB	60	52.350	Mustela_putorius_furo
ENSLACG00000018090	SAFB	100	53.361	ENSMLUG00000001081	SAFB	64	51.303	Myotis_lucifugus
ENSLACG00000018090	SAFB	66	48.834	ENSNGAG00000019882	Safb	66	47.582	Nannospalax_galili
ENSLACG00000018090	SAFB	99	53.376	ENSNLEG00000013551	SAFB	67	53.223	Nomascus_leucogenys
ENSLACG00000018090	SAFB	60	50.624	ENSOPRG00000011561	-	67	49.733	Ochotona_princeps
ENSLACG00000018090	SAFB	66	50.786	ENSODEG00000014838	SAFB	64	50.647	Octodon_degus
ENSLACG00000018090	SAFB	98	49.411	ENSONIG00000002318	safb	66	44.392	Oreochromis_niloticus
ENSLACG00000018090	SAFB	93	48.481	ENSOCUG00000014628	SAFB	62	50.000	Oryctolagus_cuniculus
ENSLACG00000018090	SAFB	97	46.542	ENSORLG00000016989	safb	66	41.748	Oryzias_latipes
ENSLACG00000018090	SAFB	97	44.432	ENSORLG00020000404	safb	67	41.137	Oryzias_latipes_hni
ENSLACG00000018090	SAFB	97	47.091	ENSORLG00015010733	safb	66	42.233	Oryzias_latipes_hsok
ENSLACG00000018090	SAFB	98	47.014	ENSOMEG00000009066	safb	66	41.667	Oryzias_melastigma
ENSLACG00000018090	SAFB	66	52.419	ENSOGAG00000027769	SAFB	64	51.954	Otolemur_garnettii
ENSLACG00000018090	SAFB	81	49.541	ENSOARG00000007856	-	78	49.479	Ovis_aries
ENSLACG00000018090	SAFB	100	49.737	ENSOARG00000007662	-	65	51.994	Ovis_aries
ENSLACG00000018090	SAFB	100	53.830	ENSPPAG00000035129	SAFB	64	59.420	Pan_paniscus
ENSLACG00000018090	SAFB	99	53.789	ENSPPRG00000017197	SAFB	64	51.629	Panthera_pardus
ENSLACG00000018090	SAFB	100	53.830	ENSPTRG00000010335	SAFB	64	59.420	Pan_troglodytes
ENSLACG00000018090	SAFB	100	54.355	ENSPANG00000007770	SAFB	64	60.870	Papio_anubis
ENSLACG00000018090	SAFB	98	51.155	ENSPKIG00000009902	safb	67	46.296	Paramormyrops_kingsleyae
ENSLACG00000018090	SAFB	100	53.950	ENSPSIG00000011679	-	99	57.780	Pelodiscus_sinensis
ENSLACG00000018090	SAFB	99	55.212	ENSPSIG00000009367	-	63	54.927	Pelodiscus_sinensis
ENSLACG00000018090	SAFB	66	49.609	ENSPEMG00000020428	Safb	65	48.598	Peromyscus_maniculatus_bairdii
ENSLACG00000018090	SAFB	97	46.364	ENSPFOG00000007745	safb	72	41.452	Poecilia_formosa
ENSLACG00000018090	SAFB	97	44.493	ENSPLAG00000001614	safb	66	38.986	Poecilia_latipinna
ENSLACG00000018090	SAFB	97	46.433	ENSPMEG00000021023	safb	68	41.472	Poecilia_mexicana
ENSLACG00000018090	SAFB	97	45.363	ENSPREG00000012496	safb	65	41.379	Poecilia_reticulata
ENSLACG00000018090	SAFB	100	53.992	ENSPPYG00000009428	SAFB	64	53.223	Pongo_abelii
ENSLACG00000018090	SAFB	100	48.760	ENSPCAG00000006475	SAFB	64	46.353	Procavia_capensis
ENSLACG00000018090	SAFB	96	51.310	ENSPCOG00000014090	SAFB	64	52.435	Propithecus_coquereli
ENSLACG00000018090	SAFB	100	50.790	ENSPVAG00000004913	SAFB	87	49.186	Pteropus_vampyrus
ENSLACG00000018090	SAFB	97	51.209	ENSPNAG00000021838	safb	66	46.474	Pygocentrus_nattereri
ENSLACG00000018090	SAFB	66	48.442	ENSRNOG00000050543	Safb	66	47.132	Rattus_norvegicus
ENSLACG00000018090	SAFB	100	49.842	ENSRBIG00000042509	SAFB	64	59.420	Rhinopithecus_bieti
ENSLACG00000018090	SAFB	100	54.355	ENSRROG00000029278	SAFB	64	59.420	Rhinopithecus_roxellana
ENSLACG00000018090	SAFB	99	55.413	ENSSBOG00000026291	SAFB	64	52.951	Saimiri_boliviensis_boliviensis
ENSLACG00000018090	SAFB	98	52.687	ENSSFOG00015008156	safb	67	46.142	Scleropages_formosus
ENSLACG00000018090	SAFB	98	47.147	ENSSMAG00000009316	safb	65	43.131	Scophthalmus_maximus
ENSLACG00000018090	SAFB	98	48.451	ENSSDUG00000009652	safb	70	44.608	Seriola_dumerili
ENSLACG00000018090	SAFB	98	48.013	ENSSLDG00000001670	safb	65	43.981	Seriola_lalandi_dorsalis
ENSLACG00000018090	SAFB	62	50.515	ENSSARG00000010475	SAFB	64	50.177	Sorex_araneus
ENSLACG00000018090	SAFB	58	49.526	ENSSPUG00000009747	-	66	47.850	Sphenodon_punctatus
ENSLACG00000018090	SAFB	83	52.840	ENSSPUG00000009820	-	98	55.800	Sphenodon_punctatus
ENSLACG00000018090	SAFB	98	46.542	ENSSPAG00000015682	safb	85	42.950	Stegastes_partitus
ENSLACG00000018090	SAFB	100	52.648	ENSSSCG00000013522	SAFB	75	53.257	Sus_scrofa
ENSLACG00000018090	SAFB	91	55.257	ENSTGUG00000000489	-	96	58.382	Taeniopygia_guttata
ENSLACG00000018090	SAFB	97	47.903	ENSTRUG00000003567	safb	65	43.274	Takifugu_rubripes
ENSLACG00000018090	SAFB	90	44.196	ENSTNIG00000015470	safb	73	40.185	Tetraodon_nigroviridis
ENSLACG00000018090	SAFB	92	71.053	ENSTTRG00000013588	SAFB	56	71.053	Tursiops_truncatus
ENSLACG00000018090	SAFB	82	53.956	ENSUAMG00000024543	SAFB	60	48.214	Ursus_americanus
ENSLACG00000018090	SAFB	87	51.864	ENSUMAG00000009734	SAFB	89	51.993	Ursus_maritimus
ENSLACG00000018090	SAFB	73	60.714	ENSVPAG00000012043	SAFB	62	63.673	Vicugna_pacos
ENSLACG00000018090	SAFB	68	52.484	ENSVVUG00000013720	SAFB	55	53.160	Vulpes_vulpes
ENSLACG00000018090	SAFB	66	50.647	ENSXETG00000008755	safb	79	55.963	Xenopus_tropicalis
ENSLACG00000018090	SAFB	98	47.157	ENSXMAG00000003458	safb	65	41.206	Xiphophorus_maculatus