EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000018380 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Minus strand
Length: 2593 bases
Position: chrJH126600.1:3150975-3153567
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000020919	RVT_1	PF00078.27	4.2e-26	1	1
ENSLACP00000020920	RVT_1	PF00078.27	2.9e-24	1	1
ENSLACP00000020921	RNase_H	PF00075.24	2e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000021061	-	1548	-	ENSLACP00000020921	516 (aa)	-	H3BGA0
ENSLACT00000021060	-	1908	-	ENSLACP00000020920	636 (aa)	-	H3BG99
ENSLACT00000021059	-	2064	-	ENSLACP00000020919	688 (aa)	-	H3BG98

Gene Model

Click here to download ENSLACG00000018380's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000018380's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000018380	-	100	33.784	ENSLACG00000009011	-	88	37.708
ENSLACG00000018380	-	100	35.294	ENSLACG00000005007	-	99	38.022
ENSLACG00000018380	-	97	38.339	ENSLACG00000002665	-	80	38.679
ENSLACG00000018380	-	71	30.519	ENSLACG00000006151	-	63	30.519
ENSLACG00000018380	-	91	67.239	ENSLACG00000008366	-	99	67.239
ENSLACG00000018380	-	71	31.602	ENSLACG00000016441	-	50	31.602
ENSLACG00000018380	-	86	34.932	ENSLACG00000002512	-	100	34.790
ENSLACG00000018380	-	60	32.558	ENSLACG00000012109	-	75	32.558
ENSLACG00000018380	-	99	35.070	ENSLACG00000011272	-	94	35.070
ENSLACG00000018380	-	100	63.206	ENSLACG00000004343	-	83	63.050
ENSLACG00000018380	-	67	32.157	ENSLACG00000006413	-	67	32.157
ENSLACG00000018380	-	100	31.564	ENSLACG00000015558	-	96	31.564
ENSLACG00000018380	-	99	40.083	ENSLACG00000016980	-	75	33.957
ENSLACG00000018380	-	64	31.280	ENSLACG00000015186	-	58	31.754

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000018380	-	79	30.000	ENSATEG00000016298	-	52	30.380	Anabas_testudineus
ENSLACG00000018380	-	71	33.617	ENSACLG00000024556	-	59	33.617	Astatotilapia_calliptera
ENSLACG00000018380	-	81	31.308	ENSACLG00000013947	-	50	31.336	Astatotilapia_calliptera
ENSLACG00000018380	-	78	32.020	ENSAMXG00000033197	-	57	32.020	Astyanax_mexicanus
ENSLACG00000018380	-	67	32.203	ENSAMXG00000043821	-	61	31.308	Astyanax_mexicanus
ENSLACG00000018380	-	79	32.124	ENSAMXG00000035923	-	64	32.174	Astyanax_mexicanus
ENSLACG00000018380	-	86	30.153	ENSAMXG00000036113	-	56	30.153	Astyanax_mexicanus
ENSLACG00000018380	-	76	30.412	ENSAMXG00000041896	-	65	31.628	Astyanax_mexicanus
ENSLACG00000018380	-	81	33.469	ENSCVAG00000020907	-	74	34.127	Cyprinodon_variegatus
ENSLACG00000018380	-	63	34.211	ENSGALG00000044734	-	58	34.247	Gallus_gallus
ENSLACG00000018380	-	66	36.145	ENSGAGG00000002613	-	61	36.145	Gopherus_agassizii
ENSLACG00000018380	-	85	31.624	ENSHCOG00000012267	-	50	31.624	Hippocampus_comes
ENSLACG00000018380	-	92	32.229	ENSLOCG00000009957	-	73	32.229	Lepisosteus_oculatus
ENSLACG00000018380	-	79	35.714	ENSMAMG00000021634	-	59	35.714	Mastacembelus_armatus
ENSLACG00000018380	-	83	32.751	ENSORLG00000025397	-	56	32.751	Oryzias_latipes
ENSLACG00000018380	-	77	32.579	ENSORLG00000029184	-	65	30.159	Oryzias_latipes
ENSLACG00000018380	-	83	30.159	ENSORLG00000025268	-	71	30.159	Oryzias_latipes
ENSLACG00000018380	-	74	31.383	ENSORLG00000024878	-	52	31.383	Oryzias_latipes
ENSLACG00000018380	-	78	30.594	ENSORLG00020009084	-	54	30.594	Oryzias_latipes_hni
ENSLACG00000018380	-	86	33.197	ENSORLG00020017608	-	55	33.197	Oryzias_latipes_hni
ENSLACG00000018380	-	76	33.486	ENSORLG00020018561	-	50	33.188	Oryzias_latipes_hni
ENSLACG00000018380	-	81	33.735	ENSORLG00015000379	-	73	34.100	Oryzias_latipes_hsok
ENSLACG00000018380	-	78	31.053	ENSORLG00015012565	-	52	30.294	Oryzias_latipes_hsok
ENSLACG00000018380	-	53	30.334	ENSORLG00015013369	-	50	30.334	Oryzias_latipes_hsok
ENSLACG00000018380	-	79	32.579	ENSORLG00015022127	-	52	32.579	Oryzias_latipes_hsok
ENSLACG00000018380	-	68	34.586	ENSPKIG00000012990	-	70	34.586	Paramormyrops_kingsleyae
ENSLACG00000018380	-	56	39.241	ENSPSIG00000001614	-	55	39.241	Pelodiscus_sinensis
ENSLACG00000018380	-	56	32.249	ENSPSIG00000001136	-	65	37.461	Pelodiscus_sinensis
ENSLACG00000018380	-	84	30.508	ENSPREG00000006496	-	79	30.508	Poecilia_reticulata
ENSLACG00000018380	-	79	34.821	ENSPREG00000006122	-	53	34.821	Poecilia_reticulata
ENSLACG00000018380	-	83	30.131	ENSPREG00000006052	-	51	30.131	Poecilia_reticulata
ENSLACG00000018380	-	83	34.884	ENSSLDG00000003503	-	53	34.884	Seriola_lalandi_dorsalis
ENSLACG00000018380	-	67	30.660	ENSTRUG00000021236	-	71	30.660	Takifugu_rubripes
ENSLACG00000018380	-	99	30.882	ENSTNIG00000006817	-	61	30.882	Tetraodon_nigroviridis
ENSLACG00000018380	-	88	30.769	ENSXMAG00000023370	-	55	30.769	Xiphophorus_maculatus