EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLACG00000018470 (Gene tree)
Gene ID: 102349510
Gene Symbol: -
Alias: -
Full Name: cleavage and polyadenylation specific factor 4 like
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Plus strand
Length: 11724 bases
Position: chrJH126581.1:3374803-3386526
Accession: 102349510
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000021021	zf-CCCH	PF00642.24	1.3e-18	1	2
ENSLACP00000021021	zf-CCCH	PF00642.24	1.3e-18	2	2
ENSLACP00000021021	zf-CCHC	PF00098.23	0.00014	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000021161	-	738	XM_005988058	ENSLACP00000021021	245 (aa)	XP_005988120	H3BGK0

Gene Model

Click here to download ENSLACG00000018470's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000018470's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLACG00000018470	-	100	61.255	ENSLACG00000010938	CPSF4	100	61.255

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000018470	-	100	64.490	ENSG00000160917	CPSF4	100	84.956	Homo_sapiens
ENSLACG00000018470	-	64	47.486	ENSAPOG00000004921	cpsf4	100	47.486	Acanthochromis_polyacanthus
ENSLACG00000018470	-	100	60.741	ENSAMEG00000006252	CPSF4	100	60.741	Ailuropoda_melanoleuca
ENSLACG00000018470	-	100	62.857	ENSACIG00000009248	cpsf4	100	63.855	Amphilophus_citrinellus
ENSLACG00000018470	-	100	59.551	ENSAOCG00000019616	cpsf4	100	59.551	Amphiprion_ocellaris
ENSLACG00000018470	-	100	59.551	ENSAPEG00000011679	cpsf4	100	59.551	Amphiprion_percula
ENSLACG00000018470	-	100	61.508	ENSATEG00000007010	cpsf4	100	61.508	Anabas_testudineus
ENSLACG00000018470	-	100	60.370	ENSACAG00000012941	CPSF4	89	60.370	Anolis_carolinensis
ENSLACG00000018470	-	100	60.741	ENSANAG00000021360	CPSF4	100	60.741	Aotus_nancymaae
ENSLACG00000018470	-	100	61.224	ENSACLG00000010374	cpsf4	100	61.224	Astatotilapia_calliptera
ENSLACG00000018470	-	100	60.148	ENSAMXG00000031647	cpsf4	100	60.148	Astyanax_mexicanus
ENSLACG00000018470	-	100	64.453	ENSBTAG00000002090	CPSF4	100	67.073	Bos_taurus
ENSLACG00000018470	-	100	61.654	ENSCJAG00000015826	CPSF4	100	61.654	Callithrix_jacchus
ENSLACG00000018470	-	100	60.741	ENSCAFG00000015036	CPSF4	99	73.373	Canis_familiaris
ENSLACG00000018470	-	100	57.037	ENSCAFG00020014462	CPSF4	100	57.037	Canis_lupus_dingo
ENSLACG00000018470	-	100	61.111	ENSCHIG00000014313	CPSF4	100	61.111	Capra_hircus
ENSLACG00000018470	-	88	57.604	ENSTSYG00000008195	-	99	59.471	Carlito_syrichta
ENSLACG00000018470	-	100	64.898	ENSTSYG00000005712	-	100	66.260	Carlito_syrichta
ENSLACG00000018470	-	100	56.911	ENSTSYG00000014604	-	100	59.109	Carlito_syrichta
ENSLACG00000018470	-	79	59.817	ENSCAPG00000013881	CPSF4	87	59.817	Cavia_aperea
ENSLACG00000018470	-	100	64.082	ENSCPOG00000001783	CPSF4	100	65.854	Cavia_porcellus
ENSLACG00000018470	-	100	60.741	ENSCCAG00000028291	CPSF4	100	60.741	Cebus_capucinus
ENSLACG00000018470	-	100	64.228	ENSCATG00000038440	CPSF4	100	64.228	Cercocebus_atys
ENSLACG00000018470	-	100	60.741	ENSCLAG00000007050	CPSF4	100	60.741	Chinchilla_lanigera
ENSLACG00000018470	-	100	60.741	ENSCSAG00000017795	CPSF4	100	60.741	Chlorocebus_sabaeus
ENSLACG00000018470	-	68	81.437	ENSCPBG00000010269	-	100	81.437	Chrysemys_picta_bellii
ENSLACG00000018470	-	78	58.986	ENSCPBG00000020869	CPSF4	100	58.986	Chrysemys_picta_bellii
ENSLACG00000018470	-	96	54.118	ENSCING00000021080	-	97	53.725	Ciona_intestinalis
ENSLACG00000018470	-	96	49.822	ENSCSAVG00000011469	-	97	49.822	Ciona_savignyi
ENSLACG00000018470	-	100	64.777	ENSCANG00000019384	CPSF4	100	64.777	Colobus_angolensis_palliatus
ENSLACG00000018470	-	100	64.082	ENSCGRG00001024184	Cpsf4	100	65.854	Cricetulus_griseus_chok1gshd
ENSLACG00000018470	-	100	60.741	ENSCGRG00000013892	Cpsf4	100	60.741	Cricetulus_griseus_crigri
ENSLACG00000018470	-	100	59.925	ENSCSEG00000019055	cpsf4	100	59.925	Cynoglossus_semilaevis
ENSLACG00000018470	-	100	59.023	ENSCVAG00000016528	cpsf4	100	59.023	Cyprinodon_variegatus
ENSLACG00000018470	-	100	58.088	ENSDARG00000020217	cpsf4	100	58.696	Danio_rerio
ENSLACG00000018470	-	100	60.741	ENSDNOG00000006344	CPSF4	100	60.741	Dasypus_novemcinctus
ENSLACG00000018470	-	78	59.908	ENSDORG00000000742	Cpsf4	99	59.908	Dipodomys_ordii
ENSLACG00000018470	-	99	47.241	FBgn0015621	Clp	98	47.241	Drosophila_melanogaster
ENSLACG00000018470	-	68	77.711	ENSETEG00000002608	CPSF4	61	77.711	Echinops_telfairi
ENSLACG00000018470	-	99	62.295	ENSEBUG00000012552	cpsf4	98	62.295	Eptatretus_burgeri
ENSLACG00000018470	-	100	64.082	ENSEASG00005002487	CPSF4	100	65.854	Equus_asinus_asinus
ENSLACG00000018470	-	100	60.741	ENSECAG00000007525	CPSF4	100	60.741	Equus_caballus
ENSLACG00000018470	-	100	59.707	ENSELUG00000011481	cpsf4	100	59.489	Esox_lucius
ENSLACG00000018470	-	100	60.741	ENSFCAG00000015070	CPSF4	100	60.741	Felis_catus
ENSLACG00000018470	-	100	65.306	ENSFALG00000013799	CPSF4	100	65.306	Ficedula_albicollis
ENSLACG00000018470	-	68	55.233	ENSFALG00000012906	-	100	55.233	Ficedula_albicollis
ENSLACG00000018470	-	89	59.836	ENSFDAG00000014092	CPSF4	100	59.836	Fukomys_damarensis
ENSLACG00000018470	-	100	59.398	ENSFHEG00000010880	cpsf4	100	59.398	Fundulus_heteroclitus
ENSLACG00000018470	-	100	61.004	ENSGMOG00000002330	cpsf4	100	61.004	Gadus_morhua
ENSLACG00000018470	-	100	37.755	ENSGALG00000004441	-	100	37.755	Gallus_gallus
ENSLACG00000018470	-	100	65.306	ENSGALG00000004714	CPSF4	100	65.306	Gallus_gallus
ENSLACG00000018470	-	100	59.623	ENSGAFG00000010580	cpsf4	100	59.623	Gambusia_affinis
ENSLACG00000018470	-	100	60.000	ENSGACG00000007792	cpsf4	100	60.000	Gasterosteus_aculeatus
ENSLACG00000018470	-	100	60.370	ENSGAGG00000021835	CPSF4	100	60.370	Gopherus_agassizii
ENSLACG00000018470	-	68	80.120	ENSGAGG00000020579	-	92	80.120	Gopherus_agassizii
ENSLACG00000018470	-	100	60.741	ENSGGOG00000015131	CPSF4	100	60.741	Gorilla_gorilla
ENSLACG00000018470	-	100	60.150	ENSHBUG00000013699	cpsf4	100	60.150	Haplochromis_burtoni
ENSLACG00000018470	-	100	59.926	ENSHGLG00000017150	CPSF4	100	60.662	Heterocephalus_glaber_female
ENSLACG00000018470	-	70	55.814	ENSHGLG00100017302	-	100	44.898	Heterocephalus_glaber_male
ENSLACG00000018470	-	86	57.384	ENSHGLG00100009215	-	100	58.228	Heterocephalus_glaber_male
ENSLACG00000018470	-	100	59.774	ENSHCOG00000004397	cpsf4	100	59.774	Hippocampus_comes
ENSLACG00000018470	-	100	58.088	ENSIPUG00000017147	cpsf4	100	58.456	Ictalurus_punctatus
ENSLACG00000018470	-	100	63.672	ENSSTOG00000001688	CPSF4	100	64.898	Ictidomys_tridecemlineatus
ENSLACG00000018470	-	100	60.741	ENSJJAG00000019426	Cpsf4	100	60.741	Jaculus_jaculus
ENSLACG00000018470	-	100	59.774	ENSKMAG00000015642	cpsf4	100	59.774	Kryptolebias_marmoratus
ENSLACG00000018470	-	100	60.370	ENSLOCG00000004814	cpsf4	100	59.630	Lepisosteus_oculatus
ENSLACG00000018470	-	100	60.741	ENSLAFG00000000159	CPSF4	100	60.741	Loxodonta_africana
ENSLACG00000018470	-	100	64.777	ENSMFAG00000001462	CPSF4	100	64.777	Macaca_fascicularis
ENSLACG00000018470	-	100	60.741	ENSMMUG00000019191	CPSF4	100	60.741	Macaca_mulatta
ENSLACG00000018470	-	100	64.777	ENSMNEG00000032306	CPSF4	100	64.777	Macaca_nemestrina
ENSLACG00000018470	-	100	64.228	ENSMLEG00000034721	CPSF4	100	64.228	Mandrillus_leucophaeus
ENSLACG00000018470	-	100	59.701	ENSMAMG00000006244	cpsf4	100	59.701	Mastacembelus_armatus
ENSLACG00000018470	-	100	60.150	ENSMZEG00005007515	cpsf4	100	60.150	Maylandia_zebra
ENSLACG00000018470	-	86	63.981	ENSMGAG00000004235	CPSF4	100	63.981	Meleagris_gallopavo
ENSLACG00000018470	-	100	60.741	ENSMAUG00000021253	Cpsf4	100	60.741	Mesocricetus_auratus
ENSLACG00000018470	-	100	61.111	ENSMICG00000017429	CPSF4	100	61.111	Microcebus_murinus
ENSLACG00000018470	-	100	60.741	ENSMOCG00000014901	Cpsf4	100	60.741	Microtus_ochrogaster
ENSLACG00000018470	-	100	58.801	ENSMMOG00000001813	cpsf4	95	71.084	Mola_mola
ENSLACG00000018470	-	100	60.370	ENSMODG00000001367	CPSF4	100	60.370	Monodelphis_domestica
ENSLACG00000018470	-	100	60.448	ENSMALG00000012611	cpsf4	100	60.448	Monopterus_albus
ENSLACG00000018470	-	100	64.082	MGP_CAROLIEiJ_G0028012	Cpsf4	100	65.854	Mus_caroli
ENSLACG00000018470	-	100	64.082	ENSMUSG00000029625	Cpsf4	100	65.854	Mus_musculus
ENSLACG00000018470	-	100	64.082	MGP_PahariEiJ_G0024581	Cpsf4	100	65.854	Mus_pahari
ENSLACG00000018470	-	100	64.082	MGP_SPRETEiJ_G0029013	Cpsf4	100	65.447	Mus_spretus
ENSLACG00000018470	-	100	60.741	ENSMPUG00000016508	CPSF4	100	60.741	Mustela_putorius_furo
ENSLACG00000018470	-	86	63.063	ENSMLUG00000010980	CPSF4	100	63.507	Myotis_lucifugus
ENSLACG00000018470	-	100	60.741	ENSNGAG00000001567	Cpsf4	100	60.741	Nannospalax_galili
ENSLACG00000018470	-	89	60.417	ENSNBRG00000003943	cpsf4	97	60.417	Neolamprologus_brichardi
ENSLACG00000018470	-	100	64.490	ENSNLEG00000011074	CPSF4	100	64.490	Nomascus_leucogenys
ENSLACG00000018470	-	100	60.370	ENSMEUG00000006955	CPSF4	100	60.370	Notamacropus_eugenii
ENSLACG00000018470	-	100	60.370	ENSOPRG00000013663	CPSF4	100	60.370	Ochotona_princeps
ENSLACG00000018470	-	100	49.603	ENSODEG00000009779	-	100	49.603	Octodon_degus
ENSLACG00000018470	-	100	60.741	ENSODEG00000011181	-	100	60.741	Octodon_degus
ENSLACG00000018470	-	98	55.785	ENSODEG00000018283	-	91	56.198	Octodon_degus
ENSLACG00000018470	-	100	60.526	ENSONIG00000008495	cpsf4	100	60.526	Oreochromis_niloticus
ENSLACG00000018470	-	86	59.149	ENSOANG00000007729	CPSF4	100	59.149	Ornithorhynchus_anatinus
ENSLACG00000018470	-	100	53.004	ENSOANG00000009568	-	100	53.004	Ornithorhynchus_anatinus
ENSLACG00000018470	-	100	60.741	ENSOCUG00000002437	CPSF4	70	60.741	Oryctolagus_cuniculus
ENSLACG00000018470	-	100	60.150	ENSORLG00000022798	cpsf4	100	60.150	Oryzias_latipes
ENSLACG00000018470	-	100	60.150	ENSORLG00020008548	cpsf4	100	60.150	Oryzias_latipes_hni
ENSLACG00000018470	-	100	59.774	ENSORLG00015019575	cpsf4	100	59.774	Oryzias_latipes_hsok
ENSLACG00000018470	-	100	59.398	ENSOMEG00000005176	cpsf4	100	59.398	Oryzias_melastigma
ENSLACG00000018470	-	100	60.741	ENSOGAG00000010884	CPSF4	100	60.741	Otolemur_garnettii
ENSLACG00000018470	-	100	54.745	ENSOARG00000018668	CPSF4	100	54.745	Ovis_aries
ENSLACG00000018470	-	100	60.741	ENSPPAG00000043355	CPSF4	100	60.741	Pan_paniscus
ENSLACG00000018470	-	100	60.741	ENSPPRG00000003134	CPSF4	100	60.741	Panthera_pardus
ENSLACG00000018470	-	89	60.494	ENSPTIG00000005604	CPSF4	90	60.494	Panthera_tigris_altaica
ENSLACG00000018470	-	100	60.741	ENSPTRG00000019453	CPSF4	100	60.741	Pan_troglodytes
ENSLACG00000018470	-	100	64.777	ENSPANG00000023123	CPSF4	100	64.777	Papio_anubis
ENSLACG00000018470	-	100	58.182	ENSPKIG00000014278	cpsf4	100	58.182	Paramormyrops_kingsleyae
ENSLACG00000018470	-	79	63.918	ENSPSIG00000018198	-	100	63.918	Pelodiscus_sinensis
ENSLACG00000018470	-	78	58.986	ENSPSIG00000011229	CPSF4	100	58.986	Pelodiscus_sinensis
ENSLACG00000018470	-	100	60.000	ENSPMGG00000017735	cpsf4	100	60.000	Periophthalmus_magnuspinnatus
ENSLACG00000018470	-	100	60.741	ENSPEMG00000004508	Cpsf4	100	60.741	Peromyscus_maniculatus_bairdii
ENSLACG00000018470	-	100	60.370	ENSPCIG00000024776	CPSF4	100	60.370	Phascolarctos_cinereus
ENSLACG00000018470	-	100	59.623	ENSPFOG00000014912	cpsf4	100	59.623	Poecilia_formosa
ENSLACG00000018470	-	100	63.052	ENSPLAG00000009599	cpsf4	100	63.052	Poecilia_latipinna
ENSLACG00000018470	-	100	59.623	ENSPMEG00000009790	cpsf4	100	59.623	Poecilia_mexicana
ENSLACG00000018470	-	100	60.456	ENSPREG00000018166	cpsf4	100	60.456	Poecilia_reticulata
ENSLACG00000018470	-	86	59.149	ENSPPYG00000017378	CPSF4	100	59.149	Pongo_abelii
ENSLACG00000018470	-	100	60.370	ENSPCAG00000001892	CPSF4	100	60.370	Procavia_capensis
ENSLACG00000018470	-	100	61.111	ENSPCOG00000012771	CPSF4	100	61.111	Propithecus_coquereli
ENSLACG00000018470	-	100	56.667	ENSPVAG00000007531	CPSF4	100	56.667	Pteropus_vampyrus
ENSLACG00000018470	-	100	60.150	ENSPNYG00000018559	cpsf4	100	60.150	Pundamilia_nyererei
ENSLACG00000018470	-	100	61.397	ENSPNAG00000003736	cpsf4	100	61.397	Pygocentrus_nattereri
ENSLACG00000018470	-	100	63.672	ENSRNOG00000000985	Cpsf4	100	64.898	Rattus_norvegicus
ENSLACG00000018470	-	86	59.574	ENSRBIG00000033886	CPSF4	100	59.574	Rhinopithecus_bieti
ENSLACG00000018470	-	100	64.490	ENSRROG00000040431	CPSF4	100	64.490	Rhinopithecus_roxellana
ENSLACG00000018470	-	100	60.741	ENSSBOG00000020493	CPSF4	100	64.583	Saimiri_boliviensis_boliviensis
ENSLACG00000018470	-	100	60.370	ENSSHAG00000011533	CPSF4	100	60.370	Sarcophilus_harrisii
ENSLACG00000018470	-	100	56.786	ENSSFOG00015007883	cpsf4	100	58.123	Scleropages_formosus
ENSLACG00000018470	-	100	62.857	ENSSMAG00000006374	cpsf4	100	62.857	Scophthalmus_maximus
ENSLACG00000018470	-	100	59.701	ENSSDUG00000018887	cpsf4	100	59.701	Seriola_dumerili
ENSLACG00000018470	-	100	59.701	ENSSLDG00000019078	cpsf4	100	59.701	Seriola_lalandi_dorsalis
ENSLACG00000018470	-	86	59.574	ENSSARG00000012416	CPSF4	100	59.574	Sorex_araneus
ENSLACG00000018470	-	97	61.765	ENSSPUG00000014803	-	99	61.765	Sphenodon_punctatus
ENSLACG00000018470	-	100	59.854	ENSSPUG00000003549	CPSF4	100	59.854	Sphenodon_punctatus
ENSLACG00000018470	-	100	63.673	ENSSPAG00000006174	cpsf4	100	63.673	Stegastes_partitus
ENSLACG00000018470	-	100	64.082	ENSSSCG00000026896	CPSF4	100	65.447	Sus_scrofa
ENSLACG00000018470	-	100	64.777	ENSTGUG00000007552	CPSF4	100	64.777	Taeniopygia_guttata
ENSLACG00000018470	-	100	60.000	ENSTRUG00000024220	cpsf4	100	60.000	Takifugu_rubripes
ENSLACG00000018470	-	100	60.000	ENSTNIG00000006265	cpsf4	100	60.000	Tetraodon_nigroviridis
ENSLACG00000018470	-	86	54.894	ENSTBEG00000011406	CPSF4	100	55.274	Tupaia_belangeri
ENSLACG00000018470	-	70	77.907	ENSTTRG00000003007	CPSF4	64	77.907	Tursiops_truncatus
ENSLACG00000018470	-	93	62.343	ENSUAMG00000008051	CPSF4	85	65.022	Ursus_americanus
ENSLACG00000018470	-	100	63.672	ENSUMAG00000009474	CPSF4	100	64.898	Ursus_maritimus
ENSLACG00000018470	-	100	64.082	ENSVVUG00000008824	CPSF4	100	65.854	Vulpes_vulpes
ENSLACG00000018470	-	100	59.707	ENSXETG00000004641	cpsf4l	100	59.707	Xenopus_tropicalis
ENSLACG00000018470	-	100	57.857	ENSXETG00000009892	cpsf4	100	57.348	Xenopus_tropicalis
ENSLACG00000018470	-	100	59.623	ENSXCOG00000016040	cpsf4	100	59.623	Xiphophorus_couchianus
ENSLACG00000018470	-	100	59.623	ENSXMAG00000024670	cpsf4	100	59.623	Xiphophorus_maculatus