EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSLACG00000018916 (Gene tree)
Gene ID: 102355531
Gene Symbol: SBDS
Alias: CGI-97|FLJ10917|SDS|SWDS
Full Name: SBDS%2C ribosome maturation factor
Gene Type: protein_coding
Species: Latimeria_chalumnae
Status: putative
Strand: Minus strand
Length: 5407 bases
Position: chrJH126574.1:5291798-5297204
Accession: 102355531
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLACP00000021527	SBDS	PF01172.18	9.2e-12	1	1
ENSLACP00000021527	SBDS_C	PF09377.10	6.1e-39	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLACT00000021668	SBDS-201	842	XM_005987562	ENSLACP00000021527	246 (aa)	-	H3BI06

Gene Model

Click here to download ENSLACG00000018916's gene model file

Pathways

Pathway ID	Pathway Name	Source
lcm03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000018916's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLACG00000018916	SBDS	100	70.472	ENSG00000126524	SBDS	100	70.472	Homo_sapiens
ENSLACG00000018916	SBDS	99	74.308	ENSAPOG00000014285	sbds	100	74.308	Acanthochromis_polyacanthus
ENSLACG00000018916	SBDS	100	69.685	ENSAMEG00000018167	SBDS	100	69.685	Ailuropoda_melanoleuca
ENSLACG00000018916	SBDS	99	73.438	ENSACIG00000007308	sbds	100	73.438	Amphilophus_citrinellus
ENSLACG00000018916	SBDS	99	75.099	ENSAOCG00000016770	sbds	100	75.099	Amphiprion_ocellaris
ENSLACG00000018916	SBDS	99	74.704	ENSAPEG00000015897	sbds	100	74.704	Amphiprion_percula
ENSLACG00000018916	SBDS	99	75.099	ENSATEG00000006901	sbds	100	75.099	Anabas_testudineus
ENSLACG00000018916	SBDS	68	80.952	ENSANAG00000037501	-	81	80.952	Aotus_nancymaae
ENSLACG00000018916	SBDS	92	66.522	ENSANAG00000024342	-	97	66.522	Aotus_nancymaae
ENSLACG00000018916	SBDS	99	74.308	ENSACLG00000018750	sbds	100	74.308	Astatotilapia_calliptera
ENSLACG00000018916	SBDS	100	74.409	ENSAMXG00000005361	sbds	100	74.409	Astyanax_mexicanus
ENSLACG00000018916	SBDS	100	70.472	ENSBTAG00000004051	SBDS	100	70.472	Bos_taurus
ENSLACG00000018916	SBDS	98	48.235	WBGene00021063	sbds-1	97	48.235	Caenorhabditis_elegans
ENSLACG00000018916	SBDS	100	70.472	ENSCJAG00000041007	SBDS	100	70.472	Callithrix_jacchus
ENSLACG00000018916	SBDS	100	68.605	ENSCAFG00000010797	SBDS	100	67.969	Canis_familiaris
ENSLACG00000018916	SBDS	100	69.685	ENSCAFG00020005357	SBDS	100	69.685	Canis_lupus_dingo
ENSLACG00000018916	SBDS	100	70.472	ENSCHIG00000026854	SBDS	100	70.472	Capra_hircus
ENSLACG00000018916	SBDS	100	70.472	ENSTSYG00000033822	SBDS	100	70.472	Carlito_syrichta
ENSLACG00000018916	SBDS	67	82.317	ENSCAPG00000006634	SBDS	100	82.317	Cavia_aperea
ENSLACG00000018916	SBDS	100	70.472	ENSCPOG00000036143	SBDS	100	70.472	Cavia_porcellus
ENSLACG00000018916	SBDS	100	70.472	ENSCCAG00000020671	SBDS	100	70.472	Cebus_capucinus
ENSLACG00000018916	SBDS	100	70.472	ENSCATG00000039026	SBDS	100	70.472	Cercocebus_atys
ENSLACG00000018916	SBDS	99	54.918	ENSCLAG00000002113	-	99	54.918	Chinchilla_lanigera
ENSLACG00000018916	SBDS	100	70.866	ENSCLAG00000005721	-	100	70.866	Chinchilla_lanigera
ENSLACG00000018916	SBDS	100	70.472	ENSCSAG00000018275	SBDS	100	70.472	Chlorocebus_sabaeus
ENSLACG00000018916	SBDS	100	65.748	ENSCHOG00000003795	SBDS	100	65.748	Choloepus_hoffmanni
ENSLACG00000018916	SBDS	100	74.803	ENSCPBG00000014893	SBDS	100	74.803	Chrysemys_picta_bellii
ENSLACG00000018916	SBDS	99	57.812	ENSCSAVG00000011811	-	99	57.812	Ciona_savignyi
ENSLACG00000018916	SBDS	100	70.079	ENSCANG00000032368	SBDS	100	70.079	Colobus_angolensis_palliatus
ENSLACG00000018916	SBDS	67	82.317	ENSCGRG00001019886	Sbds	100	82.317	Cricetulus_griseus_chok1gshd
ENSLACG00000018916	SBDS	68	80.952	ENSCGRG00000009211	Sbds	81	80.952	Cricetulus_griseus_crigri
ENSLACG00000018916	SBDS	99	74.704	ENSCSEG00000005798	sbds	100	74.704	Cynoglossus_semilaevis
ENSLACG00000018916	SBDS	99	71.146	ENSCVAG00000001053	sbds	100	71.146	Cyprinodon_variegatus
ENSLACG00000018916	SBDS	100	76.378	ENSDARG00000027803	sbds	100	76.378	Danio_rerio
ENSLACG00000018916	SBDS	100	70.079	ENSDNOG00000041174	SBDS	100	70.079	Dasypus_novemcinctus
ENSLACG00000018916	SBDS	100	71.654	ENSDORG00000026218	Sbds	100	71.654	Dipodomys_ordii
ENSLACG00000018916	SBDS	90	49.576	FBgn0035714	CG8549	98	50.980	Drosophila_melanogaster
ENSLACG00000018916	SBDS	93	50.000	ENSEBUG00000015780	sbds	100	50.000	Eptatretus_burgeri
ENSLACG00000018916	SBDS	100	70.472	ENSEASG00005008821	SBDS	100	70.472	Equus_asinus_asinus
ENSLACG00000018916	SBDS	100	70.472	ENSECAG00000008202	SBDS	100	70.472	Equus_caballus
ENSLACG00000018916	SBDS	83	64.904	ENSEEUG00000004768	SBDS	100	64.904	Erinaceus_europaeus
ENSLACG00000018916	SBDS	100	74.603	ENSELUG00000008382	sbds	100	74.603	Esox_lucius
ENSLACG00000018916	SBDS	100	70.079	ENSFCAG00000022142	SBDS	100	70.079	Felis_catus
ENSLACG00000018916	SBDS	100	74.409	ENSFALG00000013808	SBDS	100	74.409	Ficedula_albicollis
ENSLACG00000018916	SBDS	100	70.472	ENSFDAG00000018947	-	100	70.472	Fukomys_damarensis
ENSLACG00000018916	SBDS	99	70.751	ENSFHEG00000000708	sbds	100	70.751	Fundulus_heteroclitus
ENSLACG00000018916	SBDS	100	70.472	ENSGMOG00000018356	sbds	99	70.472	Gadus_morhua
ENSLACG00000018916	SBDS	100	73.622	ENSGALG00000027989	SBDS	100	73.622	Gallus_gallus
ENSLACG00000018916	SBDS	92	67.521	ENSGAFG00000014204	sbds	100	67.521	Gambusia_affinis
ENSLACG00000018916	SBDS	99	69.960	ENSGACG00000012697	sbds	100	69.960	Gasterosteus_aculeatus
ENSLACG00000018916	SBDS	85	72.936	ENSGAGG00000022402	SBDS	100	72.936	Gopherus_agassizii
ENSLACG00000018916	SBDS	96	63.291	ENSGGOG00000040023	-	92	63.291	Gorilla_gorilla
ENSLACG00000018916	SBDS	99	74.308	ENSHBUG00000002660	sbds	100	74.308	Haplochromis_burtoni
ENSLACG00000018916	SBDS	100	68.898	ENSHGLG00000009671	SBDS	100	68.898	Heterocephalus_glaber_female
ENSLACG00000018916	SBDS	100	68.898	ENSHGLG00100011332	SBDS	100	68.898	Heterocephalus_glaber_male
ENSLACG00000018916	SBDS	99	69.565	ENSHCOG00000018606	sbds	100	69.565	Hippocampus_comes
ENSLACG00000018916	SBDS	100	74.803	ENSIPUG00000006536	sbds	100	74.803	Ictalurus_punctatus
ENSLACG00000018916	SBDS	100	68.110	ENSJJAG00000012033	-	100	68.110	Jaculus_jaculus
ENSLACG00000018916	SBDS	100	51.220	ENSJJAG00000003934	-	100	51.220	Jaculus_jaculus
ENSLACG00000018916	SBDS	99	72.332	ENSKMAG00000018542	sbds	100	72.332	Kryptolebias_marmoratus
ENSLACG00000018916	SBDS	99	72.727	ENSLBEG00000016687	sbds	100	72.727	Labrus_bergylta
ENSLACG00000018916	SBDS	100	75.984	ENSLOCG00000004073	sbds	100	75.984	Lepisosteus_oculatus
ENSLACG00000018916	SBDS	100	70.472	ENSLAFG00000008763	SBDS	100	70.472	Loxodonta_africana
ENSLACG00000018916	SBDS	100	70.472	ENSMFAG00000032620	SBDS	100	70.472	Macaca_fascicularis
ENSLACG00000018916	SBDS	100	70.472	ENSMMUG00000045653	SBDS	100	70.472	Macaca_mulatta
ENSLACG00000018916	SBDS	100	70.472	ENSMNEG00000031523	SBDS	100	70.472	Macaca_nemestrina
ENSLACG00000018916	SBDS	100	53.101	ENSMLEG00000036826	SBDS	100	53.101	Mandrillus_leucophaeus
ENSLACG00000018916	SBDS	99	73.518	ENSMAMG00000016062	sbds	100	73.518	Mastacembelus_armatus
ENSLACG00000018916	SBDS	99	74.308	ENSMZEG00005024385	sbds	100	74.308	Maylandia_zebra
ENSLACG00000018916	SBDS	100	73.622	ENSMGAG00000002119	SBDS	100	73.622	Meleagris_gallopavo
ENSLACG00000018916	SBDS	99	59.184	ENSMAUG00000022214	-	100	59.184	Mesocricetus_auratus
ENSLACG00000018916	SBDS	100	70.472	ENSMICG00000014366	SBDS	100	70.472	Microcebus_murinus
ENSLACG00000018916	SBDS	100	70.866	ENSMOCG00000011739	Sbds	100	70.866	Microtus_ochrogaster
ENSLACG00000018916	SBDS	99	67.315	ENSMMOG00000005061	sbds	100	67.717	Mola_mola
ENSLACG00000018916	SBDS	100	71.654	ENSMODG00000006644	SBDS	100	71.654	Monodelphis_domestica
ENSLACG00000018916	SBDS	99	70.751	ENSMALG00000010219	sbds	100	70.751	Monopterus_albus
ENSLACG00000018916	SBDS	100	70.866	MGP_CAROLIEiJ_G0027800	Sbds	98	90.476	Mus_caroli
ENSLACG00000018916	SBDS	100	70.472	ENSMUSG00000025337	Sbds	98	90.476	Mus_musculus
ENSLACG00000018916	SBDS	100	70.866	MGP_PahariEiJ_G0024384	Sbds	98	90.476	Mus_pahari
ENSLACG00000018916	SBDS	100	70.472	MGP_SPRETEiJ_G0028798	Sbds	98	90.476	Mus_spretus
ENSLACG00000018916	SBDS	69	81.657	ENSMPUG00000016192	SBDS	97	81.657	Mustela_putorius_furo
ENSLACG00000018916	SBDS	68	79.762	ENSMLUG00000013575	SBDS	93	79.762	Myotis_lucifugus
ENSLACG00000018916	SBDS	100	70.866	ENSNGAG00000012093	Sbds	100	70.866	Nannospalax_galili
ENSLACG00000018916	SBDS	99	74.308	ENSNBRG00000017027	sbds	100	74.308	Neolamprologus_brichardi
ENSLACG00000018916	SBDS	100	70.472	ENSNLEG00000013288	SBDS	100	70.472	Nomascus_leucogenys
ENSLACG00000018916	SBDS	100	69.685	ENSOPRG00000008721	SBDS	100	69.685	Ochotona_princeps
ENSLACG00000018916	SBDS	100	62.992	ENSODEG00000019253	-	84	62.992	Octodon_degus
ENSLACG00000018916	SBDS	99	59.592	ENSODEG00000000137	-	84	62.449	Octodon_degus
ENSLACG00000018916	SBDS	99	55.777	ENSODEG00000001116	-	99	55.777	Octodon_degus
ENSLACG00000018916	SBDS	99	73.518	ENSONIG00000005874	sbds	100	73.518	Oreochromis_niloticus
ENSLACG00000018916	SBDS	68	79.167	ENSOANG00000007674	-	81	79.167	Ornithorhynchus_anatinus
ENSLACG00000018916	SBDS	100	70.472	ENSOCUG00000003170	SBDS	100	70.472	Oryctolagus_cuniculus
ENSLACG00000018916	SBDS	99	71.206	ENSORLG00000023489	sbds	100	71.206	Oryzias_latipes
ENSLACG00000018916	SBDS	99	70.817	ENSORLG00020019282	sbds	100	70.817	Oryzias_latipes_hni
ENSLACG00000018916	SBDS	99	70.817	ENSORLG00015008005	sbds	100	70.817	Oryzias_latipes_hsok
ENSLACG00000018916	SBDS	99	70.817	ENSOMEG00000022747	sbds	100	70.817	Oryzias_melastigma
ENSLACG00000018916	SBDS	100	70.866	ENSOGAG00000009011	-	100	70.866	Otolemur_garnettii
ENSLACG00000018916	SBDS	100	58.268	ENSOGAG00000015036	-	100	58.268	Otolemur_garnettii
ENSLACG00000018916	SBDS	100	70.472	ENSOARG00000010609	SBDS	100	70.472	Ovis_aries
ENSLACG00000018916	SBDS	100	69.685	ENSPPAG00000043889	-	100	69.685	Pan_paniscus
ENSLACG00000018916	SBDS	100	70.079	ENSPPRG00000002307	SBDS	100	70.079	Panthera_pardus
ENSLACG00000018916	SBDS	100	70.079	ENSPTIG00000021308	SBDS	100	70.079	Panthera_tigris_altaica
ENSLACG00000018916	SBDS	86	65.929	ENSPTRG00000048174	-	99	65.929	Pan_troglodytes
ENSLACG00000018916	SBDS	100	70.472	ENSPTRG00000019254	SBDS	100	70.472	Pan_troglodytes
ENSLACG00000018916	SBDS	100	65.041	ENSPTRG00000047744	-	100	65.041	Pan_troglodytes
ENSLACG00000018916	SBDS	100	65.041	ENSPTRG00000050835	-	100	65.041	Pan_troglodytes
ENSLACG00000018916	SBDS	100	70.079	ENSPANG00000004078	SBDS	100	70.079	Papio_anubis
ENSLACG00000018916	SBDS	100	75.197	ENSPKIG00000006489	sbds	100	75.197	Paramormyrops_kingsleyae
ENSLACG00000018916	SBDS	68	85.714	ENSPSIG00000014603	SBDS	96	74.384	Pelodiscus_sinensis
ENSLACG00000018916	SBDS	99	73.123	ENSPMGG00000004246	sbds	100	73.123	Periophthalmus_magnuspinnatus
ENSLACG00000018916	SBDS	100	70.866	ENSPEMG00000008728	Sbds	100	70.866	Peromyscus_maniculatus_bairdii
ENSLACG00000018916	SBDS	100	71.654	ENSPCIG00000029718	SBDS	100	71.654	Phascolarctos_cinereus
ENSLACG00000018916	SBDS	99	71.146	ENSPFOG00000015837	sbds	100	71.146	Poecilia_formosa
ENSLACG00000018916	SBDS	99	71.542	ENSPLAG00000003641	sbds	100	71.542	Poecilia_latipinna
ENSLACG00000018916	SBDS	99	71.146	ENSPMEG00000019483	sbds	100	71.146	Poecilia_mexicana
ENSLACG00000018916	SBDS	99	71.146	ENSPREG00000018758	sbds	100	71.146	Poecilia_reticulata
ENSLACG00000018916	SBDS	100	70.472	ENSPPYG00000017513	SBDS	100	70.472	Pongo_abelii
ENSLACG00000018916	SBDS	100	70.079	ENSPCOG00000021098	SBDS	100	70.079	Propithecus_coquereli
ENSLACG00000018916	SBDS	100	70.866	ENSPVAG00000009369	SBDS	100	70.866	Pteropus_vampyrus
ENSLACG00000018916	SBDS	99	73.913	ENSPNYG00000022403	sbds	100	73.913	Pundamilia_nyererei
ENSLACG00000018916	SBDS	100	74.803	ENSPNAG00000001120	sbds	100	74.803	Pygocentrus_nattereri
ENSLACG00000018916	SBDS	100	70.472	ENSRNOG00000000888	Sbds	100	70.472	Rattus_norvegicus
ENSLACG00000018916	SBDS	100	70.472	ENSRBIG00000035557	SBDS	100	70.472	Rhinopithecus_bieti
ENSLACG00000018916	SBDS	100	70.472	ENSRROG00000040842	-	100	70.472	Rhinopithecus_roxellana
ENSLACG00000018916	SBDS	100	56.299	ENSRROG00000041986	-	100	56.299	Rhinopithecus_roxellana
ENSLACG00000018916	SBDS	96	36.400	YLR022C	-	96	36.400	Saccharomyces_cerevisiae
ENSLACG00000018916	SBDS	93	68.220	ENSSBOG00000022460	SBDS	100	68.220	Saimiri_boliviensis_boliviensis
ENSLACG00000018916	SBDS	100	71.206	ENSSHAG00000010263	SBDS	100	71.206	Sarcophilus_harrisii
ENSLACG00000018916	SBDS	100	78.740	ENSSFOG00015001108	sbds	100	78.740	Scleropages_formosus
ENSLACG00000018916	SBDS	99	72.332	ENSSMAG00000020506	sbds	100	72.332	Scophthalmus_maximus
ENSLACG00000018916	SBDS	99	73.518	ENSSDUG00000001528	sbds	100	73.518	Seriola_dumerili
ENSLACG00000018916	SBDS	99	73.123	ENSSLDG00000003659	sbds	100	73.123	Seriola_lalandi_dorsalis
ENSLACG00000018916	SBDS	57	90.476	ENSSARG00000001899	-	56	90.476	Sorex_araneus
ENSLACG00000018916	SBDS	61	66.879	ENSSARG00000013132	-	100	66.879	Sorex_araneus
ENSLACG00000018916	SBDS	100	72.835	ENSSPUG00000002699	SBDS	100	72.835	Sphenodon_punctatus
ENSLACG00000018916	SBDS	99	75.806	ENSSPAG00000016419	sbds	100	75.806	Stegastes_partitus
ENSLACG00000018916	SBDS	100	70.472	ENSSSCG00000007732	SBDS	100	70.472	Sus_scrofa
ENSLACG00000018916	SBDS	67	87.879	ENSTGUG00000003426	SBDS	99	87.879	Taeniopygia_guttata
ENSLACG00000018916	SBDS	99	72.332	ENSTRUG00000021443	sbds	100	72.332	Takifugu_rubripes
ENSLACG00000018916	SBDS	99	73.518	ENSTNIG00000019000	sbds	100	73.518	Tetraodon_nigroviridis
ENSLACG00000018916	SBDS	83	56.132	ENSTBEG00000001178	SBDS	100	56.132	Tupaia_belangeri
ENSLACG00000018916	SBDS	100	53.150	ENSTTRG00000003921	SBDS	100	53.150	Tursiops_truncatus
ENSLACG00000018916	SBDS	100	69.685	ENSUAMG00000001326	SBDS	100	69.685	Ursus_americanus
ENSLACG00000018916	SBDS	100	69.685	ENSUMAG00000015353	SBDS	100	69.685	Ursus_maritimus
ENSLACG00000018916	SBDS	100	69.685	ENSVVUG00000016478	SBDS	100	69.685	Vulpes_vulpes
ENSLACG00000018916	SBDS	100	75.984	ENSXETG00000010093	sbds	100	75.984	Xenopus_tropicalis
ENSLACG00000018916	SBDS	99	64.032	ENSXCOG00000010639	sbds	100	64.032	Xiphophorus_couchianus
ENSLACG00000018916	SBDS	99	71.937	ENSXMAG00000006065	sbds	100	71.937	Xiphophorus_maculatus