EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSLACG00000022448 (Gene tree)
Gene ID
102347003
Gene Symbol
LSM5
Alias
YER146W
Full Name
LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Latimeria_chalumnae
Status
putative
Strand
Plus strand
Length
12214 bases
Position
chrJH127142.1:718756-730969
Accession
102347003
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSLACP00000022136LSMPF01423.227.2e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSLACT00000025485LSM5-201657XM_006000148ENSLACP0000002213691 (aa)XP_006000210M3XHD0
Gene Model
Click here to download ENSLACG00000022448's gene model file
Pathways
Pathway IDPathway NameSource
lcm03018RNA degradationKEGG
lcm03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSLACG00000022448's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSLACG00000022448LSM57632.877ENSLACG00000012610SNRPE7732.877
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSLACG00000022448LSM510095.604ENSG00000106355LSM510095.604Homo_sapiens
ENSLACG00000022448LSM59093.902ENSAPOG00000011743LSM510096.774Acanthochromis_polyacanthus
ENSLACG00000022448LSM510094.505ENSAPOG00000020779LSM510095.294Acanthochromis_polyacanthus
ENSLACG00000022448LSM510095.604ENSAMEG00000006700LSM510095.604Ailuropoda_melanoleuca
ENSLACG00000022448LSM59659.770ENSACIG00000019185lsm59859.770Amphilophus_citrinellus
ENSLACG00000022448LSM510094.505ENSAOCG00000001636lsm510094.505Amphiprion_ocellaris
ENSLACG00000022448LSM510094.505ENSAPEG00000008151lsm510094.505Amphiprion_percula
ENSLACG00000022448LSM56896.774ENSAPEG00000008201lsm510096.774Amphiprion_percula
ENSLACG00000022448LSM59095.122ENSATEG00000020470lsm510060.440Anabas_testudineus
ENSLACG00000022448LSM58197.297ENSAPLG00000008171LSM510097.297Anas_platyrhynchos
ENSLACG00000022448LSM56296.429ENSACAG00000009530LSM59396.429Anolis_carolinensis
ENSLACG00000022448LSM510096.703ENSANAG00000034409-10096.703Aotus_nancymaae
ENSLACG00000022448LSM59993.333ENSANAG00000024192-9493.333Aotus_nancymaae
ENSLACG00000022448LSM510074.725ENSANAG00000037758-10074.725Aotus_nancymaae
ENSLACG00000022448LSM59696.552ENSACLG00000012891lsm59996.552Astatotilapia_calliptera
ENSLACG00000022448LSM510084.043ENSAMXG00000035543lsm510084.043Astyanax_mexicanus
ENSLACG00000022448LSM510095.604ENSBTAG00000002332LSM510095.604Bos_taurus
ENSLACG00000022448LSM55377.083ENSBTAG00000052014-6377.083Bos_taurus
ENSLACG00000022448LSM510072.527WBGene00003079lsm-510072.527Caenorhabditis_elegans
ENSLACG00000022448LSM510095.604ENSCJAG00000047379LSM58188.462Callithrix_jacchus
ENSLACG00000022448LSM59982.222ENSCJAG00000005678-10082.222Callithrix_jacchus
ENSLACG00000022448LSM55590.000ENSCAFG00000030781-5890.000Canis_familiaris
ENSLACG00000022448LSM510094.505ENSCAFG00000019261-10094.505Canis_familiaris
ENSLACG00000022448LSM510095.604ENSCAFG00020004946LSM510095.604Canis_lupus_dingo
ENSLACG00000022448LSM510093.407ENSCHIG00000004079-10093.407Capra_hircus
ENSLACG00000022448LSM510095.604ENSCHIG00000024539LSM510095.604Capra_hircus
ENSLACG00000022448LSM58172.973ENSCHIG00000021428-9570.455Capra_hircus
ENSLACG00000022448LSM510070.330ENSTSYG00000036637-10070.330Carlito_syrichta
ENSLACG00000022448LSM510095.604ENSTSYG00000006449-10095.604Carlito_syrichta
ENSLACG00000022448LSM510079.121ENSTSYG00000026530-9179.121Carlito_syrichta
ENSLACG00000022448LSM510083.516ENSTSYG00000028728-10083.516Carlito_syrichta
ENSLACG00000022448LSM58289.333ENSCAPG00000006980LSM510089.333Cavia_aperea
ENSLACG00000022448LSM510095.604ENSCPOG00000036386LSM510095.604Cavia_porcellus
ENSLACG00000022448LSM510076.923ENSCCAG00000032792-10076.923Cebus_capucinus
ENSLACG00000022448LSM510094.505ENSCCAG00000000821-10094.505Cebus_capucinus
ENSLACG00000022448LSM510093.407ENSCCAG00000032123-10093.407Cebus_capucinus
ENSLACG00000022448LSM510064.835ENSCCAG00000037334-10064.835Cebus_capucinus
ENSLACG00000022448LSM510095.604ENSCCAG00000037808-10095.604Cebus_capucinus
ENSLACG00000022448LSM59984.444ENSCATG00000014790-9594.545Cercocebus_atys
ENSLACG00000022448LSM510095.604ENSCATG00000040218LSM510095.604Cercocebus_atys
ENSLACG00000022448LSM510095.604ENSCLAG00000000202LSM510095.604Chinchilla_lanigera
ENSLACG00000022448LSM510080.220ENSCLAG00000005062-9080.220Chinchilla_lanigera
ENSLACG00000022448LSM58297.333ENSCHOG00000005335LSM59997.333Choloepus_hoffmanni
ENSLACG00000022448LSM510095.604ENSCPBG00000013685LSM510095.604Chrysemys_picta_bellii
ENSLACG00000022448LSM59886.517ENSCING00000020625-9986.517Ciona_intestinalis
ENSLACG00000022448LSM59586.047ENSCSAVG00000001439-9886.047Ciona_savignyi
ENSLACG00000022448LSM510095.604ENSCANG00000039909LSM510095.604Colobus_angolensis_palliatus
ENSLACG00000022448LSM510095.604ENSCGRG00001015461Lsm510095.604Cricetulus_griseus_chok1gshd
ENSLACG00000022448LSM58296.000ENSCGRG00000007677Lsm510096.000Cricetulus_griseus_crigri
ENSLACG00000022448LSM510058.242ENSCSEG00000015286lsm510058.242Cynoglossus_semilaevis
ENSLACG00000022448LSM510095.604ENSCVAG00000004262lsm510095.604Cyprinodon_variegatus
ENSLACG00000022448LSM510096.703ENSDARG00000071573lsm510098.387Danio_rerio
ENSLACG00000022448LSM59686.207ENSDNOG00000049495-9686.207Dasypus_novemcinctus
ENSLACG00000022448LSM510095.604ENSDNOG00000034958LSM510095.604Dasypus_novemcinctus
ENSLACG00000022448LSM510095.604ENSDORG00000009422Lsm510095.604Dipodomys_ordii
ENSLACG00000022448LSM59581.395FBgn0035675CG66109581.395Drosophila_melanogaster
ENSLACG00000022448LSM510095.604ENSETEG00000018068LSM510095.604Echinops_telfairi
ENSLACG00000022448LSM59865.169ENSETEG00000000777-9965.169Echinops_telfairi
ENSLACG00000022448LSM58177.027ENSETEG00000016074-9877.027Echinops_telfairi
ENSLACG00000022448LSM59973.333ENSETEG00000001469-9973.333Echinops_telfairi
ENSLACG00000022448LSM510075.824ENSETEG00000010651-10075.824Echinops_telfairi
ENSLACG00000022448LSM510093.407ENSEBUG00000008540lsm510093.407Eptatretus_burgeri
ENSLACG00000022448LSM510095.604ENSEASG00005003500LSM510095.604Equus_asinus_asinus
ENSLACG00000022448LSM510081.319ENSECAG00000018445LSM510081.319Equus_caballus
ENSLACG00000022448LSM56391.228ENSEEUG00000004102LSM59591.228Erinaceus_europaeus
ENSLACG00000022448LSM510096.703ENSELUG00000007792lsm510096.703Esox_lucius
ENSLACG00000022448LSM510095.604ENSFCAG00000000230LSM510095.604Felis_catus
ENSLACG00000022448LSM58496.053ENSFALG00000001892LSM59296.053Ficedula_albicollis
ENSLACG00000022448LSM510095.604ENSFDAG00000008767LSM510095.604Fukomys_damarensis
ENSLACG00000022448LSM510064.835ENSFDAG00000008685-10064.835Fukomys_damarensis
ENSLACG00000022448LSM59976.667ENSFHEG00000004011lsm59479.310Fundulus_heteroclitus
ENSLACG00000022448LSM59995.556ENSGMOG00000018235lsm510095.556Gadus_morhua
ENSLACG00000022448LSM510095.604ENSGALG00000041625LSM510095.604Gallus_gallus
ENSLACG00000022448LSM56896.774ENSGAFG00000016824lsm510096.774Gambusia_affinis
ENSLACG00000022448LSM510094.505ENSGACG00000005528lsm510094.505Gasterosteus_aculeatus
ENSLACG00000022448LSM510095.604ENSGAGG00000015593LSM510095.604Gopherus_agassizii
ENSLACG00000022448LSM510095.604ENSGGOG00000043469LSM510095.604Gorilla_gorilla
ENSLACG00000022448LSM59696.552ENSHBUG00000013773lsm59996.552Haplochromis_burtoni
ENSLACG00000022448LSM510095.604ENSHGLG00000011765LSM510095.604Heterocephalus_glaber_female
ENSLACG00000022448LSM510092.308ENSHGLG00100015610LSM510092.308Heterocephalus_glaber_male
ENSLACG00000022448LSM510060.440ENSHCOG00000008288lsm510060.440Hippocampus_comes
ENSLACG00000022448LSM510095.604ENSIPUG00000021095LSM510095.604Ictalurus_punctatus
ENSLACG00000022448LSM59676.404ENSSTOG00000033886-10076.404Ictidomys_tridecemlineatus
ENSLACG00000022448LSM510095.604ENSSTOG00000012662LSM510095.604Ictidomys_tridecemlineatus
ENSLACG00000022448LSM58789.873ENSJJAG00000004475-10089.873Jaculus_jaculus
ENSLACG00000022448LSM510070.330ENSJJAG00000016144-9270.330Jaculus_jaculus
ENSLACG00000022448LSM510093.407ENSJJAG00000012145-10093.407Jaculus_jaculus
ENSLACG00000022448LSM510093.407ENSKMAG00000021861lsm510093.407Kryptolebias_marmoratus
ENSLACG00000022448LSM56282.143ENSLBEG00000017379lsm59282.143Labrus_bergylta
ENSLACG00000022448LSM59095.122ENSLBEG00000009235LSM56595.122Labrus_bergylta
ENSLACG00000022448LSM510096.703ENSLOCG00000012903lsm510096.703Lepisosteus_oculatus
ENSLACG00000022448LSM510070.330ENSLAFG00000027938-10070.330Loxodonta_africana
ENSLACG00000022448LSM510095.604ENSLAFG00000029579LSM510095.604Loxodonta_africana
ENSLACG00000022448LSM510095.604ENSMFAG00000038508LSM510095.604Macaca_fascicularis
ENSLACG00000022448LSM510092.308ENSMFAG00000030152-10092.308Macaca_fascicularis
ENSLACG00000022448LSM55393.750ENSMFAG00000031187-8193.750Macaca_fascicularis
ENSLACG00000022448LSM55788.462ENSMMUG00000045129-8188.462Macaca_mulatta
ENSLACG00000022448LSM510092.308ENSMMUG00000030131-10092.308Macaca_mulatta
ENSLACG00000022448LSM59985.556ENSMMUG00000039822-10085.556Macaca_mulatta
ENSLACG00000022448LSM510095.604ENSMNEG00000015331LSM510095.604Macaca_nemestrina
ENSLACG00000022448LSM510092.308ENSMNEG00000037935-10092.308Macaca_nemestrina
ENSLACG00000022448LSM510095.604ENSMLEG00000024945LSM510095.604Mandrillus_leucophaeus
ENSLACG00000022448LSM59884.270ENSMLEG00000034037-10084.270Mandrillus_leucophaeus
ENSLACG00000022448LSM510091.209ENSMAMG00000012869lsm510091.209Mastacembelus_armatus
ENSLACG00000022448LSM59696.552ENSMZEG00005019554lsm59996.552Maylandia_zebra
ENSLACG00000022448LSM510095.604ENSMGAG00000012117LSM510095.604Meleagris_gallopavo
ENSLACG00000022448LSM510094.505ENSMAUG00000008132-10094.505Mesocricetus_auratus
ENSLACG00000022448LSM510095.604ENSMAUG00000012222Lsm510095.604Mesocricetus_auratus
ENSLACG00000022448LSM59974.444ENSMICG00000033928-9674.444Microcebus_murinus
ENSLACG00000022448LSM510095.604ENSMICG00000005353LSM510095.604Microcebus_murinus
ENSLACG00000022448LSM510095.604ENSMOCG00000012018Lsm510095.604Microtus_ochrogaster
ENSLACG00000022448LSM58497.368ENSMMOG00000004026lsm58797.368Mola_mola
ENSLACG00000022448LSM56895.161ENSMODG00000013274-10095.161Monodelphis_domestica
ENSLACG00000022448LSM56896.774ENSMALG00000010343lsm510096.774Monopterus_albus
ENSLACG00000022448LSM510095.604MGP_CAROLIEiJ_G0028421Lsm510095.604Mus_caroli
ENSLACG00000022448LSM510095.604ENSMUSG00000091625Lsm510095.604Mus_musculus
ENSLACG00000022448LSM510095.604MGP_PahariEiJ_G0022171Lsm510095.604Mus_pahari
ENSLACG00000022448LSM510095.604MGP_SPRETEiJ_G0029423Lsm510095.604Mus_spretus
ENSLACG00000022448LSM510095.604ENSMLUG00000017028LSM510095.604Myotis_lucifugus
ENSLACG00000022448LSM510082.796ENSNGAG00000017707-10082.796Nannospalax_galili
ENSLACG00000022448LSM59975.556ENSNGAG00000022569-9675.556Nannospalax_galili
ENSLACG00000022448LSM510095.604ENSNGAG00000024142Lsm510095.604Nannospalax_galili
ENSLACG00000022448LSM56396.491ENSNBRG00000011386lsm57696.491Neolamprologus_brichardi
ENSLACG00000022448LSM510095.604ENSNLEG00000015268LSM510095.604Nomascus_leucogenys
ENSLACG00000022448LSM58296.000ENSOPRG00000002443LSM510096.000Ochotona_princeps
ENSLACG00000022448LSM510095.604ENSODEG00000008258-10095.604Octodon_degus
ENSLACG00000022448LSM510095.604ENSODEG00000019072-10095.604Octodon_degus
ENSLACG00000022448LSM58260.000ENSOANG00000014540-10060.000Ornithorhynchus_anatinus
ENSLACG00000022448LSM510095.604ENSOCUG00000029043LSM510095.604Oryctolagus_cuniculus
ENSLACG00000022448LSM510095.604ENSORLG00000027725lsm55895.604Oryzias_latipes
ENSLACG00000022448LSM59690.805ENSORLG00020003019lsm58395.000Oryzias_latipes_hni
ENSLACG00000022448LSM510095.604ENSORLG00015003338lsm510095.604Oryzias_latipes_hsok
ENSLACG00000022448LSM510094.505ENSOMEG00000001078lsm510094.505Oryzias_melastigma
ENSLACG00000022448LSM510095.604ENSOGAG00000013892LSM510095.604Otolemur_garnettii
ENSLACG00000022448LSM510095.604ENSOARG00000006944LSM510095.604Ovis_aries
ENSLACG00000022448LSM510095.604ENSPPAG00000003697-10095.604Pan_paniscus
ENSLACG00000022448LSM510095.604ENSPPRG00000002550LSM510095.604Panthera_pardus
ENSLACG00000022448LSM510095.604ENSPTIG00000015604LSM510095.604Panthera_tigris_altaica
ENSLACG00000022448LSM510079.121ENSPTRG00000049488-10081.319Pan_troglodytes
ENSLACG00000022448LSM510095.604ENSPTRG00000019057LSM510095.604Pan_troglodytes
ENSLACG00000022448LSM510095.604ENSPANG00000032179-10095.604Papio_anubis
ENSLACG00000022448LSM510091.209ENSPANG00000033477-10091.209Papio_anubis
ENSLACG00000022448LSM59985.556ENSPANG00000032538-10085.556Papio_anubis
ENSLACG00000022448LSM510096.703ENSPKIG00000011910lsm510096.703Paramormyrops_kingsleyae
ENSLACG00000022448LSM58197.297ENSPSIG00000014796LSM510097.297Pelodiscus_sinensis
ENSLACG00000022448LSM56896.774ENSPMGG00000011699lsm510096.774Periophthalmus_magnuspinnatus
ENSLACG00000022448LSM55295.745ENSPEMG00000019994-8095.745Peromyscus_maniculatus_bairdii
ENSLACG00000022448LSM510068.132ENSPEMG00000022375-10068.132Peromyscus_maniculatus_bairdii
ENSLACG00000022448LSM510095.604ENSPFOG00000001433lsm510095.604Poecilia_formosa
ENSLACG00000022448LSM510095.604ENSPLAG00000009665lsm510095.604Poecilia_latipinna
ENSLACG00000022448LSM510095.604ENSPMEG00000022265lsm510095.604Poecilia_mexicana
ENSLACG00000022448LSM56896.774ENSPREG00000022452lsm510096.774Poecilia_reticulata
ENSLACG00000022448LSM510092.308ENSPPYG00000017661LSM510092.308Pongo_abelii
ENSLACG00000022448LSM58997.531ENSPCAG00000013740LSM510097.531Procavia_capensis
ENSLACG00000022448LSM510095.604ENSPVAG00000009786LSM510095.604Pteropus_vampyrus
ENSLACG00000022448LSM59696.552ENSPNYG00000022236lsm59996.552Pundamilia_nyererei
ENSLACG00000022448LSM510095.604ENSPNAG00000001887lsm510095.604Pygocentrus_nattereri
ENSLACG00000022448LSM510091.304ENSRNOG00000027305AABR07065089.110091.304Rattus_norvegicus
ENSLACG00000022448LSM510095.604ENSRNOG00000042126Lsm510095.604Rattus_norvegicus
ENSLACG00000022448LSM510095.604ENSRBIG00000030340-10095.604Rhinopithecus_bieti
ENSLACG00000022448LSM510095.604ENSRBIG00000027803-10095.604Rhinopithecus_bieti
ENSLACG00000022448LSM510095.604ENSRBIG00000030714-10095.604Rhinopithecus_bieti
ENSLACG00000022448LSM510094.505ENSRBIG00000024431-10094.505Rhinopithecus_bieti
ENSLACG00000022448LSM510095.604ENSRROG00000004655-10095.604Rhinopithecus_roxellana
ENSLACG00000022448LSM510095.604ENSRROG00000042782-10095.604Rhinopithecus_roxellana
ENSLACG00000022448LSM510095.604ENSRROG00000023884-10095.604Rhinopithecus_roxellana
ENSLACG00000022448LSM58548.780YER146W-8848.780Saccharomyces_cerevisiae
ENSLACG00000022448LSM510095.604ENSSBOG00000012312LSM510095.604Saimiri_boliviensis_boliviensis
ENSLACG00000022448LSM510093.407ENSSBOG00000019124-10093.407Saimiri_boliviensis_boliviensis
ENSLACG00000022448LSM510073.626ENSSBOG00000034794-10073.626Saimiri_boliviensis_boliviensis
ENSLACG00000022448LSM510096.703ENSSFOG00015010099lsm510096.703Scleropages_formosus
ENSLACG00000022448LSM510059.341ENSSMAG00000007895lsm510059.341Scophthalmus_maximus
ENSLACG00000022448LSM56896.774ENSSDUG00000010762lsm510096.774Seriola_dumerili
ENSLACG00000022448LSM58676.923ENSSLDG00000008014-9376.923Seriola_lalandi_dorsalis
ENSLACG00000022448LSM510095.604ENSSLDG00000025242lsm510095.604Seriola_lalandi_dorsalis
ENSLACG00000022448LSM510067.033ENSSARG00000003330LSM510067.033Sorex_araneus
ENSLACG00000022448LSM510093.407ENSSPUG00000002690LSM510093.548Sphenodon_punctatus
ENSLACG00000022448LSM510059.341ENSSPAG00000005435lsm510059.341Stegastes_partitus
ENSLACG00000022448LSM57686.957ENSSSCG00000029661-9686.957Sus_scrofa
ENSLACG00000022448LSM510095.604ENSSSCG00000026064-10095.604Sus_scrofa
ENSLACG00000022448LSM510093.407ENSTGUG00000017539LSM510093.407Taeniopygia_guttata
ENSLACG00000022448LSM58689.157ENSTRUG00000017749lsm56489.157Takifugu_rubripes
ENSLACG00000022448LSM59696.552ENSTNIG00000008695lsm59996.552Tetraodon_nigroviridis
ENSLACG00000022448LSM510095.604ENSTBEG00000004876LSM510095.604Tupaia_belangeri
ENSLACG00000022448LSM510095.604ENSTTRG00000004237LSM510095.604Tursiops_truncatus
ENSLACG00000022448LSM55788.462ENSUAMG00000009786LSM56888.462Ursus_americanus
ENSLACG00000022448LSM510094.505ENSUMAG00000002625LSM56594.505Ursus_maritimus
ENSLACG00000022448LSM510095.604ENSVPAG00000009985LSM510095.604Vicugna_pacos
ENSLACG00000022448LSM510095.604ENSVVUG00000021311LSM510095.604Vulpes_vulpes
ENSLACG00000022448LSM59092.683ENSXETG00000026465lsm510092.683Xenopus_tropicalis
ENSLACG00000022448LSM56896.774ENSXCOG00000015348lsm510096.774Xiphophorus_couchianus
ENSLACG00000022448LSM510095.604ENSXMAG00000029988lsm510095.604Xiphophorus_maculatus

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