EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLAFG00000000159 (Gene tree)
Gene ID: -
Gene Symbol: CPSF4
Alias: CPSF30|NAR
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Loxodonta_africana
Status: putative
Strand: Plus strand
Length: 15019 bases
Position: chrscaffold_45:10418378-10433396
Accession: 100661563
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLAFP00000000130	zf-CCCH	PF00642.24	2.9e-20	1	2
ENSLAFP00000000130	zf-CCCH	PF00642.24	2.9e-20	2	2
ENSLAFP00000008954	zf-CCCH	PF00642.24	8.1e-14	1	2
ENSLAFP00000008954	zf-CCCH	PF00642.24	8.1e-14	2	2
ENSLAFP00000008954	zf-CCHC	PF00098.23	1.9e-06	1	1
ENSLAFP00000000130	zf-CCHC	PF00098.23	3.7e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLAFT00000010697	CPSF4-202	486	-	ENSLAFP00000008954	161 (aa)	-	G3T638
ENSLAFT00000000160	CPSF4-201	807	-	ENSLAFP00000000130	269 (aa)	XP_003416579	G3SL71

Gene Model

Click here to download ENSLAFG00000000159's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLAFG00000000159's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLAFG00000000159	CPSF4	65	65.909	ENSLAFG00000010697	CPSF4L	100	65.909

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLAFG00000000159	CPSF4	100	98.885	ENSG00000160917	CPSF4	100	100.000	Homo_sapiens
ENSLAFG00000000159	CPSF4	67	75.275	ENSAPOG00000004921	cpsf4	100	75.275	Acanthochromis_polyacanthus
ENSLAFG00000000159	CPSF4	100	99.628	ENSAMEG00000006252	CPSF4	100	99.628	Ailuropoda_melanoleuca
ENSLAFG00000000159	CPSF4	100	79.926	ENSACIG00000009248	cpsf4	100	78.067	Amphilophus_citrinellus
ENSLAFG00000000159	CPSF4	100	84.815	ENSAOCG00000019616	cpsf4	100	84.815	Amphiprion_ocellaris
ENSLAFG00000000159	CPSF4	100	84.815	ENSAPEG00000011679	cpsf4	100	84.815	Amphiprion_percula
ENSLAFG00000000159	CPSF4	100	84.926	ENSATEG00000007010	cpsf4	100	84.926	Anabas_testudineus
ENSLAFG00000000159	CPSF4	100	92.937	ENSACAG00000012941	CPSF4	89	92.937	Anolis_carolinensis
ENSLAFG00000000159	CPSF4	100	98.885	ENSANAG00000021360	CPSF4	100	98.885	Aotus_nancymaae
ENSLAFG00000000159	CPSF4	100	84.074	ENSACLG00000010374	cpsf4	100	84.074	Astatotilapia_calliptera
ENSLAFG00000000159	CPSF4	100	84.871	ENSAMXG00000031647	cpsf4	100	85.609	Astyanax_mexicanus
ENSLAFG00000000159	CPSF4	100	89.219	ENSBTAG00000002090	CPSF4	100	89.219	Bos_taurus
ENSLAFG00000000159	CPSF4	100	98.885	ENSCJAG00000015826	CPSF4	100	98.885	Callithrix_jacchus
ENSLAFG00000000159	CPSF4	100	99.257	ENSCAFG00000015036	CPSF4	100	99.257	Canis_familiaris
ENSLAFG00000000159	CPSF4	100	98.137	ENSCAFG00020014462	CPSF4	100	92.937	Canis_lupus_dingo
ENSLAFG00000000159	CPSF4	100	98.885	ENSCHIG00000014313	CPSF4	100	98.885	Capra_hircus
ENSLAFG00000000159	CPSF4	100	88.889	ENSTSYG00000014604	-	100	78.889	Carlito_syrichta
ENSLAFG00000000159	CPSF4	100	98.137	ENSTSYG00000005712	-	100	89.591	Carlito_syrichta
ENSLAFG00000000159	CPSF4	100	89.506	ENSTSYG00000008195	-	89	89.506	Carlito_syrichta
ENSLAFG00000000159	CPSF4	100	98.758	ENSCAPG00000013881	CPSF4	87	99.541	Cavia_aperea
ENSLAFG00000000159	CPSF4	100	98.758	ENSCPOG00000001783	CPSF4	100	90.335	Cavia_porcellus
ENSLAFG00000000159	CPSF4	100	98.885	ENSCCAG00000028291	CPSF4	100	98.885	Cebus_capucinus
ENSLAFG00000000159	CPSF4	100	98.885	ENSCATG00000038440	CPSF4	100	98.885	Cercocebus_atys
ENSLAFG00000000159	CPSF4	100	99.257	ENSCLAG00000007050	CPSF4	100	99.257	Chinchilla_lanigera
ENSLAFG00000000159	CPSF4	100	98.885	ENSCSAG00000017795	CPSF4	100	98.885	Chlorocebus_sabaeus
ENSLAFG00000000159	CPSF4	61	81.212	ENSCPBG00000010269	-	100	80.723	Chrysemys_picta_bellii
ENSLAFG00000000159	CPSF4	80	94.907	ENSCPBG00000020869	CPSF4	100	94.907	Chrysemys_picta_bellii
ENSLAFG00000000159	CPSF4	97	55.939	ENSCING00000021080	-	97	55.939	Ciona_intestinalis
ENSLAFG00000000159	CPSF4	96	53.357	ENSCSAVG00000011469	-	97	53.025	Ciona_savignyi
ENSLAFG00000000159	CPSF4	100	98.885	ENSCANG00000019384	CPSF4	100	98.885	Colobus_angolensis_palliatus
ENSLAFG00000000159	CPSF4	100	98.758	ENSCGRG00001024184	Cpsf4	100	90.335	Cricetulus_griseus_chok1gshd
ENSLAFG00000000159	CPSF4	100	99.628	ENSCGRG00000013892	Cpsf4	100	99.628	Cricetulus_griseus_crigri
ENSLAFG00000000159	CPSF4	100	85.714	ENSCSEG00000019055	cpsf4	100	84.444	Cynoglossus_semilaevis
ENSLAFG00000000159	CPSF4	100	82.963	ENSCVAG00000016528	cpsf4	100	82.963	Cyprinodon_variegatus
ENSLAFG00000000159	CPSF4	100	85.609	ENSDARG00000020217	cpsf4	100	85.609	Danio_rerio
ENSLAFG00000000159	CPSF4	100	99.257	ENSDNOG00000006344	CPSF4	100	99.257	Dasypus_novemcinctus
ENSLAFG00000000159	CPSF4	81	99.078	ENSDORG00000000742	Cpsf4	100	99.078	Dipodomys_ordii
ENSLAFG00000000159	CPSF4	100	54.949	FBgn0015621	Clp	99	54.795	Drosophila_melanogaster
ENSLAFG00000000159	CPSF4	70	100.000	ENSETEG00000002608	CPSF4	70	100.000	Echinops_telfairi
ENSLAFG00000000159	CPSF4	99	65.169	ENSEBUG00000012552	cpsf4	98	65.169	Eptatretus_burgeri
ENSLAFG00000000159	CPSF4	100	90.335	ENSEASG00005002487	CPSF4	100	90.335	Equus_asinus_asinus
ENSLAFG00000000159	CPSF4	100	99.628	ENSECAG00000007525	CPSF4	100	99.628	Equus_caballus
ENSLAFG00000000159	CPSF4	80	100.000	ENSEEUG00000002158	CPSF4	73	100.000	Erinaceus_europaeus
ENSLAFG00000000159	CPSF4	100	83.212	ENSELUG00000011481	cpsf4	100	81.022	Esox_lucius
ENSLAFG00000000159	CPSF4	100	99.628	ENSFCAG00000015070	CPSF4	100	99.628	Felis_catus
ENSLAFG00000000159	CPSF4	100	85.502	ENSFALG00000013799	CPSF4	100	84.015	Ficedula_albicollis
ENSLAFG00000000159	CPSF4	61	56.977	ENSFALG00000012906	-	100	56.977	Ficedula_albicollis
ENSLAFG00000000159	CPSF4	100	98.758	ENSFDAG00000014092	CPSF4	100	98.765	Fukomys_damarensis
ENSLAFG00000000159	CPSF4	100	82.963	ENSFHEG00000010880	cpsf4	100	82.963	Fundulus_heteroclitus
ENSLAFG00000000159	CPSF4	100	77.860	ENSGMOG00000002330	cpsf4	100	76.384	Gadus_morhua
ENSLAFG00000000159	CPSF4	99	38.421	ENSGALG00000004441	-	92	36.842	Gallus_gallus
ENSLAFG00000000159	CPSF4	100	85.502	ENSGALG00000004714	CPSF4	100	84.387	Gallus_gallus
ENSLAFG00000000159	CPSF4	100	82.593	ENSGAFG00000010580	cpsf4	100	82.593	Gambusia_affinis
ENSLAFG00000000159	CPSF4	100	77.860	ENSGACG00000007792	cpsf4	100	76.753	Gasterosteus_aculeatus
ENSLAFG00000000159	CPSF4	100	95.167	ENSGAGG00000021835	CPSF4	100	95.167	Gopherus_agassizii
ENSLAFG00000000159	CPSF4	61	81.212	ENSGAGG00000020579	-	92	81.212	Gopherus_agassizii
ENSLAFG00000000159	CPSF4	100	98.885	ENSGGOG00000015131	CPSF4	100	98.885	Gorilla_gorilla
ENSLAFG00000000159	CPSF4	100	84.074	ENSHBUG00000013699	cpsf4	100	84.074	Haplochromis_burtoni
ENSLAFG00000000159	CPSF4	100	98.137	ENSHGLG00000017150	CPSF4	100	97.786	Heterocephalus_glaber_female
ENSLAFG00000000159	CPSF4	99	96.875	ENSHGLG00100009215	-	100	95.763	Heterocephalus_glaber_male
ENSLAFG00000000159	CPSF4	100	63.975	ENSHGLG00100017302	-	100	53.532	Heterocephalus_glaber_male
ENSLAFG00000000159	CPSF4	100	81.481	ENSHCOG00000004397	cpsf4	100	78.889	Hippocampus_comes
ENSLAFG00000000159	CPSF4	100	83.764	ENSIPUG00000017147	cpsf4	100	84.926	Ictalurus_punctatus
ENSLAFG00000000159	CPSF4	100	99.628	ENSSTOG00000001688	CPSF4	100	99.628	Ictidomys_tridecemlineatus
ENSLAFG00000000159	CPSF4	100	99.257	ENSJJAG00000019426	Cpsf4	100	99.257	Jaculus_jaculus
ENSLAFG00000000159	CPSF4	100	81.852	ENSKMAG00000015642	cpsf4	100	81.852	Kryptolebias_marmoratus
ENSLAFG00000000159	CPSF4	100	88.519	ENSLACG00000010938	CPSF4	100	88.519	Latimeria_chalumnae
ENSLAFG00000000159	CPSF4	100	60.741	ENSLACG00000018470	-	100	60.741	Latimeria_chalumnae
ENSLAFG00000000159	CPSF4	100	89.219	ENSLOCG00000004814	cpsf4	100	89.219	Lepisosteus_oculatus
ENSLAFG00000000159	CPSF4	100	98.885	ENSMFAG00000001462	CPSF4	100	98.885	Macaca_fascicularis
ENSLAFG00000000159	CPSF4	100	98.885	ENSMMUG00000019191	CPSF4	100	98.885	Macaca_mulatta
ENSLAFG00000000159	CPSF4	100	98.885	ENSMNEG00000032306	CPSF4	100	98.885	Macaca_nemestrina
ENSLAFG00000000159	CPSF4	100	98.885	ENSMLEG00000034721	CPSF4	100	98.885	Mandrillus_leucophaeus
ENSLAFG00000000159	CPSF4	100	84.444	ENSMAMG00000006244	cpsf4	100	83.883	Mastacembelus_armatus
ENSLAFG00000000159	CPSF4	100	84.074	ENSMZEG00005007515	cpsf4	100	84.074	Maylandia_zebra
ENSLAFG00000000159	CPSF4	100	77.202	ENSMGAG00000004235	CPSF4	100	82.553	Meleagris_gallopavo
ENSLAFG00000000159	CPSF4	100	99.628	ENSMAUG00000021253	Cpsf4	100	99.628	Mesocricetus_auratus
ENSLAFG00000000159	CPSF4	100	98.885	ENSMICG00000017429	CPSF4	100	98.885	Microcebus_murinus
ENSLAFG00000000159	CPSF4	100	99.628	ENSMOCG00000014901	Cpsf4	100	99.628	Microtus_ochrogaster
ENSLAFG00000000159	CPSF4	100	85.714	ENSMMOG00000001813	cpsf4	100	84.074	Mola_mola
ENSLAFG00000000159	CPSF4	100	96.654	ENSMODG00000001367	CPSF4	100	96.654	Monodelphis_domestica
ENSLAFG00000000159	CPSF4	100	82.593	ENSMALG00000012611	cpsf4	100	82.593	Monopterus_albus
ENSLAFG00000000159	CPSF4	100	99.628	MGP_CAROLIEiJ_G0028012	Cpsf4	100	99.628	Mus_caroli
ENSLAFG00000000159	CPSF4	100	99.628	ENSMUSG00000029625	Cpsf4	100	99.628	Mus_musculus
ENSLAFG00000000159	CPSF4	100	99.628	MGP_PahariEiJ_G0024581	Cpsf4	100	99.628	Mus_pahari
ENSLAFG00000000159	CPSF4	100	99.257	MGP_SPRETEiJ_G0029013	Cpsf4	100	99.257	Mus_spretus
ENSLAFG00000000159	CPSF4	100	99.628	ENSMPUG00000016508	CPSF4	100	99.628	Mustela_putorius_furo
ENSLAFG00000000159	CPSF4	100	81.865	ENSMLUG00000010980	CPSF4	100	87.660	Myotis_lucifugus
ENSLAFG00000000159	CPSF4	100	99.257	ENSNGAG00000001567	Cpsf4	100	99.257	Nannospalax_galili
ENSLAFG00000000159	CPSF4	91	83.740	ENSNBRG00000003943	cpsf4	98	83.740	Neolamprologus_brichardi
ENSLAFG00000000159	CPSF4	100	97.516	ENSNLEG00000011074	CPSF4	100	95.911	Nomascus_leucogenys
ENSLAFG00000000159	CPSF4	100	96.654	ENSMEUG00000006955	CPSF4	100	96.654	Notamacropus_eugenii
ENSLAFG00000000159	CPSF4	100	98.885	ENSOPRG00000013663	CPSF4	100	98.885	Ochotona_princeps
ENSLAFG00000000159	CPSF4	100	74.725	ENSODEG00000009779	-	100	74.725	Octodon_degus
ENSLAFG00000000159	CPSF4	100	99.628	ENSODEG00000011181	-	100	99.628	Octodon_degus
ENSLAFG00000000159	CPSF4	98	83.851	ENSODEG00000018283	-	91	73.962	Octodon_degus
ENSLAFG00000000159	CPSF4	100	84.074	ENSONIG00000008495	cpsf4	100	84.074	Oreochromis_niloticus
ENSLAFG00000000159	CPSF4	100	55.036	ENSOANG00000009568	-	100	53.237	Ornithorhynchus_anatinus
ENSLAFG00000000159	CPSF4	87	94.894	ENSOANG00000007729	CPSF4	100	94.894	Ornithorhynchus_anatinus
ENSLAFG00000000159	CPSF4	100	98.885	ENSOCUG00000002437	CPSF4	70	98.885	Oryctolagus_cuniculus
ENSLAFG00000000159	CPSF4	100	82.900	ENSORLG00000022798	cpsf4	100	82.900	Oryzias_latipes
ENSLAFG00000000159	CPSF4	100	82.900	ENSORLG00020008548	cpsf4	100	82.900	Oryzias_latipes_hni
ENSLAFG00000000159	CPSF4	100	82.528	ENSORLG00015019575	cpsf4	100	82.528	Oryzias_latipes_hsok
ENSLAFG00000000159	CPSF4	100	82.609	ENSOMEG00000005176	cpsf4	100	81.413	Oryzias_melastigma
ENSLAFG00000000159	CPSF4	100	99.257	ENSOGAG00000010884	CPSF4	100	99.257	Otolemur_garnettii
ENSLAFG00000000159	CPSF4	100	87.912	ENSOARG00000018668	CPSF4	100	87.546	Ovis_aries
ENSLAFG00000000159	CPSF4	100	98.513	ENSPPAG00000043355	CPSF4	100	98.513	Pan_paniscus
ENSLAFG00000000159	CPSF4	100	99.628	ENSPPRG00000003134	CPSF4	100	99.628	Panthera_pardus
ENSLAFG00000000159	CPSF4	100	98.137	ENSPTIG00000005604	CPSF4	90	99.174	Panthera_tigris_altaica
ENSLAFG00000000159	CPSF4	100	98.513	ENSPTRG00000019453	CPSF4	100	98.513	Pan_troglodytes
ENSLAFG00000000159	CPSF4	100	98.885	ENSPANG00000023123	CPSF4	100	98.885	Papio_anubis
ENSLAFG00000000159	CPSF4	100	83.577	ENSPKIG00000014278	cpsf4	100	83.577	Paramormyrops_kingsleyae
ENSLAFG00000000159	CPSF4	100	52.332	ENSPSIG00000018198	-	100	58.257	Pelodiscus_sinensis
ENSLAFG00000000159	CPSF4	80	94.444	ENSPSIG00000011229	CPSF4	100	94.444	Pelodiscus_sinensis
ENSLAFG00000000159	CPSF4	100	73.234	ENSPMGG00000017735	cpsf4	100	71.956	Periophthalmus_magnuspinnatus
ENSLAFG00000000159	CPSF4	100	99.628	ENSPEMG00000004508	Cpsf4	100	99.628	Peromyscus_maniculatus_bairdii
ENSLAFG00000000159	CPSF4	100	96.654	ENSPCIG00000024776	CPSF4	100	96.654	Phascolarctos_cinereus
ENSLAFG00000000159	CPSF4	100	82.593	ENSPFOG00000014912	cpsf4	100	82.593	Poecilia_formosa
ENSLAFG00000000159	CPSF4	100	75.465	ENSPLAG00000009599	cpsf4	100	75.465	Poecilia_latipinna
ENSLAFG00000000159	CPSF4	100	82.593	ENSPMEG00000009790	cpsf4	100	82.593	Poecilia_mexicana
ENSLAFG00000000159	CPSF4	100	82.222	ENSPREG00000018166	cpsf4	100	79.259	Poecilia_reticulata
ENSLAFG00000000159	CPSF4	87	97.863	ENSPPYG00000017378	CPSF4	100	97.863	Pongo_abelii
ENSLAFG00000000159	CPSF4	100	99.257	ENSPCAG00000001892	CPSF4	100	99.257	Procavia_capensis
ENSLAFG00000000159	CPSF4	100	99.257	ENSPCOG00000012771	CPSF4	100	99.257	Propithecus_coquereli
ENSLAFG00000000159	CPSF4	100	92.937	ENSPVAG00000007531	CPSF4	100	92.937	Pteropus_vampyrus
ENSLAFG00000000159	CPSF4	100	84.074	ENSPNYG00000018559	cpsf4	100	84.074	Pundamilia_nyererei
ENSLAFG00000000159	CPSF4	100	86.716	ENSPNAG00000003736	cpsf4	100	87.454	Pygocentrus_nattereri
ENSLAFG00000000159	CPSF4	100	98.758	ENSRNOG00000000985	Cpsf4	100	89.963	Rattus_norvegicus
ENSLAFG00000000159	CPSF4	100	97.516	ENSRBIG00000033886	CPSF4	100	98.718	Rhinopithecus_bieti
ENSLAFG00000000159	CPSF4	100	97.516	ENSRROG00000040431	CPSF4	100	89.591	Rhinopithecus_roxellana
ENSLAFG00000000159	CPSF4	100	98.885	ENSSBOG00000020493	CPSF4	100	98.885	Saimiri_boliviensis_boliviensis
ENSLAFG00000000159	CPSF4	100	96.654	ENSSHAG00000011533	CPSF4	100	96.654	Sarcophilus_harrisii
ENSLAFG00000000159	CPSF4	100	84.783	ENSSFOG00015007883	cpsf4	100	85.507	Scleropages_formosus
ENSLAFG00000000159	CPSF4	100	79.554	ENSSMAG00000006374	cpsf4	100	78.067	Scophthalmus_maximus
ENSLAFG00000000159	CPSF4	100	84.074	ENSSDUG00000018887	cpsf4	100	84.074	Seriola_dumerili
ENSLAFG00000000159	CPSF4	100	84.074	ENSSLDG00000019078	cpsf4	100	84.074	Seriola_lalandi_dorsalis
ENSLAFG00000000159	CPSF4	87	99.145	ENSSARG00000012416	CPSF4	100	99.145	Sorex_araneus
ENSLAFG00000000159	CPSF4	96	59.615	ENSSPUG00000014803	-	97	58.140	Sphenodon_punctatus
ENSLAFG00000000159	CPSF4	100	93.680	ENSSPUG00000003549	CPSF4	100	93.680	Sphenodon_punctatus
ENSLAFG00000000159	CPSF4	100	80.297	ENSSPAG00000006174	cpsf4	100	77.323	Stegastes_partitus
ENSLAFG00000000159	CPSF4	100	89.963	ENSSSCG00000026896	CPSF4	100	89.963	Sus_scrofa
ENSLAFG00000000159	CPSF4	100	84.502	ENSTGUG00000007552	CPSF4	100	83.026	Taeniopygia_guttata
ENSLAFG00000000159	CPSF4	100	81.319	ENSTRUG00000024220	cpsf4	100	81.319	Takifugu_rubripes
ENSLAFG00000000159	CPSF4	100	80.370	ENSTNIG00000006265	cpsf4	100	81.852	Tetraodon_nigroviridis
ENSLAFG00000000159	CPSF4	87	89.744	ENSTBEG00000011406	CPSF4	100	89.744	Tupaia_belangeri
ENSLAFG00000000159	CPSF4	100	78.067	ENSTTRG00000003007	CPSF4	100	78.067	Tursiops_truncatus
ENSLAFG00000000159	CPSF4	92	89.069	ENSUAMG00000008051	CPSF4	85	89.069	Ursus_americanus
ENSLAFG00000000159	CPSF4	100	89.963	ENSUMAG00000009474	CPSF4	100	89.963	Ursus_maritimus
ENSLAFG00000000159	CPSF4	100	89.963	ENSVVUG00000008824	CPSF4	100	89.963	Vulpes_vulpes
ENSLAFG00000000159	CPSF4	100	87.814	ENSXETG00000009892	cpsf4	100	87.814	Xenopus_tropicalis
ENSLAFG00000000159	CPSF4	99	60.821	ENSXETG00000004641	cpsf4l	99	60.821	Xenopus_tropicalis
ENSLAFG00000000159	CPSF4	100	84.472	ENSXCOG00000016040	cpsf4	100	82.222	Xiphophorus_couchianus
ENSLAFG00000000159	CPSF4	100	82.593	ENSXMAG00000024670	cpsf4	100	82.593	Xiphophorus_maculatus