EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLAFG00000000448 (Gene tree)
Gene ID: -
Gene Symbol: SF3A1
Alias: -
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Loxodonta_africana
Status: putative
Strand: Plus strand
Length: 24276 bases
Position: chrscaffold_68:4155122-4179397
Accession: 100658613
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLAFP00000000382	PRP21_like_P	PF12230.8	8.6e-52	1	1
ENSLAFP00000024049	PRP21_like_P	PF12230.8	6.4e-45	1	1
ENSLAFP00000024049	Surp	PF01805.20	5.9e-46	1	2
ENSLAFP00000024049	Surp	PF01805.20	5.9e-46	2	2
ENSLAFP00000000382	Surp	PF01805.20	5.9e-46	1	2
ENSLAFP00000000382	Surp	PF01805.20	5.9e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLAFT00000035128	SF3A1-201	2358	-	ENSLAFP00000024049	785 (aa)	-	G3U891
ENSLAFT00000000449	SF3A1-202	2379	-	ENSLAFP00000000382	793 (aa)	XP_003419113	G3SLR5

Gene Model

Click here to download ENSLAFG00000000448's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLAFG00000000448's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLAFG00000000448	SF3A1	98	62.038	ENSLAFG00000026032	-	98	62.038

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLAFG00000000448	SF3A1	100	98.865	ENSG00000099995	SF3A1	100	98.865	Homo_sapiens
ENSLAFG00000000448	SF3A1	100	83.648	ENSAPOG00000020465	sf3a1	99	85.294	Acanthochromis_polyacanthus
ENSLAFG00000000448	SF3A1	100	98.365	ENSAMEG00000007737	SF3A1	100	98.365	Ailuropoda_melanoleuca
ENSLAFG00000000448	SF3A1	100	84.654	ENSACIG00000020672	sf3a1	99	85.678	Amphilophus_citrinellus
ENSLAFG00000000448	SF3A1	100	83.375	ENSAOCG00000003060	sf3a1	99	85.294	Amphiprion_ocellaris
ENSLAFG00000000448	SF3A1	100	83.500	ENSAPEG00000010735	sf3a1	99	85.422	Amphiprion_percula
ENSLAFG00000000448	SF3A1	96	86.068	ENSATEG00000021201	sf3a1	98	85.733	Anabas_testudineus
ENSLAFG00000000448	SF3A1	95	94.320	ENSAPLG00000009057	SF3A1	99	93.290	Anas_platyrhynchos
ENSLAFG00000000448	SF3A1	100	86.207	ENSACAG00000009415	SF3A1	100	86.700	Anolis_carolinensis
ENSLAFG00000000448	SF3A1	100	99.117	ENSANAG00000032045	SF3A1	100	99.117	Aotus_nancymaae
ENSLAFG00000000448	SF3A1	100	84.731	ENSACLG00000012622	sf3a1	99	85.787	Astatotilapia_calliptera
ENSLAFG00000000448	SF3A1	99	83.059	ENSAMXG00000005382	sf3a1	98	84.735	Astyanax_mexicanus
ENSLAFG00000000448	SF3A1	100	98.865	ENSBTAG00000003390	SF3A1	100	98.865	Bos_taurus
ENSLAFG00000000448	SF3A1	84	43.447	WBGene00004188	prp-21	90	44.867	Caenorhabditis_elegans
ENSLAFG00000000448	SF3A1	100	98.991	ENSCJAG00000010370	SF3A1	100	98.991	Callithrix_jacchus
ENSLAFG00000000448	SF3A1	100	98.865	ENSCAFG00000012559	SF3A1	100	98.865	Canis_familiaris
ENSLAFG00000000448	SF3A1	100	98.865	ENSCAFG00020000838	SF3A1	100	98.865	Canis_lupus_dingo
ENSLAFG00000000448	SF3A1	100	98.739	ENSCHIG00000018642	SF3A1	100	98.739	Capra_hircus
ENSLAFG00000000448	SF3A1	100	99.117	ENSTSYG00000004739	SF3A1	100	99.117	Carlito_syrichta
ENSLAFG00000000448	SF3A1	94	80.908	ENSCAPG00000015414	SF3A1	98	80.908	Cavia_aperea
ENSLAFG00000000448	SF3A1	100	98.487	ENSCPOG00000014589	SF3A1	100	98.487	Cavia_porcellus
ENSLAFG00000000448	SF3A1	100	99.117	ENSCCAG00000032006	SF3A1	100	99.117	Cebus_capucinus
ENSLAFG00000000448	SF3A1	100	99.243	ENSCATG00000029241	SF3A1	100	99.243	Cercocebus_atys
ENSLAFG00000000448	SF3A1	100	97.982	ENSCLAG00000006508	SF3A1	100	97.982	Chinchilla_lanigera
ENSLAFG00000000448	SF3A1	100	99.117	ENSCSAG00000009470	SF3A1	100	99.117	Chlorocebus_sabaeus
ENSLAFG00000000448	SF3A1	61	100.000	ENSCHOG00000005201	SF3A1	69	100.000	Choloepus_hoffmanni
ENSLAFG00000000448	SF3A1	100	90.932	ENSCPBG00000007595	SF3A1	100	90.932	Chrysemys_picta_bellii
ENSLAFG00000000448	SF3A1	96	52.393	ENSCING00000008526	-	66	58.046	Ciona_intestinalis
ENSLAFG00000000448	SF3A1	96	51.742	ENSCSAVG00000005608	-	92	62.712	Ciona_savignyi
ENSLAFG00000000448	SF3A1	100	99.117	ENSCANG00000033564	SF3A1	100	99.117	Colobus_angolensis_palliatus
ENSLAFG00000000448	SF3A1	100	98.235	ENSCGRG00001008933	Sf3a1	100	98.235	Cricetulus_griseus_chok1gshd
ENSLAFG00000000448	SF3A1	100	98.235	ENSCGRG00000006127	Sf3a1	100	98.235	Cricetulus_griseus_crigri
ENSLAFG00000000448	SF3A1	100	81.784	ENSCSEG00000010792	sf3a1	99	82.179	Cynoglossus_semilaevis
ENSLAFG00000000448	SF3A1	100	83.019	ENSCVAG00000004560	sf3a1	98	84.245	Cyprinodon_variegatus
ENSLAFG00000000448	SF3A1	100	82.286	ENSDARG00000041887	sf3a1	97	84.876	Danio_rerio
ENSLAFG00000000448	SF3A1	100	98.491	ENSDNOG00000010629	SF3A1	100	98.491	Dasypus_novemcinctus
ENSLAFG00000000448	SF3A1	100	98.991	ENSDORG00000005613	Sf3a1	100	98.991	Dipodomys_ordii
ENSLAFG00000000448	SF3A1	83	60.387	FBgn0266917	Sf3a1	85	59.459	Drosophila_melanogaster
ENSLAFG00000000448	SF3A1	88	94.729	ENSETEG00000017194	SF3A1	100	94.872	Echinops_telfairi
ENSLAFG00000000448	SF3A1	98	66.223	ENSEBUG00000001285	sf3a1	96	67.037	Eptatretus_burgeri
ENSLAFG00000000448	SF3A1	100	98.991	ENSEASG00005010254	SF3A1	100	98.991	Equus_asinus_asinus
ENSLAFG00000000448	SF3A1	100	98.991	ENSECAG00000023962	SF3A1	100	98.991	Equus_caballus
ENSLAFG00000000448	SF3A1	73	95.082	ENSEEUG00000003159	SF3A1	83	95.082	Erinaceus_europaeus
ENSLAFG00000000448	SF3A1	100	82.456	ENSELUG00000022578	sf3a1	98	82.714	Esox_lucius
ENSLAFG00000000448	SF3A1	100	98.613	ENSFCAG00000011932	SF3A1	100	98.613	Felis_catus
ENSLAFG00000000448	SF3A1	95	93.386	ENSFALG00000006944	SF3A1	100	91.814	Ficedula_albicollis
ENSLAFG00000000448	SF3A1	100	98.487	ENSFDAG00000009560	SF3A1	100	98.487	Fukomys_damarensis
ENSLAFG00000000448	SF3A1	100	84.025	ENSFHEG00000010866	sf3a1	98	85.286	Fundulus_heteroclitus
ENSLAFG00000000448	SF3A1	100	81.234	ENSGMOG00000016024	sf3a1	99	80.740	Gadus_morhua
ENSLAFG00000000448	SF3A1	95	94.312	ENSGALG00000007937	SF3A1	100	92.317	Gallus_gallus
ENSLAFG00000000448	SF3A1	100	83.396	ENSGAFG00000009111	sf3a1	97	85.098	Gambusia_affinis
ENSLAFG00000000448	SF3A1	100	82.242	ENSGACG00000011893	sf3a1	97	83.377	Gasterosteus_aculeatus
ENSLAFG00000000448	SF3A1	96	91.196	ENSGAGG00000000762	SF3A1	99	91.196	Gopherus_agassizii
ENSLAFG00000000448	SF3A1	100	98.865	ENSGGOG00000012631	SF3A1	100	98.865	Gorilla_gorilla
ENSLAFG00000000448	SF3A1	100	84.731	ENSHBUG00000015795	sf3a1	99	85.787	Haplochromis_burtoni
ENSLAFG00000000448	SF3A1	100	98.739	ENSHGLG00000007907	SF3A1	100	98.739	Heterocephalus_glaber_female
ENSLAFG00000000448	SF3A1	100	98.739	ENSHGLG00100013799	SF3A1	100	98.739	Heterocephalus_glaber_male
ENSLAFG00000000448	SF3A1	100	80.629	ENSHCOG00000015423	sf3a1	99	80.903	Hippocampus_comes
ENSLAFG00000000448	SF3A1	96	82.422	ENSIPUG00000002470	sf3a1	98	83.073	Ictalurus_punctatus
ENSLAFG00000000448	SF3A1	100	98.865	ENSSTOG00000013892	SF3A1	100	98.865	Ictidomys_tridecemlineatus
ENSLAFG00000000448	SF3A1	100	98.615	ENSJJAG00000022566	Sf3a1	100	98.615	Jaculus_jaculus
ENSLAFG00000000448	SF3A1	100	82.767	ENSKMAG00000002400	sf3a1	98	84.766	Kryptolebias_marmoratus
ENSLAFG00000000448	SF3A1	100	82.642	ENSLBEG00000022974	sf3a1	99	83.226	Labrus_bergylta
ENSLAFG00000000448	SF3A1	100	86.826	ENSLACG00000003565	SF3A1	97	88.021	Latimeria_chalumnae
ENSLAFG00000000448	SF3A1	100	84.962	ENSLOCG00000008251	sf3a1	97	86.753	Lepisosteus_oculatus
ENSLAFG00000000448	SF3A1	100	98.991	ENSMFAG00000031979	SF3A1	100	98.991	Macaca_fascicularis
ENSLAFG00000000448	SF3A1	100	98.991	ENSMMUG00000005547	SF3A1	100	98.991	Macaca_mulatta
ENSLAFG00000000448	SF3A1	100	98.865	ENSMNEG00000037229	SF3A1	100	98.865	Macaca_nemestrina
ENSLAFG00000000448	SF3A1	100	99.117	ENSMLEG00000041908	SF3A1	100	99.117	Mandrillus_leucophaeus
ENSLAFG00000000448	SF3A1	97	85.770	ENSMAMG00000006460	sf3a1	97	85.899	Mastacembelus_armatus
ENSLAFG00000000448	SF3A1	100	84.731	ENSMZEG00005009633	sf3a1	99	85.787	Maylandia_zebra
ENSLAFG00000000448	SF3A1	95	94.312	ENSMGAG00000001330	SF3A1	99	93.282	Meleagris_gallopavo
ENSLAFG00000000448	SF3A1	92	94.672	ENSMAUG00000020317	Sf3a1	94	94.672	Mesocricetus_auratus
ENSLAFG00000000448	SF3A1	100	99.117	ENSMICG00000010038	SF3A1	100	99.117	Microcebus_murinus
ENSLAFG00000000448	SF3A1	100	98.361	ENSMOCG00000008438	Sf3a1	100	98.361	Microtus_ochrogaster
ENSLAFG00000000448	SF3A1	100	81.384	ENSMMOG00000015588	sf3a1	98	81.982	Mola_mola
ENSLAFG00000000448	SF3A1	100	97.478	ENSMODG00000009270	SF3A1	100	97.478	Monodelphis_domestica
ENSLAFG00000000448	SF3A1	100	84.131	ENSMALG00000000148	sf3a1	99	86.104	Monopterus_albus
ENSLAFG00000000448	SF3A1	100	97.856	MGP_CAROLIEiJ_G0016029	Sf3a1	100	97.856	Mus_caroli
ENSLAFG00000000448	SF3A1	100	97.856	ENSMUSG00000002129	Sf3a1	100	97.856	Mus_musculus
ENSLAFG00000000448	SF3A1	100	97.856	MGP_PahariEiJ_G0016862	Sf3a1	100	97.856	Mus_pahari
ENSLAFG00000000448	SF3A1	100	97.856	MGP_SPRETEiJ_G0016870	Sf3a1	100	97.856	Mus_spretus
ENSLAFG00000000448	SF3A1	100	98.865	ENSMPUG00000013144	SF3A1	100	98.865	Mustela_putorius_furo
ENSLAFG00000000448	SF3A1	100	98.739	ENSMLUG00000002139	SF3A1	100	98.739	Myotis_lucifugus
ENSLAFG00000000448	SF3A1	100	98.613	ENSNGAG00000016977	Sf3a1	100	98.613	Nannospalax_galili
ENSLAFG00000000448	SF3A1	100	84.145	ENSNBRG00000016642	sf3a1	96	87.220	Neolamprologus_brichardi
ENSLAFG00000000448	SF3A1	100	99.117	ENSNLEG00000003686	SF3A1	100	99.117	Nomascus_leucogenys
ENSLAFG00000000448	SF3A1	96	87.895	ENSMEUG00000008741	SF3A1	100	87.895	Notamacropus_eugenii
ENSLAFG00000000448	SF3A1	100	98.235	ENSOPRG00000016636	SF3A1	100	98.235	Ochotona_princeps
ENSLAFG00000000448	SF3A1	100	98.487	ENSODEG00000002571	SF3A1	100	98.487	Octodon_degus
ENSLAFG00000000448	SF3A1	100	84.625	ENSONIG00000010848	sf3a1	99	85.166	Oreochromis_niloticus
ENSLAFG00000000448	SF3A1	100	98.613	ENSOCUG00000007633	SF3A1	100	98.613	Oryctolagus_cuniculus
ENSLAFG00000000448	SF3A1	96	81.759	ENSORLG00000013050	sf3a1	99	83.311	Oryzias_latipes
ENSLAFG00000000448	SF3A1	99	80.253	ENSORLG00020003236	sf3a1	97	80.674	Oryzias_latipes_hni
ENSLAFG00000000448	SF3A1	100	82.138	ENSORLG00015017411	sf3a1	99	83.742	Oryzias_latipes_hsok
ENSLAFG00000000448	SF3A1	100	82.642	ENSOMEG00000013362	sf3a1	99	83.484	Oryzias_melastigma
ENSLAFG00000000448	SF3A1	100	98.865	ENSOGAG00000012931	SF3A1	100	98.865	Otolemur_garnettii
ENSLAFG00000000448	SF3A1	100	96.974	ENSOARG00000006849	SF3A1	100	96.974	Ovis_aries
ENSLAFG00000000448	SF3A1	100	97.856	ENSPPAG00000041790	SF3A1	100	97.856	Pan_paniscus
ENSLAFG00000000448	SF3A1	100	98.613	ENSPPRG00000004391	SF3A1	100	98.613	Panthera_pardus
ENSLAFG00000000448	SF3A1	97	98.575	ENSPTIG00000000844	SF3A1	100	98.575	Panthera_tigris_altaica
ENSLAFG00000000448	SF3A1	100	98.865	ENSPTRG00000014240	SF3A1	100	98.865	Pan_troglodytes
ENSLAFG00000000448	SF3A1	100	99.117	ENSPANG00000020772	SF3A1	100	99.117	Papio_anubis
ENSLAFG00000000448	SF3A1	83	93.407	ENSPSIG00000012803	SF3A1	96	94.162	Pelodiscus_sinensis
ENSLAFG00000000448	SF3A1	96	84.162	ENSPMGG00000023096	sf3a1	100	84.162	Periophthalmus_magnuspinnatus
ENSLAFG00000000448	SF3A1	100	98.487	ENSPEMG00000009494	Sf3a1	100	98.487	Peromyscus_maniculatus_bairdii
ENSLAFG00000000448	SF3A1	69	78.040	ENSPMAG00000007139	-	90	79.439	Petromyzon_marinus
ENSLAFG00000000448	SF3A1	100	97.604	ENSPCIG00000022692	SF3A1	100	97.604	Phascolarctos_cinereus
ENSLAFG00000000448	SF3A1	100	75.503	ENSPFOG00000016768	sf3a1	93	79.184	Poecilia_formosa
ENSLAFG00000000448	SF3A1	100	83.794	ENSPLAG00000017268	sf3a1	97	85.359	Poecilia_latipinna
ENSLAFG00000000448	SF3A1	84	86.295	ENSPMEG00000019811	sf3a1	98	85.542	Poecilia_mexicana
ENSLAFG00000000448	SF3A1	100	83.920	ENSPREG00000010347	sf3a1	97	85.752	Poecilia_reticulata
ENSLAFG00000000448	SF3A1	100	99.117	ENSPPYG00000011707	SF3A1	100	99.117	Pongo_abelii
ENSLAFG00000000448	SF3A1	57	100.000	ENSPCAG00000003266	SF3A1	57	100.000	Procavia_capensis
ENSLAFG00000000448	SF3A1	100	99.117	ENSPCOG00000026630	SF3A1	100	99.117	Propithecus_coquereli
ENSLAFG00000000448	SF3A1	100	94.325	ENSPVAG00000017719	SF3A1	100	94.192	Pteropus_vampyrus
ENSLAFG00000000448	SF3A1	100	84.606	ENSPNYG00000018706	sf3a1	99	85.659	Pundamilia_nyererei
ENSLAFG00000000448	SF3A1	97	84.596	ENSPNAG00000003721	sf3a1	99	84.596	Pygocentrus_nattereri
ENSLAFG00000000448	SF3A1	100	97.856	ENSRNOG00000005218	Sf3a1	100	97.856	Rattus_norvegicus
ENSLAFG00000000448	SF3A1	100	98.991	ENSRBIG00000032167	SF3A1	100	98.991	Rhinopithecus_bieti
ENSLAFG00000000448	SF3A1	100	98.991	ENSRROG00000044908	SF3A1	100	98.991	Rhinopithecus_roxellana
ENSLAFG00000000448	SF3A1	97	95.090	ENSSBOG00000021960	SF3A1	100	99.261	Saimiri_boliviensis_boliviensis
ENSLAFG00000000448	SF3A1	99	93.165	ENSSHAG00000003666	SF3A1	98	94.696	Sarcophilus_harrisii
ENSLAFG00000000448	SF3A1	100	83.500	ENSSFOG00015004579	sf3a1	99	85.385	Scleropages_formosus
ENSLAFG00000000448	SF3A1	100	81.761	ENSSMAG00000004275	sf3a1	97	83.007	Scophthalmus_maximus
ENSLAFG00000000448	SF3A1	100	83.899	ENSSDUG00000022219	sf3a1	99	84.655	Seriola_dumerili
ENSLAFG00000000448	SF3A1	100	83.899	ENSSLDG00000012642	sf3a1	99	84.655	Seriola_lalandi_dorsalis
ENSLAFG00000000448	SF3A1	97	95.337	ENSSARG00000005960	SF3A1	100	95.337	Sorex_araneus
ENSLAFG00000000448	SF3A1	96	91.969	ENSSPUG00000018863	SF3A1	100	91.418	Sphenodon_punctatus
ENSLAFG00000000448	SF3A1	100	84.528	ENSSPAG00000011856	sf3a1	99	85.166	Stegastes_partitus
ENSLAFG00000000448	SF3A1	100	98.991	ENSSSCG00000010002	SF3A1	100	98.991	Sus_scrofa
ENSLAFG00000000448	SF3A1	95	94.195	ENSTGUG00000010547	SF3A1	99	93.515	Taeniopygia_guttata
ENSLAFG00000000448	SF3A1	100	81.635	ENSTRUG00000006118	sf3a1	97	82.484	Takifugu_rubripes
ENSLAFG00000000448	SF3A1	63	88.506	ENSTNIG00000005713	sf3a1	89	87.356	Tetraodon_nigroviridis
ENSLAFG00000000448	SF3A1	100	91.677	ENSTBEG00000012771	SF3A1	100	91.677	Tupaia_belangeri
ENSLAFG00000000448	SF3A1	100	98.741	ENSTTRG00000001535	SF3A1	100	98.741	Tursiops_truncatus
ENSLAFG00000000448	SF3A1	99	97.840	ENSUAMG00000006750	SF3A1	99	97.840	Ursus_americanus
ENSLAFG00000000448	SF3A1	99	98.087	ENSUMAG00000016665	SF3A1	99	98.087	Ursus_maritimus
ENSLAFG00000000448	SF3A1	100	98.865	ENSVVUG00000003075	SF3A1	100	98.865	Vulpes_vulpes
ENSLAFG00000000448	SF3A1	100	87.072	ENSXETG00000016144	sf3a1	100	86.692	Xenopus_tropicalis
ENSLAFG00000000448	SF3A1	100	83.145	ENSXCOG00000015653	sf3a1	97	84.837	Xiphophorus_couchianus
ENSLAFG00000000448	SF3A1	100	83.270	ENSXMAG00000002753	sf3a1	97	84.967	Xiphophorus_maculatus