EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLAFG00000000572 (Gene tree)
Gene ID: -
Gene Symbol: CHD3
Alias: Mi-2a|Mi2-ALPHA|ZFH
Full Name: chromodomain helicase DNA binding protein 3
Gene Type: protein_coding
Species: Loxodonta_africana
Status: putative
Strand: Plus strand
Length: 18398 bases
Position: chrscaffold_47:11925700-11944097
Accession: 1918
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLAFP00000000480	ResIII	PF04851.15	1.5e-08	1	1
ENSLAFP00000020793	ResIII	PF04851.15	1.6e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLAFT00000000574	CHD3-201	5628	-	ENSLAFP00000000480	1876 (aa)	-	G3SLZ2
ENSLAFT00000033367	CHD3-202	5466	-	ENSLAFP00000020793	1822 (aa)	-	G3TYY5

Gene Model

Click here to download ENSLAFG00000000572's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLAFG00000000572's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLAFG00000000572	CHD3	86	84.834	ENSLAFG00000006348	CHD5	92	74.984
ENSLAFG00000000572	CHD3	94	68.063	ENSLAFG00000022842	-	97	66.186

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLAFG00000000572	CHD3	100	94.542	ENSG00000170004	CHD3	94	94.542	Homo_sapiens
ENSLAFG00000000572	CHD3	90	74.383	ENSAPOG00000005614	chd3	94	79.487	Acanthochromis_polyacanthus
ENSLAFG00000000572	CHD3	68	96.958	ENSAMEG00000003025	-	94	96.958	Ailuropoda_melanoleuca
ENSLAFG00000000572	CHD3	80	88.372	ENSACIG00000019671	chd3	98	88.372	Amphilophus_citrinellus
ENSLAFG00000000572	CHD3	79	85.368	ENSAOCG00000023784	chd3	99	80.000	Amphiprion_ocellaris
ENSLAFG00000000572	CHD3	89	82.435	ENSAPEG00000006341	chd3	93	72.690	Amphiprion_percula
ENSLAFG00000000572	CHD3	95	77.898	ENSATEG00000000848	chd3	95	75.677	Anabas_testudineus
ENSLAFG00000000572	CHD3	94	87.946	ENSACAG00000004276	CHD3	88	87.755	Anolis_carolinensis
ENSLAFG00000000572	CHD3	100	91.362	ENSANAG00000034323	CHD3	95	93.987	Aotus_nancymaae
ENSLAFG00000000572	CHD3	87	88.210	ENSACLG00000009222	chd3	91	83.995	Astatotilapia_calliptera
ENSLAFG00000000572	CHD3	100	94.427	ENSBTAG00000014377	CHD3	95	94.397	Bos_taurus
ENSLAFG00000000572	CHD3	100	94.383	ENSCJAG00000014766	CHD3	94	94.383	Callithrix_jacchus
ENSLAFG00000000572	CHD3	100	94.542	ENSCAFG00000016859	CHD3	94	94.542	Canis_familiaris
ENSLAFG00000000572	CHD3	95	94.098	ENSCAFG00020007422	CHD3	96	94.121	Canis_lupus_dingo
ENSLAFG00000000572	CHD3	100	94.330	ENSCHIG00000016737	CHD3	95	94.330	Capra_hircus
ENSLAFG00000000572	CHD3	100	94.277	ENSTSYG00000035658	CHD3	94	94.277	Carlito_syrichta
ENSLAFG00000000572	CHD3	100	90.885	ENSCAPG00000014864	CHD3	90	94.355	Cavia_aperea
ENSLAFG00000000572	CHD3	100	93.588	ENSCPOG00000022653	CHD3	94	93.588	Cavia_porcellus
ENSLAFG00000000572	CHD3	100	94.383	ENSCCAG00000034792	CHD3	94	94.383	Cebus_capucinus
ENSLAFG00000000572	CHD3	100	94.436	ENSCATG00000041717	CHD3	94	94.436	Cercocebus_atys
ENSLAFG00000000572	CHD3	99	93.955	ENSCLAG00000010523	CHD3	96	93.955	Chinchilla_lanigera
ENSLAFG00000000572	CHD3	100	94.636	ENSCSAG00000011122	CHD3	96	94.636	Chlorocebus_sabaeus
ENSLAFG00000000572	CHD3	90	85.276	ENSCPBG00000011966	CHD3	91	93.508	Chrysemys_picta_bellii
ENSLAFG00000000572	CHD3	100	94.383	ENSCANG00000037641	CHD3	94	94.383	Colobus_angolensis_palliatus
ENSLAFG00000000572	CHD3	99	93.429	ENSCGRG00001011306	Chd3	96	93.429	Cricetulus_griseus_chok1gshd
ENSLAFG00000000572	CHD3	90	98.529	ENSCGRG00000007878	Chd3	90	98.529	Cricetulus_griseus_crigri
ENSLAFG00000000572	CHD3	85	91.589	ENSCSEG00000004489	chd3	96	80.556	Cynoglossus_semilaevis
ENSLAFG00000000572	CHD3	88	82.329	ENSCVAG00000007293	chd3	95	83.673	Cyprinodon_variegatus
ENSLAFG00000000572	CHD3	85	94.286	ENSDARG00000021405	chd3	90	94.286	Danio_rerio
ENSLAFG00000000572	CHD3	100	80.337	ENSDNOG00000047846	CHD3	81	95.102	Dasypus_novemcinctus
ENSLAFG00000000572	CHD3	99	93.369	ENSDORG00000010713	Chd3	92	97.434	Dipodomys_ordii
ENSLAFG00000000572	CHD3	99	88.123	ENSETEG00000017733	CHD3	98	88.123	Echinops_telfairi
ENSLAFG00000000572	CHD3	57	77.666	ENSEBUG00000008310	chd3	95	72.079	Eptatretus_burgeri
ENSLAFG00000000572	CHD3	93	94.178	ENSEASG00005019360	CHD3	96	94.178	Equus_asinus_asinus
ENSLAFG00000000572	CHD3	93	94.178	ENSECAG00000010051	CHD3	96	94.178	Equus_caballus
ENSLAFG00000000572	CHD3	94	84.190	ENSEEUG00000015205	CHD3	90	84.190	Erinaceus_europaeus
ENSLAFG00000000572	CHD3	78	90.476	ENSELUG00000019499	chd3	99	90.476	Esox_lucius
ENSLAFG00000000572	CHD3	100	94.012	ENSFCAG00000009629	CHD3	92	94.012	Felis_catus
ENSLAFG00000000572	CHD3	100	91.627	ENSFDAG00000008220	CHD3	94	91.627	Fukomys_damarensis
ENSLAFG00000000572	CHD3	81	82.759	ENSGMOG00000013599	chd3	79	82.759	Gadus_morhua
ENSLAFG00000000572	CHD3	57	82.554	ENSGAFG00000004055	chd3	99	73.969	Gambusia_affinis
ENSLAFG00000000572	CHD3	91	76.977	ENSGACG00000019275	chd3	95	75.810	Gasterosteus_aculeatus
ENSLAFG00000000572	CHD3	75	87.110	ENSGAGG00000013164	CHD3	89	93.821	Gopherus_agassizii
ENSLAFG00000000572	CHD3	100	94.489	ENSGGOG00000013496	CHD3	94	94.489	Gorilla_gorilla
ENSLAFG00000000572	CHD3	100	93.959	ENSHGLG00000012017	CHD3	95	93.959	Heterocephalus_glaber_female
ENSLAFG00000000572	CHD3	89	89.967	ENSHGLG00100013902	CHD3	89	92.035	Heterocephalus_glaber_male
ENSLAFG00000000572	CHD3	93	76.355	ENSHCOG00000010170	chd3	95	71.355	Hippocampus_comes
ENSLAFG00000000572	CHD3	82	87.898	ENSIPUG00000003271	chd3	93	78.177	Ictalurus_punctatus
ENSLAFG00000000572	CHD3	100	94.330	ENSSTOG00000025907	CHD3	96	94.330	Ictidomys_tridecemlineatus
ENSLAFG00000000572	CHD3	100	93.217	ENSJJAG00000017633	Chd3	96	93.213	Jaculus_jaculus
ENSLAFG00000000572	CHD3	83	92.574	ENSKMAG00000019292	chd3	88	92.574	Kryptolebias_marmoratus
ENSLAFG00000000572	CHD3	92	88.938	ENSLBEG00000028485	chd3	91	88.938	Labrus_bergylta
ENSLAFG00000000572	CHD3	99	70.963	ENSLACG00000008031	CHD3	91	76.751	Latimeria_chalumnae
ENSLAFG00000000572	CHD3	94	80.210	ENSLOCG00000013965	chd3	93	75.851	Lepisosteus_oculatus
ENSLAFG00000000572	CHD3	100	94.383	ENSMFAG00000020113	CHD3	94	94.383	Macaca_fascicularis
ENSLAFG00000000572	CHD3	100	91.945	ENSMMUG00000022221	CHD3	95	91.481	Macaca_mulatta
ENSLAFG00000000572	CHD3	100	94.383	ENSMNEG00000001728	CHD3	95	93.429	Macaca_nemestrina
ENSLAFG00000000572	CHD3	100	94.436	ENSMLEG00000032249	CHD3	94	94.436	Mandrillus_leucophaeus
ENSLAFG00000000572	CHD3	86	77.704	ENSMAMG00000000564	chd3	99	73.669	Mastacembelus_armatus
ENSLAFG00000000572	CHD3	100	93.114	ENSMAUG00000013873	Chd3	91	94.363	Mesocricetus_auratus
ENSLAFG00000000572	CHD3	100	94.224	ENSMICG00000008741	CHD3	92	94.224	Microcebus_murinus
ENSLAFG00000000572	CHD3	99	93.362	ENSMOCG00000004848	Chd3	96	93.362	Microtus_ochrogaster
ENSLAFG00000000572	CHD3	97	73.344	ENSMMOG00000012699	chd3	99	72.842	Mola_mola
ENSLAFG00000000572	CHD3	93	89.588	ENSMODG00000007509	CHD3	91	93.906	Monodelphis_domestica
ENSLAFG00000000572	CHD3	100	93.220	MGP_CAROLIEiJ_G0016564	Chd3	98	91.644	Mus_caroli
ENSLAFG00000000572	CHD3	100	93.432	ENSMUSG00000018474	Chd3	98	91.857	Mus_musculus
ENSLAFG00000000572	CHD3	100	93.270	MGP_PahariEiJ_G0017695	Chd3	98	91.693	Mus_pahari
ENSLAFG00000000572	CHD3	100	93.326	MGP_SPRETEiJ_G0017400	Chd3	98	91.751	Mus_spretus
ENSLAFG00000000572	CHD3	83	98.265	ENSMPUG00000008861	CHD3	91	98.265	Mustela_putorius_furo
ENSLAFG00000000572	CHD3	100	93.114	ENSMLUG00000014643	-	94	93.114	Myotis_lucifugus
ENSLAFG00000000572	CHD3	100	93.482	ENSNGAG00000000773	Chd3	94	93.482	Nannospalax_galili
ENSLAFG00000000572	CHD3	90	74.780	ENSNBRG00000000636	chd3	98	74.781	Neolamprologus_brichardi
ENSLAFG00000000572	CHD3	100	91.875	ENSNLEG00000009770	CHD3	93	95.082	Nomascus_leucogenys
ENSLAFG00000000572	CHD3	83	95.918	ENSMEUG00000005852	CHD3	81	95.918	Notamacropus_eugenii
ENSLAFG00000000572	CHD3	95	92.514	ENSOPRG00000011069	CHD3	91	96.536	Ochotona_princeps
ENSLAFG00000000572	CHD3	100	93.641	ENSODEG00000017785	CHD3	95	93.641	Octodon_degus
ENSLAFG00000000572	CHD3	89	84.082	ENSONIG00000009292	chd3	94	78.742	Oreochromis_niloticus
ENSLAFG00000000572	CHD3	99	88.912	ENSOCUG00000029299	CHD3	92	92.734	Oryctolagus_cuniculus
ENSLAFG00000000572	CHD3	86	70.321	ENSORLG00000007107	chd3	93	70.115	Oryzias_latipes
ENSLAFG00000000572	CHD3	55	82.325	ENSORLG00020008387	chd3	91	82.562	Oryzias_latipes_hni
ENSLAFG00000000572	CHD3	70	84.801	ENSOMEG00000013691	chd3	99	75.468	Oryzias_melastigma
ENSLAFG00000000572	CHD3	100	93.853	ENSOGAG00000003216	CHD3	96	93.853	Otolemur_garnettii
ENSLAFG00000000572	CHD3	100	92.153	ENSOARG00000017855	CHD3	94	92.153	Ovis_aries
ENSLAFG00000000572	CHD3	100	92.461	ENSPPAG00000032886	CHD3	94	92.461	Pan_paniscus
ENSLAFG00000000572	CHD3	100	94.171	ENSPPRG00000000626	CHD3	94	94.171	Panthera_pardus
ENSLAFG00000000572	CHD3	100	94.542	ENSPTRG00000008714	CHD3	94	94.542	Pan_troglodytes
ENSLAFG00000000572	CHD3	100	94.436	ENSPANG00000023938	CHD3	94	94.436	Papio_anubis
ENSLAFG00000000572	CHD3	95	80.165	ENSPKIG00000006305	chd3	96	79.201	Paramormyrops_kingsleyae
ENSLAFG00000000572	CHD3	53	94.584	ENSPSIG00000010177	CHD3	90	94.584	Pelodiscus_sinensis
ENSLAFG00000000572	CHD3	99	92.952	ENSPEMG00000014262	Chd3	95	92.952	Peromyscus_maniculatus_bairdii
ENSLAFG00000000572	CHD3	98	93.320	ENSPCIG00000005442	CHD3	99	95.181	Phascolarctos_cinereus
ENSLAFG00000000572	CHD3	88	84.362	ENSPFOG00000012464	chd3	83	83.740	Poecilia_formosa
ENSLAFG00000000572	CHD3	91	83.673	ENSPLAG00000002887	chd3	96	83.673	Poecilia_latipinna
ENSLAFG00000000572	CHD3	55	82.246	ENSPMEG00000016725	chd3	90	83.253	Poecilia_mexicana
ENSLAFG00000000572	CHD3	87	88.444	ENSPREG00000011044	chd3	91	83.916	Poecilia_reticulata
ENSLAFG00000000572	CHD3	98	91.180	ENSPPYG00000007940	CHD3	94	91.180	Pongo_abelii
ENSLAFG00000000572	CHD3	96	98.202	ENSPCAG00000004350	CHD3	92	98.202	Procavia_capensis
ENSLAFG00000000572	CHD3	100	94.224	ENSPCOG00000020952	CHD3	95	94.174	Propithecus_coquereli
ENSLAFG00000000572	CHD3	86	97.217	ENSPVAG00000016344	CHD3	83	97.217	Pteropus_vampyrus
ENSLAFG00000000572	CHD3	88	83.951	ENSPNAG00000020393	chd3	96	82.449	Pygocentrus_nattereri
ENSLAFG00000000572	CHD3	93	91.511	ENSRNOG00000009722	Chd3	95	91.511	Rattus_norvegicus
ENSLAFG00000000572	CHD3	96	96.275	ENSRBIG00000033562	CHD3	91	96.275	Rhinopithecus_bieti
ENSLAFG00000000572	CHD3	100	92.846	ENSRROG00000029554	CHD3	96	92.360	Rhinopithecus_roxellana
ENSLAFG00000000572	CHD3	100	94.436	ENSSBOG00000020719	CHD3	94	94.436	Saimiri_boliviensis_boliviensis
ENSLAFG00000000572	CHD3	99	89.776	ENSSHAG00000014412	CHD3	91	93.842	Sarcophilus_harrisii
ENSLAFG00000000572	CHD3	88	78.775	ENSSFOG00015023123	chd3	91	76.147	Scleropages_formosus
ENSLAFG00000000572	CHD3	77	91.358	ENSSMAG00000006451	chd3	99	73.563	Scophthalmus_maximus
ENSLAFG00000000572	CHD3	53	82.733	ENSSDUG00000005792	chd3	95	73.845	Seriola_dumerili
ENSLAFG00000000572	CHD3	89	82.516	ENSSPAG00000013694	chd3	97	87.209	Stegastes_partitus
ENSLAFG00000000572	CHD3	100	94.427	ENSSSCG00000021363	CHD3	99	93.861	Sus_scrofa
ENSLAFG00000000572	CHD3	78	75.450	ENSTRUG00000014990	chd3	93	72.675	Takifugu_rubripes
ENSLAFG00000000572	CHD3	94	77.911	ENSTNIG00000012998	chd3	92	78.023	Tetraodon_nigroviridis
ENSLAFG00000000572	CHD3	59	97.608	ENSTBEG00000011454	-	62	97.608	Tupaia_belangeri
ENSLAFG00000000572	CHD3	95	98.195	ENSTTRG00000010295	CHD3	88	98.195	Tursiops_truncatus
ENSLAFG00000000572	CHD3	93	92.991	ENSUAMG00000005475	CHD3	95	92.991	Ursus_americanus
ENSLAFG00000000572	CHD3	55	100.000	ENSVPAG00000010794	-	58	100.000	Vicugna_pacos
ENSLAFG00000000572	CHD3	99	94.539	ENSVVUG00000028011	CHD3	94	94.098	Vulpes_vulpes
ENSLAFG00000000572	CHD3	94	78.184	ENSXETG00000012991	chd3	84	78.121	Xenopus_tropicalis
ENSLAFG00000000572	CHD3	62	72.099	ENSXCOG00000000809	chd3	98	72.925	Xiphophorus_couchianus
ENSLAFG00000000572	CHD3	79	86.127	ENSXMAG00000016035	chd3	99	86.127	Xiphophorus_maculatus