EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLAFG00000000896 (Gene tree)
Gene ID: -
Gene Symbol: SMARCA1
Alias: ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SWI|hSNF2L
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Loxodonta_africana
Status: putative
Strand: Plus strand
Length: 63695 bases
Position: chrscaffold_32:879433-943127
Accession: 11097
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLAFP00000000751	ResIII	PF04851.15	2.2e-12	1	1
ENSLAFP00000026671	ResIII	PF04851.15	2.2e-12	1	1
ENSLAFP00000000751	DEAD	PF00270.29	2.7e-07	1	1
ENSLAFP00000026671	DEAD	PF00270.29	2.8e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLAFT00000000898	SMARCA1-202	2976	-	ENSLAFP00000000751	991 (aa)	-	G3SMK0
ENSLAFT00000029326	SMARCA1-201	3018	-	ENSLAFP00000026671	1005 (aa)	-	G3UFR3

Gene Model

Click here to download ENSLAFG00000000896's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLAFG00000000896's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLAFG00000000896	SMARCA1	54	42.021	ENSLAFG00000023183	CHD1	50	42.884
ENSLAFG00000000896	SMARCA1	60	42.376	ENSLAFG00000016885	-	71	42.233
ENSLAFG00000000896	SMARCA1	50	33.692	ENSLAFG00000015315	-	66	33.692
ENSLAFG00000000896	SMARCA1	53	47.809	ENSLAFG00000007049	HELLS	66	47.809
ENSLAFG00000000896	SMARCA1	57	43.696	ENSLAFG00000018136	CHD1L	65	43.696
ENSLAFG00000000896	SMARCA1	98	84.701	ENSLAFG00000007795	SMARCA5	93	84.701

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLAFG00000000896	SMARCA1	100	96.720	ENSG00000102038	SMARCA1	95	96.720	Homo_sapiens
ENSLAFG00000000896	SMARCA1	98	82.485	ENSAPOG00000016035	smarca5	99	82.935	Acanthochromis_polyacanthus
ENSLAFG00000000896	SMARCA1	100	95.187	ENSAMEG00000015218	SMARCA1	95	95.187	Ailuropoda_melanoleuca
ENSLAFG00000000896	SMARCA1	90	83.499	ENSACIG00000016982	smarca5	99	83.594	Amphilophus_citrinellus
ENSLAFG00000000896	SMARCA1	98	82.485	ENSAOCG00000015578	smarca5	95	81.526	Amphiprion_ocellaris
ENSLAFG00000000896	SMARCA1	98	82.485	ENSAPEG00000011117	smarca5	99	83.373	Amphiprion_percula
ENSLAFG00000000896	SMARCA1	98	82.085	ENSATEG00000012894	smarca5	96	81.076	Anabas_testudineus
ENSLAFG00000000896	SMARCA1	98	92.206	ENSAPLG00000013149	SMARCA1	100	92.206	Anas_platyrhynchos
ENSLAFG00000000896	SMARCA1	100	90.855	ENSACAG00000011376	SMARCA1	95	90.855	Anolis_carolinensis
ENSLAFG00000000896	SMARCA1	99	91.542	ENSANAG00000023098	SMARCA1	94	91.551	Aotus_nancymaae
ENSLAFG00000000896	SMARCA1	98	82.490	ENSACLG00000025356	smarca5	96	81.393	Astatotilapia_calliptera
ENSLAFG00000000896	SMARCA1	93	88.261	ENSAMXG00000011227	smarca1	99	90.061	Astyanax_mexicanus
ENSLAFG00000000896	SMARCA1	98	82.875	ENSAMXG00000005709	smarca5	94	82.875	Astyanax_mexicanus
ENSLAFG00000000896	SMARCA1	99	96.016	ENSBTAG00000002292	SMARCA1	94	94.874	Bos_taurus
ENSLAFG00000000896	SMARCA1	97	63.303	WBGene00002169	isw-1	96	62.755	Caenorhabditis_elegans
ENSLAFG00000000896	SMARCA1	100	96.521	ENSCJAG00000002868	SMARCA1	95	96.521	Callithrix_jacchus
ENSLAFG00000000896	SMARCA1	99	86.399	ENSCAFG00000018673	SMARCA1	99	87.647	Canis_familiaris
ENSLAFG00000000896	SMARCA1	100	96.720	ENSCAFG00020001751	SMARCA1	95	96.720	Canis_lupus_dingo
ENSLAFG00000000896	SMARCA1	100	96.223	ENSCHIG00000009837	SMARCA1	94	96.223	Capra_hircus
ENSLAFG00000000896	SMARCA1	100	96.521	ENSTSYG00000004240	SMARCA1	99	96.468	Carlito_syrichta
ENSLAFG00000000896	SMARCA1	100	96.322	ENSCPOG00000013601	SMARCA1	95	96.322	Cavia_porcellus
ENSLAFG00000000896	SMARCA1	99	93.333	ENSCCAG00000030817	SMARCA1	94	93.340	Cebus_capucinus
ENSLAFG00000000896	SMARCA1	100	96.266	ENSCATG00000015921	SMARCA1	94	96.643	Cercocebus_atys
ENSLAFG00000000896	SMARCA1	100	95.924	ENSCLAG00000002171	SMARCA1	95	95.924	Chinchilla_lanigera
ENSLAFG00000000896	SMARCA1	100	96.720	ENSCSAG00000008460	SMARCA1	95	96.720	Chlorocebus_sabaeus
ENSLAFG00000000896	SMARCA1	100	91.849	ENSCPBG00000001146	SMARCA1	94	91.849	Chrysemys_picta_bellii
ENSLAFG00000000896	SMARCA1	97	73.375	ENSCING00000004110	swi/snf	98	72.317	Ciona_intestinalis
ENSLAFG00000000896	SMARCA1	98	72.396	ENSCSAVG00000004620	-	100	73.608	Ciona_savignyi
ENSLAFG00000000896	SMARCA1	100	96.620	ENSCANG00000007183	SMARCA1	95	96.620	Colobus_angolensis_palliatus
ENSLAFG00000000896	SMARCA1	99	94.726	ENSCGRG00001010776	Smarca1	94	94.732	Cricetulus_griseus_chok1gshd
ENSLAFG00000000896	SMARCA1	100	94.551	ENSCGRG00000015301	Smarca1	99	94.551	Cricetulus_griseus_crigri
ENSLAFG00000000896	SMARCA1	98	82.485	ENSCSEG00000000328	smarca5	95	81.727	Cynoglossus_semilaevis
ENSLAFG00000000896	SMARCA1	98	81.883	ENSCVAG00000008668	smarca5	99	82.921	Cyprinodon_variegatus
ENSLAFG00000000896	SMARCA1	99	84.515	ENSDARG00000012776	smarca1	98	84.102	Danio_rerio
ENSLAFG00000000896	SMARCA1	99	80.777	ENSDARG00000052348	smarca5	96	80.777	Danio_rerio
ENSLAFG00000000896	SMARCA1	99	95.228	ENSDNOG00000004315	SMARCA1	94	95.727	Dasypus_novemcinctus
ENSLAFG00000000896	SMARCA1	100	94.955	ENSDORG00000009270	Smarca1	95	94.955	Dipodomys_ordii
ENSLAFG00000000896	SMARCA1	96	73.569	FBgn0011604	Iswi	98	71.863	Drosophila_melanogaster
ENSLAFG00000000896	SMARCA1	83	92.857	ENSETEG00000017426	SMARCA1	86	92.857	Echinops_telfairi
ENSLAFG00000000896	SMARCA1	98	80.406	ENSEBUG00000001239	smarca5	96	80.406	Eptatretus_burgeri
ENSLAFG00000000896	SMARCA1	99	92.441	ENSEASG00005008218	SMARCA1	100	92.060	Equus_asinus_asinus
ENSLAFG00000000896	SMARCA1	100	96.620	ENSECAG00000012106	SMARCA1	94	96.620	Equus_caballus
ENSLAFG00000000896	SMARCA1	81	96.689	ENSEEUG00000014927	SMARCA1	83	96.689	Erinaceus_europaeus
ENSLAFG00000000896	SMARCA1	99	85.487	ENSELUG00000010515	smarca1	98	85.714	Esox_lucius
ENSLAFG00000000896	SMARCA1	100	96.521	ENSFCAG00000018496	SMARCA1	95	96.521	Felis_catus
ENSLAFG00000000896	SMARCA1	92	92.350	ENSFALG00000000209	SMARCA1	98	93.085	Ficedula_albicollis
ENSLAFG00000000896	SMARCA1	100	94.616	ENSFDAG00000009818	SMARCA1	98	94.616	Fukomys_damarensis
ENSLAFG00000000896	SMARCA1	98	82.186	ENSFHEG00000007687	smarca5	91	84.678	Fundulus_heteroclitus
ENSLAFG00000000896	SMARCA1	98	91.727	ENSGALG00000008431	SMARCA1	97	91.845	Gallus_gallus
ENSLAFG00000000896	SMARCA1	98	82.287	ENSGAFG00000017731	smarca5	95	81.727	Gambusia_affinis
ENSLAFG00000000896	SMARCA1	97	92.894	ENSGAGG00000023575	SMARCA1	99	92.894	Gopherus_agassizii
ENSLAFG00000000896	SMARCA1	74	92.000	ENSGGOG00000012841	-	95	92.000	Gorilla_gorilla
ENSLAFG00000000896	SMARCA1	99	95.314	ENSHGLG00000003080	SMARCA1	95	95.129	Heterocephalus_glaber_female
ENSLAFG00000000896	SMARCA1	99	95.604	ENSHGLG00100001102	SMARCA1	100	95.604	Heterocephalus_glaber_male
ENSLAFG00000000896	SMARCA1	98	82.317	ENSHCOG00000005458	smarca5	96	81.175	Hippocampus_comes
ENSLAFG00000000896	SMARCA1	99	81.754	ENSIPUG00000005229	SMARCA5	97	81.754	Ictalurus_punctatus
ENSLAFG00000000896	SMARCA1	99	86.327	ENSIPUG00000016905	Smarca1	99	86.193	Ictalurus_punctatus
ENSLAFG00000000896	SMARCA1	100	96.421	ENSSTOG00000014524	SMARCA1	94	97.428	Ictidomys_tridecemlineatus
ENSLAFG00000000896	SMARCA1	100	95.924	ENSJJAG00000002593	Smarca1	95	95.924	Jaculus_jaculus
ENSLAFG00000000896	SMARCA1	98	82.520	ENSKMAG00000003777	smarca5	95	81.827	Kryptolebias_marmoratus
ENSLAFG00000000896	SMARCA1	99	81.426	ENSLBEG00000018112	smarca5	95	81.426	Labrus_bergylta
ENSLAFG00000000896	SMARCA1	95	82.303	ENSLBEG00000013295	SMARCA1	100	84.324	Labrus_bergylta
ENSLAFG00000000896	SMARCA1	100	89.861	ENSLACG00000016697	SMARCA1	98	89.861	Latimeria_chalumnae
ENSLAFG00000000896	SMARCA1	100	88.083	ENSLOCG00000014591	smarca1	97	88.083	Lepisosteus_oculatus
ENSLAFG00000000896	SMARCA1	100	96.720	ENSMFAG00000002117	SMARCA1	98	96.468	Macaca_fascicularis
ENSLAFG00000000896	SMARCA1	100	96.266	ENSMMUG00000008818	SMARCA1	99	96.670	Macaca_mulatta
ENSLAFG00000000896	SMARCA1	100	96.468	ENSMNEG00000041768	SMARCA1	98	96.468	Macaca_nemestrina
ENSLAFG00000000896	SMARCA1	100	96.720	ENSMLEG00000043198	SMARCA1	95	96.720	Mandrillus_leucophaeus
ENSLAFG00000000896	SMARCA1	98	82.389	ENSMAMG00000014294	smarca5	95	81.827	Mastacembelus_armatus
ENSLAFG00000000896	SMARCA1	98	82.490	ENSMZEG00005009369	smarca5	96	81.393	Maylandia_zebra
ENSLAFG00000000896	SMARCA1	100	90.373	ENSMGAG00000007042	SMARCA1	99	90.373	Meleagris_gallopavo
ENSLAFG00000000896	SMARCA1	99	95.354	ENSMAUG00000008133	Smarca1	94	95.626	Mesocricetus_auratus
ENSLAFG00000000896	SMARCA1	100	96.819	ENSMICG00000015768	SMARCA1	95	96.819	Microcebus_murinus
ENSLAFG00000000896	SMARCA1	99	95.513	ENSMOCG00000009464	Smarca1	95	95.328	Microtus_ochrogaster
ENSLAFG00000000896	SMARCA1	99	80.020	ENSMMOG00000005547	smarca5	99	80.020	Mola_mola
ENSLAFG00000000896	SMARCA1	99	91.641	ENSMODG00000013187	-	96	91.054	Monodelphis_domestica
ENSLAFG00000000896	SMARCA1	98	82.215	ENSMALG00000002081	smarca5	97	81.800	Monopterus_albus
ENSLAFG00000000896	SMARCA1	100	95.825	MGP_CAROLIEiJ_G0033034	Smarca1	95	95.825	Mus_caroli
ENSLAFG00000000896	SMARCA1	100	95.825	ENSMUSG00000031099	Smarca1	95	95.825	Mus_musculus
ENSLAFG00000000896	SMARCA1	100	95.626	MGP_PahariEiJ_G0031579	Smarca1	95	95.626	Mus_pahari
ENSLAFG00000000896	SMARCA1	100	95.924	MGP_SPRETEiJ_G0034192	Smarca1	95	95.924	Mus_spretus
ENSLAFG00000000896	SMARCA1	100	95.285	ENSMPUG00000017423	SMARCA1	89	95.285	Mustela_putorius_furo
ENSLAFG00000000896	SMARCA1	100	93.627	ENSMLUG00000029614	SMARCA1	95	93.627	Myotis_lucifugus
ENSLAFG00000000896	SMARCA1	100	96.367	ENSNGAG00000006492	Smarca1	94	96.643	Nannospalax_galili
ENSLAFG00000000896	SMARCA1	98	82.490	ENSNBRG00000004463	smarca5	99	81.928	Neolamprologus_brichardi
ENSLAFG00000000896	SMARCA1	100	95.560	ENSNLEG00000015179	SMARCA1	99	95.560	Nomascus_leucogenys
ENSLAFG00000000896	SMARCA1	96	81.230	ENSMEUG00000008819	SMARCA1	100	81.524	Notamacropus_eugenii
ENSLAFG00000000896	SMARCA1	100	94.118	ENSODEG00000012163	SMARCA1	95	94.118	Octodon_degus
ENSLAFG00000000896	SMARCA1	98	82.490	ENSONIG00000009993	smarca5	96	81.393	Oreochromis_niloticus
ENSLAFG00000000896	SMARCA1	97	93.203	ENSOANG00000002862	SMARCA1	99	93.203	Ornithorhynchus_anatinus
ENSLAFG00000000896	SMARCA1	99	95.713	ENSOCUG00000001047	SMARCA1	95	95.527	Oryctolagus_cuniculus
ENSLAFG00000000896	SMARCA1	98	82.520	ENSORLG00000021998	smarca5	96	81.375	Oryzias_latipes
ENSLAFG00000000896	SMARCA1	98	82.520	ENSORLG00020017679	smarca5	95	81.827	Oryzias_latipes_hni
ENSLAFG00000000896	SMARCA1	98	82.520	ENSORLG00015017210	smarca5	96	81.275	Oryzias_latipes_hsok
ENSLAFG00000000896	SMARCA1	98	82.520	ENSOMEG00000000086	smarca5	96	81.275	Oryzias_melastigma
ENSLAFG00000000896	SMARCA1	99	95.291	ENSOGAG00000004399	SMARCA1	94	95.276	Otolemur_garnettii
ENSLAFG00000000896	SMARCA1	100	94.995	ENSOARG00000014638	SMARCA1	100	96.552	Ovis_aries
ENSLAFG00000000896	SMARCA1	100	96.720	ENSPPAG00000034647	SMARCA1	95	96.720	Pan_paniscus
ENSLAFG00000000896	SMARCA1	100	96.620	ENSPPRG00000008929	SMARCA1	95	96.620	Panthera_pardus
ENSLAFG00000000896	SMARCA1	100	94.526	ENSPTIG00000000915	SMARCA1	98	94.526	Panthera_tigris_altaica
ENSLAFG00000000896	SMARCA1	100	96.720	ENSPTRG00000049876	SMARCA1	94	96.643	Pan_troglodytes
ENSLAFG00000000896	SMARCA1	100	96.720	ENSPANG00000003871	SMARCA1	95	96.720	Papio_anubis
ENSLAFG00000000896	SMARCA1	96	86.848	ENSPKIG00000013411	smarca1	97	86.848	Paramormyrops_kingsleyae
ENSLAFG00000000896	SMARCA1	100	90.570	ENSPSIG00000010101	SMARCA1	99	92.585	Pelodiscus_sinensis
ENSLAFG00000000896	SMARCA1	99	95.956	ENSPEMG00000017503	Smarca1	94	96.134	Peromyscus_maniculatus_bairdii
ENSLAFG00000000896	SMARCA1	100	91.650	ENSPCIG00000015460	SMARCA1	98	91.650	Phascolarctos_cinereus
ENSLAFG00000000896	SMARCA1	98	82.520	ENSPFOG00000007649	smarca5	95	81.727	Poecilia_formosa
ENSLAFG00000000896	SMARCA1	98	82.520	ENSPLAG00000003363	smarca5	95	81.727	Poecilia_latipinna
ENSLAFG00000000896	SMARCA1	98	82.419	ENSPMEG00000019849	smarca5	95	81.627	Poecilia_mexicana
ENSLAFG00000000896	SMARCA1	98	82.419	ENSPREG00000023250	smarca5	95	81.627	Poecilia_reticulata
ENSLAFG00000000896	SMARCA1	99	93.831	ENSPPYG00000020703	SMARCA1	95	93.837	Pongo_abelii
ENSLAFG00000000896	SMARCA1	82	90.909	ENSPCOG00000020722	SMARCA1	93	92.868	Propithecus_coquereli
ENSLAFG00000000896	SMARCA1	94	94.020	ENSPVAG00000003805	SMARCA1	89	94.020	Pteropus_vampyrus
ENSLAFG00000000896	SMARCA1	60	83.514	ENSPNYG00000012299	smarca5	90	82.011	Pundamilia_nyererei
ENSLAFG00000000896	SMARCA1	100	95.427	ENSRNOG00000003762	Smarca1	95	95.427	Rattus_norvegicus
ENSLAFG00000000896	SMARCA1	100	96.620	ENSRROG00000034167	SMARCA1	95	96.620	Rhinopithecus_roxellana
ENSLAFG00000000896	SMARCA1	100	95.481	ENSSBOG00000020641	SMARCA1	100	97.059	Saimiri_boliviensis_boliviensis
ENSLAFG00000000896	SMARCA1	97	86.317	ENSSHAG00000013518	SMARCA1	99	86.317	Sarcophilus_harrisii
ENSLAFG00000000896	SMARCA1	99	81.263	ENSSFOG00015016794	smarca5	99	82.766	Scleropages_formosus
ENSLAFG00000000896	SMARCA1	99	86.667	ENSSFOG00015009043	smarca1	98	86.667	Scleropages_formosus
ENSLAFG00000000896	SMARCA1	99	81.370	ENSSMAG00000004801	smarca5	95	81.370	Scophthalmus_maximus
ENSLAFG00000000896	SMARCA1	98	82.085	ENSSDUG00000020690	smarca5	96	81.526	Seriola_dumerili
ENSLAFG00000000896	SMARCA1	98	82.085	ENSSLDG00000025190	smarca5	96	81.526	Seriola_lalandi_dorsalis
ENSLAFG00000000896	SMARCA1	83	97.163	ENSSARG00000000842	SMARCA1	84	97.163	Sorex_araneus
ENSLAFG00000000896	SMARCA1	100	90.414	ENSSPUG00000000590	SMARCA1	95	90.414	Sphenodon_punctatus
ENSLAFG00000000896	SMARCA1	98	82.085	ENSSPAG00000002894	smarca5	97	83.370	Stegastes_partitus
ENSLAFG00000000896	SMARCA1	99	96.041	ENSSSCG00000012649	SMARCA1	96	95.582	Sus_scrofa
ENSLAFG00000000896	SMARCA1	98	91.802	ENSTGUG00000003899	-	100	91.802	Taeniopygia_guttata
ENSLAFG00000000896	SMARCA1	98	82.186	ENSTRUG00000014094	smarca5	96	81.175	Takifugu_rubripes
ENSLAFG00000000896	SMARCA1	98	81.466	ENSTNIG00000017717	smarca5	94	80.622	Tetraodon_nigroviridis
ENSLAFG00000000896	SMARCA1	91	94.414	ENSTBEG00000014973	SMARCA1	91	94.801	Tupaia_belangeri
ENSLAFG00000000896	SMARCA1	99	91.775	ENSTTRG00000006168	SMARCA1	100	91.675	Tursiops_truncatus
ENSLAFG00000000896	SMARCA1	100	96.223	ENSUAMG00000020201	SMARCA1	95	96.223	Ursus_americanus
ENSLAFG00000000896	SMARCA1	100	91.726	ENSUMAG00000004073	SMARCA1	97	96.394	Ursus_maritimus
ENSLAFG00000000896	SMARCA1	78	97.585	ENSVPAG00000010492	-	80	97.585	Vicugna_pacos
ENSLAFG00000000896	SMARCA1	100	96.620	ENSVVUG00000008878	SMARCA1	100	96.373	Vulpes_vulpes
ENSLAFG00000000896	SMARCA1	99	88.523	ENSXETG00000001526	smarca1	99	88.523	Xenopus_tropicalis
ENSLAFG00000000896	SMARCA1	98	82.186	ENSXCOG00000011170	smarca5	98	81.627	Xiphophorus_couchianus
ENSLAFG00000000896	SMARCA1	98	82.186	ENSXMAG00000009678	smarca5	98	83.261	Xiphophorus_maculatus