EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLAFG00000001261 (Gene tree)
Gene ID: -
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Loxodonta_africana
Status: putative
Strand: Minus strand
Length: 234110 bases
Position: chrscaffold_47:5214722-5448831
Accession: 100661745
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLAFP00000001064	EST1	PF10374.9	3.2e-15	1	1
ENSLAFP00000020643	EST1	PF10374.9	3.3e-15	1	1
ENSLAFP00000020643	EST1_DNA_bind	PF10373.9	8.2e-61	1	1
ENSLAFP00000001064	EST1_DNA_bind	PF10373.9	1.3e-59	1	1
ENSLAFP00000001064	PIN_4	PF13638.6	4.2e-21	1	1
ENSLAFP00000020643	PIN_4	PF13638.6	5.3e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLAFT00000030924	SMG6-201	4266	-	ENSLAFP00000020643	1421 (aa)	-	G3TYI5
ENSLAFT00000001263	SMG6-202	4257	-	ENSLAFP00000001064	1419 (aa)	XP_003416865	G3SNA0

Gene Model

Click here to download ENSLAFG00000001261's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLAFG00000001261's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLAFG00000001261	SMG6	100	92.319	ENSG00000070366	SMG6	100	97.260	Homo_sapiens
ENSLAFG00000001261	SMG6	100	93.023	ENSAMEG00000007632	SMG6	100	93.023	Ailuropoda_melanoleuca
ENSLAFG00000001261	SMG6	71	59.141	ENSAOCG00000002630	smg6	74	54.419	Amphiprion_ocellaris
ENSLAFG00000001261	SMG6	86	53.106	ENSAPEG00000019101	smg6	74	54.574	Amphiprion_percula
ENSLAFG00000001261	SMG6	83	54.496	ENSATEG00000006483	smg6	73	54.292	Anabas_testudineus
ENSLAFG00000001261	SMG6	87	56.806	ENSACAG00000011783	SMG6	99	58.216	Anolis_carolinensis
ENSLAFG00000001261	SMG6	100	92.812	ENSANAG00000035760	SMG6	100	92.812	Aotus_nancymaae
ENSLAFG00000001261	SMG6	71	58.706	ENSACLG00000005288	smg6	83	53.120	Astatotilapia_calliptera
ENSLAFG00000001261	SMG6	68	62.664	ENSAMXG00000017326	smg6	99	49.653	Astyanax_mexicanus
ENSLAFG00000001261	SMG6	100	92.319	ENSBTAG00000000267	SMG6	100	92.319	Bos_taurus
ENSLAFG00000001261	SMG6	100	92.178	ENSCJAG00000001820	SMG6	100	92.178	Callithrix_jacchus
ENSLAFG00000001261	SMG6	100	93.023	ENSCAFG00000019260	SMG6	100	93.023	Canis_familiaris
ENSLAFG00000001261	SMG6	100	93.023	ENSCAFG00020009770	SMG6	100	93.023	Canis_lupus_dingo
ENSLAFG00000001261	SMG6	100	91.755	ENSCHIG00000021998	SMG6	100	91.755	Capra_hircus
ENSLAFG00000001261	SMG6	100	92.530	ENSTSYG00000003406	SMG6	100	96.673	Carlito_syrichta
ENSLAFG00000001261	SMG6	98	76.906	ENSCAPG00000016197	SMG6	99	82.436	Cavia_aperea
ENSLAFG00000001261	SMG6	100	90.563	ENSCPOG00000014878	SMG6	97	93.860	Cavia_porcellus
ENSLAFG00000001261	SMG6	100	92.600	ENSCCAG00000035801	SMG6	100	92.600	Cebus_capucinus
ENSLAFG00000001261	SMG6	100	92.389	ENSCATG00000031956	SMG6	100	92.389	Cercocebus_atys
ENSLAFG00000001261	SMG6	100	92.107	ENSCLAG00000006748	SMG6	100	92.107	Chinchilla_lanigera
ENSLAFG00000001261	SMG6	100	93.023	ENSCSAG00000013800	SMG6	100	93.023	Chlorocebus_sabaeus
ENSLAFG00000001261	SMG6	57	100.000	ENSCHOG00000005024	-	73	100.000	Choloepus_hoffmanni
ENSLAFG00000001261	SMG6	100	72.153	ENSCPBG00000020369	SMG6	100	72.708	Chrysemys_picta_bellii
ENSLAFG00000001261	SMG6	98	92.585	ENSCANG00000031764	SMG6	100	96.869	Colobus_angolensis_palliatus
ENSLAFG00000001261	SMG6	55	86.829	ENSCGRG00001019595	Smg6	98	86.829	Cricetulus_griseus_chok1gshd
ENSLAFG00000001261	SMG6	98	84.006	ENSCGRG00000007782	Smg6	100	84.150	Cricetulus_griseus_crigri
ENSLAFG00000001261	SMG6	86	53.190	ENSCSEG00000012757	smg6	81	53.113	Cynoglossus_semilaevis
ENSLAFG00000001261	SMG6	72	56.948	ENSCVAG00000012789	smg6	74	53.636	Cyprinodon_variegatus
ENSLAFG00000001261	SMG6	96	54.702	ENSDARG00000100481	smg6	100	48.247	Danio_rerio
ENSLAFG00000001261	SMG6	100	92.812	ENSDNOG00000048283	SMG6	100	92.812	Dasypus_novemcinctus
ENSLAFG00000001261	SMG6	100	88.140	ENSDORG00000016614	Smg6	94	97.748	Dipodomys_ordii
ENSLAFG00000001261	SMG6	93	100.000	ENSETEG00000016790	SMG6	93	100.000	Echinops_telfairi
ENSLAFG00000001261	SMG6	73	50.243	ENSEBUG00000005059	smg6	74	48.179	Eptatretus_burgeri
ENSLAFG00000001261	SMG6	99	93.578	ENSEASG00005009318	SMG6	99	93.578	Equus_asinus_asinus
ENSLAFG00000001261	SMG6	99	93.296	ENSECAG00000006519	SMG6	99	93.296	Equus_caballus
ENSLAFG00000001261	SMG6	100	81.677	ENSEEUG00000003493	SMG6	100	81.677	Erinaceus_europaeus
ENSLAFG00000001261	SMG6	71	60.000	ENSELUG00000005934	smg6	71	54.322	Esox_lucius
ENSLAFG00000001261	SMG6	100	93.939	ENSFCAG00000028817	SMG6	100	93.939	Felis_catus
ENSLAFG00000001261	SMG6	98	70.901	ENSFALG00000006538	SMG6	100	70.972	Ficedula_albicollis
ENSLAFG00000001261	SMG6	100	92.037	ENSFDAG00000015106	SMG6	100	92.037	Fukomys_damarensis
ENSLAFG00000001261	SMG6	83	52.648	ENSFHEG00000013282	smg6	75	52.927	Fundulus_heteroclitus
ENSLAFG00000001261	SMG6	53	67.757	ENSGMOG00000019077	smg6	58	67.757	Gadus_morhua
ENSLAFG00000001261	SMG6	100	71.111	ENSGALG00000003108	SMG6	98	71.181	Gallus_gallus
ENSLAFG00000001261	SMG6	83	53.171	ENSGAFG00000000379	smg6	74	53.412	Gambusia_affinis
ENSLAFG00000001261	SMG6	90	53.476	ENSGACG00000020521	smg6	99	53.323	Gasterosteus_aculeatus
ENSLAFG00000001261	SMG6	98	71.429	ENSGAGG00000025617	SMG6	100	71.997	Gopherus_agassizii
ENSLAFG00000001261	SMG6	100	92.953	ENSGGOG00000017156	SMG6	100	92.953	Gorilla_gorilla
ENSLAFG00000001261	SMG6	86	52.955	ENSHBUG00000021311	smg6	74	55.164	Haplochromis_burtoni
ENSLAFG00000001261	SMG6	100	91.696	ENSHGLG00000012882	SMG6	100	91.696	Heterocephalus_glaber_female
ENSLAFG00000001261	SMG6	100	91.766	ENSHGLG00100017815	SMG6	100	91.766	Heterocephalus_glaber_male
ENSLAFG00000001261	SMG6	71	59.009	ENSHCOG00000008761	smg6	96	53.557	Hippocampus_comes
ENSLAFG00000001261	SMG6	87	53.497	ENSIPUG00000012493	smg6	78	52.986	Ictalurus_punctatus
ENSLAFG00000001261	SMG6	100	92.882	ENSSTOG00000028127	SMG6	100	92.882	Ictidomys_tridecemlineatus
ENSLAFG00000001261	SMG6	79	88.225	ENSJJAG00000015367	Smg6	95	86.308	Jaculus_jaculus
ENSLAFG00000001261	SMG6	88	52.030	ENSKMAG00000000279	smg6	79	52.448	Kryptolebias_marmoratus
ENSLAFG00000001261	SMG6	85	53.298	ENSLBEG00000002184	smg6	75	53.623	Labrus_bergylta
ENSLAFG00000001261	SMG6	55	57.177	ENSLACG00000000806	-	98	58.974	Latimeria_chalumnae
ENSLAFG00000001261	SMG6	74	64.591	ENSLOCG00000006448	smg6	99	54.244	Lepisosteus_oculatus
ENSLAFG00000001261	SMG6	100	92.741	ENSMFAG00000003394	SMG6	100	92.741	Macaca_fascicularis
ENSLAFG00000001261	SMG6	100	92.812	ENSMMUG00000023161	SMG6	100	92.812	Macaca_mulatta
ENSLAFG00000001261	SMG6	100	88.124	ENSMNEG00000044592	SMG6	100	88.124	Macaca_nemestrina
ENSLAFG00000001261	SMG6	98	90.195	ENSMLEG00000029353	SMG6	99	90.195	Mandrillus_leucophaeus
ENSLAFG00000001261	SMG6	85	54.755	ENSMAMG00000020119	smg6	80	54.817	Mastacembelus_armatus
ENSLAFG00000001261	SMG6	71	59.099	ENSMZEG00005024736	smg6	77	53.483	Maylandia_zebra
ENSLAFG00000001261	SMG6	74	65.156	ENSMGAG00000005401	-	99	65.250	Meleagris_gallopavo
ENSLAFG00000001261	SMG6	100	94.010	ENSMICG00000012913	SMG6	100	94.010	Microcebus_murinus
ENSLAFG00000001261	SMG6	100	47.085	ENSMMOG00000010883	smg6	100	47.995	Mola_mola
ENSLAFG00000001261	SMG6	100	85.584	ENSMODG00000010622	SMG6	100	85.584	Monodelphis_domestica
ENSLAFG00000001261	SMG6	83	54.310	ENSMALG00000001106	smg6	82	51.475	Monopterus_albus
ENSLAFG00000001261	SMG6	100	90.063	MGP_CAROLIEiJ_G0016729	Smg6	100	90.063	Mus_caroli
ENSLAFG00000001261	SMG6	100	89.922	ENSMUSG00000038290	Smg6	95	95.133	Mus_musculus
ENSLAFG00000001261	SMG6	100	89.711	MGP_PahariEiJ_G0017866	Smg6	95	95.133	Mus_pahari
ENSLAFG00000001261	SMG6	100	89.922	MGP_SPRETEiJ_G0017572	Smg6	96	94.298	Mus_spretus
ENSLAFG00000001261	SMG6	100	93.235	ENSMPUG00000013046	SMG6	100	93.235	Mustela_putorius_furo
ENSLAFG00000001261	SMG6	100	92.459	ENSMLUG00000005739	SMG6	100	92.459	Myotis_lucifugus
ENSLAFG00000001261	SMG6	98	90.209	ENSNGAG00000007287	Smg6	100	91.561	Nannospalax_galili
ENSLAFG00000001261	SMG6	87	51.680	ENSNBRG00000009511	smg6	100	47.909	Neolamprologus_brichardi
ENSLAFG00000001261	SMG6	98	92.181	ENSNLEG00000017171	SMG6	100	97.065	Nomascus_leucogenys
ENSLAFG00000001261	SMG6	98	81.466	ENSMEUG00000015804	SMG6	100	81.466	Notamacropus_eugenii
ENSLAFG00000001261	SMG6	62	91.855	ENSOPRG00000000579	SMG6	85	97.368	Ochotona_princeps
ENSLAFG00000001261	SMG6	100	85.081	ENSODEG00000008038	SMG6	100	85.081	Octodon_degus
ENSLAFG00000001261	SMG6	100	50.737	ENSONIG00000005594	smg6	100	51.469	Oreochromis_niloticus
ENSLAFG00000001261	SMG6	100	92.329	ENSOCUG00000013018	SMG6	100	92.470	Oryctolagus_cuniculus
ENSLAFG00000001261	SMG6	83	53.737	ENSORLG00000003317	smg6	74	54.232	Oryzias_latipes
ENSLAFG00000001261	SMG6	83	53.864	ENSORLG00020015343	smg6	74	53.967	Oryzias_latipes_hni
ENSLAFG00000001261	SMG6	83	53.737	ENSORLG00015020454	smg6	74	54.232	Oryzias_latipes_hsok
ENSLAFG00000001261	SMG6	83	53.365	ENSOMEG00000010838	smg6	75	53.543	Oryzias_melastigma
ENSLAFG00000001261	SMG6	100	93.169	ENSOGAG00000004483	SMG6	100	93.169	Otolemur_garnettii
ENSLAFG00000001261	SMG6	100	90.211	ENSOARG00000015076	SMG6	100	91.769	Ovis_aries
ENSLAFG00000001261	SMG6	100	93.094	ENSPPAG00000043296	SMG6	100	93.094	Pan_paniscus
ENSLAFG00000001261	SMG6	100	94.080	ENSPPRG00000014581	SMG6	100	94.080	Panthera_pardus
ENSLAFG00000001261	SMG6	98	94.079	ENSPTIG00000008925	SMG6	100	97.847	Panthera_tigris_altaica
ENSLAFG00000001261	SMG6	100	93.023	ENSPTRG00000008544	SMG6	100	97.260	Pan_troglodytes
ENSLAFG00000001261	SMG6	100	92.741	ENSPANG00000024588	SMG6	100	92.741	Papio_anubis
ENSLAFG00000001261	SMG6	89	70.478	ENSPSIG00000006660	SMG6	96	70.556	Pelodiscus_sinensis
ENSLAFG00000001261	SMG6	100	48.748	ENSPMGG00000000844	smg6	100	60.462	Periophthalmus_magnuspinnatus
ENSLAFG00000001261	SMG6	100	91.402	ENSPEMG00000020707	Smg6	97	95.133	Peromyscus_maniculatus_bairdii
ENSLAFG00000001261	SMG6	100	51.313	ENSPFOG00000012035	smg6	100	50.600	Poecilia_formosa
ENSLAFG00000001261	SMG6	77	56.014	ENSPLAG00000017660	smg6	74	52.969	Poecilia_latipinna
ENSLAFG00000001261	SMG6	77	55.812	ENSPMEG00000000258	smg6	74	53.281	Poecilia_mexicana
ENSLAFG00000001261	SMG6	83	53.647	ENSPREG00000010066	smg6	74	53.260	Poecilia_reticulata
ENSLAFG00000001261	SMG6	100	87.693	ENSPPYG00000007790	SMG6	100	87.693	Pongo_abelii
ENSLAFG00000001261	SMG6	100	90.486	ENSPCAG00000000552	SMG6	100	90.486	Procavia_capensis
ENSLAFG00000001261	SMG6	100	93.587	ENSPCOG00000020925	SMG6	100	93.587	Propithecus_coquereli
ENSLAFG00000001261	SMG6	86	96.552	ENSPVAG00000002159	SMG6	86	96.552	Pteropus_vampyrus
ENSLAFG00000001261	SMG6	88	53.439	ENSPNYG00000024151	smg6	83	55.290	Pundamilia_nyererei
ENSLAFG00000001261	SMG6	84	52.518	ENSPNAG00000015480	smg6	90	47.942	Pygocentrus_nattereri
ENSLAFG00000001261	SMG6	100	90.557	ENSRNOG00000003041	Smg6	100	90.557	Rattus_norvegicus
ENSLAFG00000001261	SMG6	100	92.953	ENSRBIG00000024746	SMG6	100	92.953	Rhinopithecus_bieti
ENSLAFG00000001261	SMG6	100	93.023	ENSRROG00000030423	SMG6	100	96.477	Rhinopithecus_roxellana
ENSLAFG00000001261	SMG6	100	92.671	ENSSBOG00000022518	SMG6	100	90.980	Saimiri_boliviensis_boliviensis
ENSLAFG00000001261	SMG6	98	85.284	ENSSHAG00000010045	SMG6	98	85.284	Sarcophilus_harrisii
ENSLAFG00000001261	SMG6	72	62.245	ENSSFOG00015005436	smg6	70	56.727	Scleropages_formosus
ENSLAFG00000001261	SMG6	83	54.814	ENSSMAG00000019777	smg6	73	54.264	Scophthalmus_maximus
ENSLAFG00000001261	SMG6	83	54.538	ENSSDUG00000016412	smg6	74	54.503	Seriola_dumerili
ENSLAFG00000001261	SMG6	80	53.647	ENSSLDG00000020747	smg6	77	53.543	Seriola_lalandi_dorsalis
ENSLAFG00000001261	SMG6	99	69.735	ENSSPUG00000007152	SMG6	99	69.735	Sphenodon_punctatus
ENSLAFG00000001261	SMG6	71	58.188	ENSSPAG00000015633	smg6	74	54.254	Stegastes_partitus
ENSLAFG00000001261	SMG6	100	92.183	ENSSSCG00000017826	SMG6	100	92.183	Sus_scrofa
ENSLAFG00000001261	SMG6	100	71.669	ENSTGUG00000005836	SMG6	100	71.809	Taeniopygia_guttata
ENSLAFG00000001261	SMG6	83	54.495	ENSTRUG00000000358	smg6	81	54.691	Takifugu_rubripes
ENSLAFG00000001261	SMG6	100	49.175	ENSTNIG00000016164	smg6	100	49.570	Tetraodon_nigroviridis
ENSLAFG00000001261	SMG6	100	88.654	ENSTBEG00000011424	SMG6	100	88.654	Tupaia_belangeri
ENSLAFG00000001261	SMG6	91	91.061	ENSTTRG00000001175	SMG6	91	91.061	Tursiops_truncatus
ENSLAFG00000001261	SMG6	100	93.108	ENSUAMG00000025152	SMG6	100	93.038	Ursus_americanus
ENSLAFG00000001261	SMG6	98	93.357	ENSUMAG00000009306	SMG6	100	93.357	Ursus_maritimus
ENSLAFG00000001261	SMG6	85	100.000	ENSVPAG00000000225	SMG6	88	100.000	Vicugna_pacos
ENSLAFG00000001261	SMG6	100	93.094	ENSVVUG00000021727	SMG6	100	93.094	Vulpes_vulpes
ENSLAFG00000001261	SMG6	98	58.873	ENSXETG00000023799	SMG6	100	58.655	Xenopus_tropicalis
ENSLAFG00000001261	SMG6	83	55.048	ENSXCOG00000009867	smg6	74	54.821	Xiphophorus_couchianus
ENSLAFG00000001261	SMG6	87	52.897	ENSXMAG00000010321	smg6	74	53.390	Xiphophorus_maculatus