EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLAFG00000001483 (Gene tree)
Gene ID: -
Gene Symbol: PRDM4
Alias: PFM1
Full Name: PR/SET domain 4
Gene Type: protein_coding
Species: Loxodonta_africana
Status: putative
Strand: Minus strand
Length: 30664 bases
Position: chrscaffold_2:104144305-104174968
Accession: 9348
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLAFP00000001236	zf-C2H2	PF00096.26	1.5e-19	1	2
ENSLAFP00000001236	zf-C2H2	PF00096.26	1.5e-19	2	2
ENSLAFP00000001236	zf-met	PF12874.7	0.00019	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLAFT00000001483	PRDM4-201	2364	-	ENSLAFP00000001236	788 (aa)	-	G3SNM6

Gene Model

Click here to download ENSLAFG00000001483's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLAFG00000001483's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLAFG00000001483	PRDM4	53	32.129	ENSLAFG00000008866	PRDM15	62	32.530

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLAFG00000001483	PRDM4	100	96.701	ENSG00000110851	PRDM4	100	97.133	Homo_sapiens
ENSLAFG00000001483	PRDM4	100	97.212	ENSAMEG00000016174	PRDM4	98	97.212	Ailuropoda_melanoleuca
ENSLAFG00000001483	PRDM4	100	87.437	ENSAPLG00000009846	PRDM4	97	86.929	Anas_platyrhynchos
ENSLAFG00000001483	PRDM4	100	96.827	ENSANAG00000024800	PRDM4	98	96.827	Aotus_nancymaae
ENSLAFG00000001483	PRDM4	100	97.208	ENSBTAG00000012999	PRDM4	98	97.208	Bos_taurus
ENSLAFG00000001483	PRDM4	100	96.320	ENSCJAG00000015261	PRDM4	98	96.320	Callithrix_jacchus
ENSLAFG00000001483	PRDM4	100	97.208	ENSCAFG00000001788	PRDM4	98	97.208	Canis_familiaris
ENSLAFG00000001483	PRDM4	100	97.208	ENSCAFG00020004916	PRDM4	98	97.208	Canis_lupus_dingo
ENSLAFG00000001483	PRDM4	100	96.954	ENSCHIG00000019409	PRDM4	98	96.954	Capra_hircus
ENSLAFG00000001483	PRDM4	100	96.827	ENSTSYG00000009248	PRDM4	98	96.827	Carlito_syrichta
ENSLAFG00000001483	PRDM4	100	90.380	ENSCAPG00000013937	PRDM4	94	92.084	Cavia_aperea
ENSLAFG00000001483	PRDM4	100	89.824	ENSCPOG00000022385	PRDM4	94	91.373	Cavia_porcellus
ENSLAFG00000001483	PRDM4	100	96.827	ENSCCAG00000036033	PRDM4	98	96.827	Cebus_capucinus
ENSLAFG00000001483	PRDM4	100	96.447	ENSCATG00000044797	PRDM4	98	96.447	Cercocebus_atys
ENSLAFG00000001483	PRDM4	100	92.893	ENSCLAG00000007545	PRDM4	98	93.147	Chinchilla_lanigera
ENSLAFG00000001483	PRDM4	100	96.574	ENSCSAG00000002896	PRDM4	98	96.574	Chlorocebus_sabaeus
ENSLAFG00000001483	PRDM4	64	96.379	ENSCHOG00000001744	PRDM4	76	96.379	Choloepus_hoffmanni
ENSLAFG00000001483	PRDM4	100	87.944	ENSCPBG00000023187	PRDM4	98	87.944	Chrysemys_picta_bellii
ENSLAFG00000001483	PRDM4	100	96.447	ENSCANG00000021804	PRDM4	98	96.447	Colobus_angolensis_palliatus
ENSLAFG00000001483	PRDM4	100	93.782	ENSCGRG00001015102	-	98	93.528	Cricetulus_griseus_chok1gshd
ENSLAFG00000001483	PRDM4	96	93.808	ENSCGRG00000004044	-	98	93.544	Cricetulus_griseus_crigri
ENSLAFG00000001483	PRDM4	100	96.193	ENSDNOG00000032478	PRDM4	99	96.291	Dasypus_novemcinctus
ENSLAFG00000001483	PRDM4	91	92.150	ENSDORG00000015081	-	98	92.491	Dipodomys_ordii
ENSLAFG00000001483	PRDM4	96	45.467	ENSEBUG00000003775	prdm4	99	45.504	Eptatretus_burgeri
ENSLAFG00000001483	PRDM4	100	97.716	ENSECAG00000015423	PRDM4	98	97.716	Equus_caballus
ENSLAFG00000001483	PRDM4	94	93.001	ENSEEUG00000006569	PRDM4	98	92.732	Erinaceus_europaeus
ENSLAFG00000001483	PRDM4	97	61.146	ENSELUG00000015265	prdm4	93	61.390	Esox_lucius
ENSLAFG00000001483	PRDM4	100	97.589	ENSFCAG00000022478	PRDM4	98	97.589	Felis_catus
ENSLAFG00000001483	PRDM4	100	87.817	ENSFALG00000013342	PRDM4	98	87.437	Ficedula_albicollis
ENSLAFG00000001483	PRDM4	100	87.468	ENSGALG00000012619	PRDM4	98	86.962	Gallus_gallus
ENSLAFG00000001483	PRDM4	100	87.563	ENSGAGG00000002763	PRDM4	93	87.563	Gopherus_agassizii
ENSLAFG00000001483	PRDM4	100	96.574	ENSGGOG00000001244	PRDM4	98	96.574	Gorilla_gorilla
ENSLAFG00000001483	PRDM4	100	93.909	ENSHGLG00000004590	PRDM4	96	93.528	Heterocephalus_glaber_female
ENSLAFG00000001483	PRDM4	100	93.916	ENSHGLG00100007464	PRDM4	98	93.536	Heterocephalus_glaber_male
ENSLAFG00000001483	PRDM4	97	60.591	ENSIPUG00000024162	prdm4	93	60.673	Ictalurus_punctatus
ENSLAFG00000001483	PRDM4	100	96.701	ENSSTOG00000016168	PRDM4	98	96.701	Ictidomys_tridecemlineatus
ENSLAFG00000001483	PRDM4	78	96.386	ENSJJAG00000022448	-	93	93.496	Jaculus_jaculus
ENSLAFG00000001483	PRDM4	97	73.992	ENSLACG00000007452	PRDM4	94	74.476	Latimeria_chalumnae
ENSLAFG00000001483	PRDM4	76	41.067	ENSLOCG00000017092	prdm4	93	52.814	Lepisosteus_oculatus
ENSLAFG00000001483	PRDM4	100	96.701	ENSMFAG00000041862	PRDM4	98	96.701	Macaca_fascicularis
ENSLAFG00000001483	PRDM4	100	96.701	ENSMMUG00000015550	PRDM4	98	96.701	Macaca_mulatta
ENSLAFG00000001483	PRDM4	100	96.447	ENSMNEG00000032319	PRDM4	98	96.447	Macaca_nemestrina
ENSLAFG00000001483	PRDM4	100	96.574	ENSMLEG00000039607	PRDM4	98	96.574	Mandrillus_leucophaeus
ENSLAFG00000001483	PRDM4	100	80.025	ENSMGAG00000012815	PRDM4	98	79.520	Meleagris_gallopavo
ENSLAFG00000001483	PRDM4	100	95.685	ENSMICG00000007807	PRDM4	98	95.685	Microcebus_murinus
ENSLAFG00000001483	PRDM4	100	93.655	ENSMOCG00000000753	Prdm4	97	93.401	Microtus_ochrogaster
ENSLAFG00000001483	PRDM4	100	94.289	ENSMUSG00000035529	Prdm4	98	94.036	Mus_musculus
ENSLAFG00000001483	PRDM4	100	93.909	MGP_PahariEiJ_G0031398	Prdm4	98	93.909	Mus_pahari
ENSLAFG00000001483	PRDM4	100	94.924	MGP_SPRETEiJ_G0016505	Prdm4	98	94.924	Mus_spretus
ENSLAFG00000001483	PRDM4	100	91.793	ENSMPUG00000012238	PRDM4	98	91.793	Mustela_putorius_furo
ENSLAFG00000001483	PRDM4	100	96.954	ENSMLUG00000000767	PRDM4	98	96.954	Myotis_lucifugus
ENSLAFG00000001483	PRDM4	100	95.431	ENSNGAG00000018627	Prdm4	98	95.431	Nannospalax_galili
ENSLAFG00000001483	PRDM4	100	96.574	ENSNLEG00000006748	PRDM4	98	96.574	Nomascus_leucogenys
ENSLAFG00000001483	PRDM4	89	90.865	ENSMEUG00000004495	PRDM4	87	90.865	Notamacropus_eugenii
ENSLAFG00000001483	PRDM4	88	96.875	ENSOPRG00000010192	PRDM4	87	96.875	Ochotona_princeps
ENSLAFG00000001483	PRDM4	100	90.609	ENSODEG00000014750	PRDM4	97	90.482	Octodon_degus
ENSLAFG00000001483	PRDM4	100	91.497	ENSOANG00000005526	PRDM4	98	91.497	Ornithorhynchus_anatinus
ENSLAFG00000001483	PRDM4	96	96.317	ENSOCUG00000012859	PRDM4	96	96.317	Oryctolagus_cuniculus
ENSLAFG00000001483	PRDM4	100	97.208	ENSOGAG00000011945	PRDM4	98	97.208	Otolemur_garnettii
ENSLAFG00000001483	PRDM4	100	96.574	ENSOARG00000017955	PRDM4	98	96.574	Ovis_aries
ENSLAFG00000001483	PRDM4	100	96.701	ENSPPAG00000038438	PRDM4	98	96.701	Pan_paniscus
ENSLAFG00000001483	PRDM4	100	97.589	ENSPPRG00000004144	PRDM4	98	97.589	Panthera_pardus
ENSLAFG00000001483	PRDM4	100	97.589	ENSPTIG00000005847	PRDM4	98	97.589	Panthera_tigris_altaica
ENSLAFG00000001483	PRDM4	100	96.827	ENSPTRG00000005400	PRDM4	98	96.827	Pan_troglodytes
ENSLAFG00000001483	PRDM4	100	96.701	ENSPANG00000022084	PRDM4	98	96.701	Papio_anubis
ENSLAFG00000001483	PRDM4	96	61.587	ENSPKIG00000000875	prdm4	93	61.869	Paramormyrops_kingsleyae
ENSLAFG00000001483	PRDM4	91	81.818	ENSPSIG00000012066	PRDM4	98	81.818	Pelodiscus_sinensis
ENSLAFG00000001483	PRDM4	100	94.670	ENSPEMG00000014598	Prdm4	98	94.670	Peromyscus_maniculatus_bairdii
ENSLAFG00000001483	PRDM4	99	89.721	ENSPCIG00000009471	PRDM4	97	89.721	Phascolarctos_cinereus
ENSLAFG00000001483	PRDM4	100	96.574	ENSPPYG00000004913	PRDM4	98	96.574	Pongo_abelii
ENSLAFG00000001483	PRDM4	83	97.727	ENSPCAG00000009987	PRDM4	81	97.727	Procavia_capensis
ENSLAFG00000001483	PRDM4	100	95.558	ENSPCOG00000021060	PRDM4	98	95.558	Propithecus_coquereli
ENSLAFG00000001483	PRDM4	100	96.451	ENSPVAG00000001596	PRDM4	97	96.451	Pteropus_vampyrus
ENSLAFG00000001483	PRDM4	97	95.033	ENSRNOG00000004962	Prdm4	94	95.119	Rattus_norvegicus
ENSLAFG00000001483	PRDM4	100	96.447	ENSRBIG00000035488	PRDM4	98	96.447	Rhinopithecus_bieti
ENSLAFG00000001483	PRDM4	100	96.574	ENSRROG00000012779	PRDM4	98	96.574	Rhinopithecus_roxellana
ENSLAFG00000001483	PRDM4	100	96.574	ENSSBOG00000000403	PRDM4	98	96.574	Saimiri_boliviensis_boliviensis
ENSLAFG00000001483	PRDM4	99	63.806	ENSSFOG00015023358	prdm4	97	63.806	Scleropages_formosus
ENSLAFG00000001483	PRDM4	100	97.081	ENSSSCG00000000160	PRDM4	98	97.081	Sus_scrofa
ENSLAFG00000001483	PRDM4	100	87.944	ENSTGUG00000010962	-	98	87.563	Taeniopygia_guttata
ENSLAFG00000001483	PRDM4	75	89.545	ENSTBEG00000001732	PRDM4	84	89.545	Tupaia_belangeri
ENSLAFG00000001483	PRDM4	100	97.081	ENSTTRG00000011056	PRDM4	98	97.081	Tursiops_truncatus
ENSLAFG00000001483	PRDM4	100	97.462	ENSUAMG00000022796	PRDM4	98	97.462	Ursus_americanus
ENSLAFG00000001483	PRDM4	100	97.462	ENSUMAG00000017231	PRDM4	98	97.462	Ursus_maritimus
ENSLAFG00000001483	PRDM4	100	97.462	ENSVPAG00000002215	PRDM4	98	97.462	Vicugna_pacos
ENSLAFG00000001483	PRDM4	100	97.208	ENSVVUG00000023397	PRDM4	98	97.208	Vulpes_vulpes