EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLAFG00000002267 (Gene tree)
Gene ID: -
Gene Symbol: USB1
Alias: C16orf57|FLJ13154|HVSL1|Mpn1
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Loxodonta_africana
Status: putative
Strand: Minus strand
Length: 12647 bases
Position: chrscaffold_43:68826-81472
Accession: 25792
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLAFP00000001894	HVSL	PF09749.9	1.5e-49	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLAFT00000002267	USB1-201	810	-	ENSLAFP00000001894	269 (aa)	-	G3SQ47

Gene Model

Click here to download ENSLAFG00000002267's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLAFG00000002267's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLAFG00000002267	USB1	100	65.556	ENSG00000103005	USB1	100	66.822	Homo_sapiens
ENSLAFG00000002267	USB1	98	38.710	ENSAPOG00000011942	usb1	99	38.710	Acanthochromis_polyacanthus
ENSLAFG00000002267	USB1	100	64.815	ENSAMEG00000017205	USB1	100	64.444	Ailuropoda_melanoleuca
ENSLAFG00000002267	USB1	84	44.017	ENSACIG00000012234	usb1	99	42.806	Amphilophus_citrinellus
ENSLAFG00000002267	USB1	98	37.801	ENSAOCG00000014831	usb1	99	38.889	Amphiprion_ocellaris
ENSLAFG00000002267	USB1	98	38.144	ENSAPEG00000000296	usb1	99	38.966	Amphiprion_percula
ENSLAFG00000002267	USB1	86	43.777	ENSATEG00000009348	usb1	99	40.070	Anabas_testudineus
ENSLAFG00000002267	USB1	83	57.709	ENSAPLG00000002756	USB1	100	58.150	Anas_platyrhynchos
ENSLAFG00000002267	USB1	83	52.814	ENSACAG00000015481	USB1	99	52.814	Anolis_carolinensis
ENSLAFG00000002267	USB1	100	64.815	ENSANAG00000035640	USB1	100	64.444	Aotus_nancymaae
ENSLAFG00000002267	USB1	83	43.290	ENSACLG00000020586	usb1	99	39.721	Astatotilapia_calliptera
ENSLAFG00000002267	USB1	93	42.688	ENSAMXG00000040146	usb1	83	42.292	Astyanax_mexicanus
ENSLAFG00000002267	USB1	100	66.052	ENSBTAG00000015758	USB1	100	65.683	Bos_taurus
ENSLAFG00000002267	USB1	100	65.556	ENSCJAG00000011733	USB1	100	65.185	Callithrix_jacchus
ENSLAFG00000002267	USB1	99	62.868	ENSCAFG00000008556	USB1	73	63.139	Canis_familiaris
ENSLAFG00000002267	USB1	99	62.825	ENSCAFG00020009263	USB1	99	62.454	Canis_lupus_dingo
ENSLAFG00000002267	USB1	100	63.333	ENSCHIG00000024290	USB1	100	62.963	Capra_hircus
ENSLAFG00000002267	USB1	100	64.074	ENSTSYG00000006997	USB1	100	64.815	Carlito_syrichta
ENSLAFG00000002267	USB1	86	51.709	ENSCAPG00000009057	USB1	100	51.282	Cavia_aperea
ENSLAFG00000002267	USB1	100	64.234	ENSCPOG00000014325	USB1	100	63.869	Cavia_porcellus
ENSLAFG00000002267	USB1	100	65.926	ENSCCAG00000022132	USB1	100	65.556	Cebus_capucinus
ENSLAFG00000002267	USB1	100	65.185	ENSCATG00000032174	USB1	100	65.314	Cercocebus_atys
ENSLAFG00000002267	USB1	53	74.825	ENSCLAG00000007363	USB1	81	74.126	Chinchilla_lanigera
ENSLAFG00000002267	USB1	100	65.185	ENSCSAG00000004783	USB1	100	65.314	Chlorocebus_sabaeus
ENSLAFG00000002267	USB1	86	57.759	ENSCPBG00000026943	USB1	100	54.480	Chrysemys_picta_bellii
ENSLAFG00000002267	USB1	87	68.085	ENSCANG00000037135	USB1	100	64.945	Colobus_angolensis_palliatus
ENSLAFG00000002267	USB1	100	66.912	ENSCGRG00001011243	USB1	100	66.544	Cricetulus_griseus_chok1gshd
ENSLAFG00000002267	USB1	100	66.912	ENSCGRG00000013252	USB1	100	66.544	Cricetulus_griseus_crigri
ENSLAFG00000002267	USB1	98	43.060	ENSCSEG00000013881	usb1	99	43.060	Cynoglossus_semilaevis
ENSLAFG00000002267	USB1	83	38.912	ENSCVAG00000009252	usb1	97	42.128	Cyprinodon_variegatus
ENSLAFG00000002267	USB1	83	41.071	ENSDARG00000003841	usb1	99	38.182	Danio_rerio
ENSLAFG00000002267	USB1	100	64.444	ENSDORG00000001888	Usb1	100	64.074	Dipodomys_ordii
ENSLAFG00000002267	USB1	75	36.232	FBgn0037713	CG16790	97	33.582	Drosophila_melanogaster
ENSLAFG00000002267	USB1	100	56.475	ENSETEG00000019682	USB1	100	57.934	Echinops_telfairi
ENSLAFG00000002267	USB1	82	44.643	ENSEBUG00000005889	usb1	78	43.750	Eptatretus_burgeri
ENSLAFG00000002267	USB1	100	67.407	ENSEASG00005005484	USB1	100	67.037	Equus_asinus_asinus
ENSLAFG00000002267	USB1	100	66.667	ENSECAG00000019493	USB1	91	66.296	Equus_caballus
ENSLAFG00000002267	USB1	83	42.672	ENSELUG00000010974	usb1	82	42.672	Esox_lucius
ENSLAFG00000002267	USB1	100	65.556	ENSFCAG00000002693	USB1	100	65.185	Felis_catus
ENSLAFG00000002267	USB1	83	55.310	ENSFALG00000006876	USB1	98	50.735	Ficedula_albicollis
ENSLAFG00000002267	USB1	100	65.809	ENSFDAG00000010052	USB1	100	65.441	Fukomys_damarensis
ENSLAFG00000002267	USB1	80	39.474	ENSFHEG00000012334	usb1	91	39.912	Fundulus_heteroclitus
ENSLAFG00000002267	USB1	83	42.174	ENSGMOG00000004228	usb1	99	42.174	Gadus_morhua
ENSLAFG00000002267	USB1	83	55.357	ENSGALG00000035604	USB1	99	51.673	Gallus_gallus
ENSLAFG00000002267	USB1	98	39.161	ENSGAFG00000021890	usb1	99	39.161	Gambusia_affinis
ENSLAFG00000002267	USB1	84	43.478	ENSGACG00000003257	usb1	99	42.049	Gasterosteus_aculeatus
ENSLAFG00000002267	USB1	100	55.957	ENSGAGG00000022572	USB1	100	55.678	Gopherus_agassizii
ENSLAFG00000002267	USB1	100	65.185	ENSGGOG00000017147	USB1	100	64.815	Gorilla_gorilla
ENSLAFG00000002267	USB1	83	43.723	ENSHBUG00000009823	usb1	99	40.210	Haplochromis_burtoni
ENSLAFG00000002267	USB1	100	66.176	ENSHGLG00000016078	USB1	98	65.809	Heterocephalus_glaber_female
ENSLAFG00000002267	USB1	100	66.176	ENSHGLG00100005562	USB1	98	65.809	Heterocephalus_glaber_male
ENSLAFG00000002267	USB1	80	45.740	ENSHCOG00000015633	usb1	99	42.804	Hippocampus_comes
ENSLAFG00000002267	USB1	98	41.176	ENSIPUG00000008601	usb1	99	40.830	Ictalurus_punctatus
ENSLAFG00000002267	USB1	100	66.182	ENSSTOG00000007548	USB1	100	65.818	Ictidomys_tridecemlineatus
ENSLAFG00000002267	USB1	100	66.667	ENSJJAG00000021859	Usb1	100	66.296	Jaculus_jaculus
ENSLAFG00000002267	USB1	83	39.574	ENSKMAG00000007200	usb1	99	37.979	Kryptolebias_marmoratus
ENSLAFG00000002267	USB1	73	43.902	ENSLBEG00000008452	usb1	80	39.506	Labrus_bergylta
ENSLAFG00000002267	USB1	77	50.943	ENSLACG00000000105	USB1	93	46.097	Latimeria_chalumnae
ENSLAFG00000002267	USB1	92	44.922	ENSLOCG00000000465	usb1	99	42.123	Lepisosteus_oculatus
ENSLAFG00000002267	USB1	100	65.556	ENSMFAG00000003926	USB1	100	65.683	Macaca_fascicularis
ENSLAFG00000002267	USB1	100	65.556	ENSMMUG00000022669	USB1	100	65.683	Macaca_mulatta
ENSLAFG00000002267	USB1	100	65.185	ENSMNEG00000042487	USB1	100	65.314	Macaca_nemestrina
ENSLAFG00000002267	USB1	100	65.556	ENSMLEG00000028756	USB1	100	65.683	Mandrillus_leucophaeus
ENSLAFG00000002267	USB1	98	39.792	ENSMAMG00000015092	usb1	99	41.053	Mastacembelus_armatus
ENSLAFG00000002267	USB1	83	43.290	ENSMZEG00005010008	usb1	99	39.860	Maylandia_zebra
ENSLAFG00000002267	USB1	100	65.926	ENSMAUG00000007832	Usb1	100	65.556	Mesocricetus_auratus
ENSLAFG00000002267	USB1	100	63.704	ENSMICG00000004900	USB1	100	64.815	Microcebus_murinus
ENSLAFG00000002267	USB1	100	65.556	ENSMOCG00000022647	Usb1	100	64.815	Microtus_ochrogaster
ENSLAFG00000002267	USB1	84	43.830	ENSMMOG00000000490	usb1	99	41.912	Mola_mola
ENSLAFG00000002267	USB1	100	52.098	ENSMODG00000014067	USB1	100	54.577	Monodelphis_domestica
ENSLAFG00000002267	USB1	83	43.290	ENSMALG00000005930	usb1	99	38.621	Monopterus_albus
ENSLAFG00000002267	USB1	100	67.037	MGP_CAROLIEiJ_G0031421	Usb1	100	66.296	Mus_caroli
ENSLAFG00000002267	USB1	100	68.148	ENSMUSG00000031792	Usb1	100	67.407	Mus_musculus
ENSLAFG00000002267	USB1	100	67.037	MGP_PahariEiJ_G0023019	Usb1	100	66.667	Mus_pahari
ENSLAFG00000002267	USB1	100	67.407	MGP_SPRETEiJ_G0032540	Usb1	100	67.037	Mus_spretus
ENSLAFG00000002267	USB1	100	63.838	ENSMPUG00000004684	USB1	96	63.469	Mustela_putorius_furo
ENSLAFG00000002267	USB1	86	69.528	ENSMLUG00000007400	USB1	100	69.528	Myotis_lucifugus
ENSLAFG00000002267	USB1	100	68.519	ENSNGAG00000009703	Usb1	100	68.148	Nannospalax_galili
ENSLAFG00000002267	USB1	86	37.975	ENSNBRG00000008747	usb1	99	41.364	Neolamprologus_brichardi
ENSLAFG00000002267	USB1	94	63.922	ENSNLEG00000003340	USB1	100	63.529	Nomascus_leucogenys
ENSLAFG00000002267	USB1	53	40.268	ENSMEUG00000003328	-	92	42.105	Notamacropus_eugenii
ENSLAFG00000002267	USB1	62	85.294	ENSOPRG00000011803	USB1	72	85.294	Ochotona_princeps
ENSLAFG00000002267	USB1	100	63.971	ENSODEG00000016214	USB1	100	63.603	Octodon_degus
ENSLAFG00000002267	USB1	98	39.649	ENSONIG00000011063	usb1	99	39.649	Oreochromis_niloticus
ENSLAFG00000002267	USB1	83	59.483	ENSOANG00000012118	USB1	94	59.052	Ornithorhynchus_anatinus
ENSLAFG00000002267	USB1	84	41.702	ENSORLG00000012479	usb1	99	39.928	Oryzias_latipes
ENSLAFG00000002267	USB1	84	41.739	ENSORLG00020018671	usb1	99	39.711	Oryzias_latipes_hni
ENSLAFG00000002267	USB1	84	41.702	ENSORLG00015009679	usb1	99	39.855	Oryzias_latipes_hsok
ENSLAFG00000002267	USB1	84	41.277	ENSOMEG00000012930	usb1	99	38.652	Oryzias_melastigma
ENSLAFG00000002267	USB1	100	61.255	ENSOGAG00000003273	USB1	100	60.595	Otolemur_garnettii
ENSLAFG00000002267	USB1	93	63.889	ENSOARG00000001107	USB1	96	63.492	Ovis_aries
ENSLAFG00000002267	USB1	100	65.185	ENSPPAG00000042137	USB1	100	64.815	Pan_paniscus
ENSLAFG00000002267	USB1	100	65.556	ENSPPRG00000024797	USB1	100	65.185	Panthera_pardus
ENSLAFG00000002267	USB1	100	65.926	ENSPTIG00000007506	USB1	100	65.556	Panthera_tigris_altaica
ENSLAFG00000002267	USB1	100	58.736	ENSPTRG00000008172	USB1	100	66.822	Pan_troglodytes
ENSLAFG00000002267	USB1	100	65.556	ENSPANG00000025138	USB1	100	65.683	Papio_anubis
ENSLAFG00000002267	USB1	96	43.295	ENSPKIG00000015109	usb1	84	43.295	Paramormyrops_kingsleyae
ENSLAFG00000002267	USB1	83	42.373	ENSPSIG00000004305	USB1	100	42.373	Pelodiscus_sinensis
ENSLAFG00000002267	USB1	83	44.397	ENSPMGG00000017725	usb1	98	41.697	Periophthalmus_magnuspinnatus
ENSLAFG00000002267	USB1	100	65.693	ENSPEMG00000016183	Usb1	100	64.964	Peromyscus_maniculatus_bairdii
ENSLAFG00000002267	USB1	87	44.304	ENSPMAG00000000462	usb1	100	43.882	Petromyzon_marinus
ENSLAFG00000002267	USB1	98	39.024	ENSPFOG00000011130	usb1	99	40.283	Poecilia_formosa
ENSLAFG00000002267	USB1	98	39.373	ENSPLAG00000009820	usb1	99	40.217	Poecilia_latipinna
ENSLAFG00000002267	USB1	98	38.356	ENSPMEG00000006402	usb1	99	39.583	Poecilia_mexicana
ENSLAFG00000002267	USB1	86	37.209	ENSPREG00000001047	usb1	98	38.583	Poecilia_reticulata
ENSLAFG00000002267	USB1	95	61.923	ENSPPYG00000007401	USB1	100	61.538	Pongo_abelii
ENSLAFG00000002267	USB1	100	64.493	ENSPCOG00000022612	USB1	100	65.556	Propithecus_coquereli
ENSLAFG00000002267	USB1	100	62.222	ENSPVAG00000004613	USB1	100	62.222	Pteropus_vampyrus
ENSLAFG00000002267	USB1	83	43.723	ENSPNYG00000022262	usb1	99	40.559	Pundamilia_nyererei
ENSLAFG00000002267	USB1	84	45.175	ENSPNAG00000011736	usb1	99	40.136	Pygocentrus_nattereri
ENSLAFG00000002267	USB1	100	69.259	ENSRNOG00000013216	Usb1	100	68.519	Rattus_norvegicus
ENSLAFG00000002267	USB1	100	57.818	ENSRBIG00000044466	USB1	100	66.822	Rhinopithecus_bieti
ENSLAFG00000002267	USB1	100	65.185	ENSRROG00000029211	USB1	100	64.945	Rhinopithecus_roxellana
ENSLAFG00000002267	USB1	100	65.926	ENSSBOG00000029362	USB1	100	65.556	Saimiri_boliviensis_boliviensis
ENSLAFG00000002267	USB1	81	58.590	ENSSHAG00000006993	USB1	100	52.963	Sarcophilus_harrisii
ENSLAFG00000002267	USB1	97	42.349	ENSSFOG00015023663	usb1	91	42.373	Scleropages_formosus
ENSLAFG00000002267	USB1	84	42.149	ENSSMAG00000015834	usb1	99	39.867	Scophthalmus_maximus
ENSLAFG00000002267	USB1	84	44.978	ENSSDUG00000002949	usb1	99	42.545	Seriola_dumerili
ENSLAFG00000002267	USB1	83	45.133	ENSSLDG00000014174	usb1	99	41.259	Seriola_lalandi_dorsalis
ENSLAFG00000002267	USB1	79	52.294	ENSSPUG00000006741	USB1	100	52.336	Sphenodon_punctatus
ENSLAFG00000002267	USB1	83	42.857	ENSSPAG00000007484	usb1	99	39.310	Stegastes_partitus
ENSLAFG00000002267	USB1	100	67.407	ENSSSCG00000002807	USB1	100	67.037	Sus_scrofa
ENSLAFG00000002267	USB1	78	57.477	ENSTGUG00000004792	USB1	99	51.636	Taeniopygia_guttata
ENSLAFG00000002267	USB1	98	42.029	ENSTRUG00000021069	usb1	99	42.029	Takifugu_rubripes
ENSLAFG00000002267	USB1	98	41.791	ENSTNIG00000000626	usb1	98	41.791	Tetraodon_nigroviridis
ENSLAFG00000002267	USB1	86	52.586	ENSTBEG00000001507	USB1	100	52.586	Tupaia_belangeri
ENSLAFG00000002267	USB1	100	65.556	ENSUAMG00000016823	USB1	100	65.185	Ursus_americanus
ENSLAFG00000002267	USB1	79	66.822	ENSUMAG00000021369	USB1	100	66.355	Ursus_maritimus
ENSLAFG00000002267	USB1	99	64.684	ENSVVUG00000023700	USB1	91	64.463	Vulpes_vulpes
ENSLAFG00000002267	USB1	80	48.416	ENSXETG00000013795	usb1	99	45.149	Xenopus_tropicalis
ENSLAFG00000002267	USB1	83	41.525	ENSXMAG00000024687	usb1	80	38.314	Xiphophorus_maculatus