EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLAFG00000002588 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Loxodonta_africana
Status: putative
Strand: Minus strand
Length: 9907 bases
Position: chrscaffold_45:10401975-10411881
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLAFP00000002165	PPR	PF01535.20	7.5e-18	1	2
ENSLAFP00000002165	PPR	PF01535.20	7.5e-18	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLAFT00000002588	-	2121	-	ENSLAFP00000002165	706 (aa)	-	G3SQS2

Gene Model

Click here to download ENSLAFG00000002588's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLAFG00000002588's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLAFG00000002588	-	100	70.968	ENSG00000106246	PTCD1	100	70.968	Homo_sapiens
ENSLAFG00000002588	-	100	70.968	ENSG00000248919	ATP5MF-PTCD1	93	70.968	Homo_sapiens
ENSLAFG00000002588	-	86	45.425	ENSAPOG00000010679	ptcd1	86	46.341	Acanthochromis_polyacanthus
ENSLAFG00000002588	-	100	73.803	ENSAMEG00000006224	-	93	73.803	Ailuropoda_melanoleuca
ENSLAFG00000002588	-	87	48.882	ENSACIG00000017861	ptcd1	87	48.882	Amphilophus_citrinellus
ENSLAFG00000002588	-	85	45.336	ENSAOCG00000022617	ptcd1	82	47.257	Amphiprion_ocellaris
ENSLAFG00000002588	-	92	45.701	ENSAOCG00000020741	-	84	47.488	Amphiprion_ocellaris
ENSLAFG00000002588	-	94	45.171	ENSAPEG00000022632	ptcd1	84	47.326	Amphiprion_percula
ENSLAFG00000002588	-	87	47.890	ENSATEG00000007016	ptcd1	81	48.639	Anabas_testudineus
ENSLAFG00000002588	-	84	60.403	ENSAPLG00000006862	-	93	59.900	Anas_platyrhynchos
ENSLAFG00000002588	-	97	54.902	ENSACAG00000012871	-	93	54.028	Anolis_carolinensis
ENSLAFG00000002588	-	98	71.019	ENSANAG00000035790	-	100	69.857	Aotus_nancymaae
ENSLAFG00000002588	-	86	48.214	ENSACLG00000002824	ptcd1	83	48.214	Astatotilapia_calliptera
ENSLAFG00000002588	-	86	46.440	ENSAMXG00000037292	ptcd1	88	46.440	Astyanax_mexicanus
ENSLAFG00000002588	-	100	74.402	ENSBTAG00000020440	-	87	74.402	Bos_taurus
ENSLAFG00000002588	-	100	71.388	ENSCJAG00000015815	-	100	70.112	Callithrix_jacchus
ENSLAFG00000002588	-	100	75.634	ENSCAFG00000015055	-	93	75.493	Canis_familiaris
ENSLAFG00000002588	-	100	75.634	ENSCAFG00020014480	-	93	75.493	Canis_lupus_dingo
ENSLAFG00000002588	-	100	74.402	ENSCHIG00000027000	-	99	74.402	Capra_hircus
ENSLAFG00000002588	-	100	74.262	ENSTSYG00000029495	-	100	74.262	Carlito_syrichta
ENSLAFG00000002588	-	93	72.382	ENSCAPG00000014660	-	98	72.755	Cavia_aperea
ENSLAFG00000002588	-	100	71.730	ENSCPOG00000001780	-	100	71.308	Cavia_porcellus
ENSLAFG00000002588	-	100	70.168	ENSCCAG00000034025	-	100	70.028	Cebus_capucinus
ENSLAFG00000002588	-	99	70.721	ENSCATG00000040859	-	99	71.146	Cercocebus_atys
ENSLAFG00000002588	-	98	73.496	ENSCLAG00000006354	-	100	72.293	Chinchilla_lanigera
ENSLAFG00000002588	-	92	70.489	ENSCSAG00000017794	-	95	70.948	Chlorocebus_sabaeus
ENSLAFG00000002588	-	86	61.244	ENSCPBG00000020866	-	84	61.244	Chrysemys_picta_bellii
ENSLAFG00000002588	-	75	32.117	ENSCING00000007717	-	90	32.299	Ciona_intestinalis
ENSLAFG00000002588	-	100	70.084	ENSCANG00000023441	-	100	70.506	Colobus_angolensis_palliatus
ENSLAFG00000002588	-	100	69.748	ENSCGRG00001023686	Ptcd1	100	68.908	Cricetulus_griseus_chok1gshd
ENSLAFG00000002588	-	99	70.522	ENSCGRG00000015031	Ptcd1	99	70.522	Cricetulus_griseus_crigri
ENSLAFG00000002588	-	90	45.283	ENSCSEG00000002378	ptcd1	81	47.306	Cynoglossus_semilaevis
ENSLAFG00000002588	-	87	45.955	ENSCVAG00000003621	ptcd1	89	45.955	Cyprinodon_variegatus
ENSLAFG00000002588	-	86	46.809	ENSCVAG00000015826	ptcd1	83	46.809	Cyprinodon_variegatus
ENSLAFG00000002588	-	86	49.427	ENSDARG00000076176	ptcd1	87	49.427	Danio_rerio
ENSLAFG00000002588	-	100	72.587	ENSDNOG00000009957	-	100	73.212	Dasypus_novemcinctus
ENSLAFG00000002588	-	98	69.584	ENSDORG00000000740	Ptcd1	99	68.867	Dipodomys_ordii
ENSLAFG00000002588	-	89	38.617	ENSEBUG00000014515	ptcd1	97	40.440	Eptatretus_burgeri
ENSLAFG00000002588	-	100	76.512	ENSEASG00005002480	-	100	76.512	Equus_asinus_asinus
ENSLAFG00000002588	-	100	76.934	ENSECAG00000016617	-	100	76.934	Equus_caballus
ENSLAFG00000002588	-	86	46.395	ENSELUG00000016517	ptcd1	84	46.395	Esox_lucius
ENSLAFG00000002588	-	100	74.930	ENSFCAG00000015069	-	100	74.930	Felis_catus
ENSLAFG00000002588	-	87	58.685	ENSFALG00000013803	-	87	59.271	Ficedula_albicollis
ENSLAFG00000002588	-	100	71.589	ENSFDAG00000006393	-	100	71.167	Fukomys_damarensis
ENSLAFG00000002588	-	74	49.240	ENSFHEG00000012491	ptcd1	87	49.240	Fundulus_heteroclitus
ENSLAFG00000002588	-	82	46.128	ENSGMOG00000007639	ptcd1	91	46.128	Gadus_morhua
ENSLAFG00000002588	-	86	59.019	ENSGALG00000004711	-	87	59.019	Gallus_gallus
ENSLAFG00000002588	-	83	47.826	ENSGAFG00000013175	ptcd1	82	47.826	Gambusia_affinis
ENSLAFG00000002588	-	88	47.393	ENSGACG00000016607	ptcd1	91	49.094	Gasterosteus_aculeatus
ENSLAFG00000002588	-	80	58.773	ENSGAGG00000021832	-	85	58.944	Gopherus_agassizii
ENSLAFG00000002588	-	99	71.589	ENSGGOG00000015123	-	99	71.589	Gorilla_gorilla
ENSLAFG00000002588	-	85	48.191	ENSHBUG00000018275	ptcd1	82	48.191	Haplochromis_burtoni
ENSLAFG00000002588	-	100	71.770	ENSHGLG00000017621	-	100	71.148	Heterocephalus_glaber_female
ENSLAFG00000002588	-	100	71.770	ENSHGLG00100007218	-	100	71.148	Heterocephalus_glaber_male
ENSLAFG00000002588	-	83	47.208	ENSHCOG00000010784	ptcd1	82	47.208	Hippocampus_comes
ENSLAFG00000002588	-	100	74.330	ENSSTOG00000001682	-	100	74.330	Ictidomys_tridecemlineatus
ENSLAFG00000002588	-	100	70.339	ENSJJAG00000000319	Ptcd1	100	70.099	Jaculus_jaculus
ENSLAFG00000002588	-	86	46.906	ENSKMAG00000008708	ptcd1	83	46.906	Kryptolebias_marmoratus
ENSLAFG00000002588	-	93	45.345	ENSLBEG00000008061	ptcd1	84	47.049	Labrus_bergylta
ENSLAFG00000002588	-	87	58.307	ENSLACG00000011172	ptcd1	86	58.786	Latimeria_chalumnae
ENSLAFG00000002588	-	93	53.170	ENSLOCG00000004833	ptcd1	97	53.503	Lepisosteus_oculatus
ENSLAFG00000002588	-	99	70.438	ENSMFAG00000041324	-	99	69.873	Macaca_fascicularis
ENSLAFG00000002588	-	99	70.297	ENSMMUG00000030408	-	99	70.438	Macaca_mulatta
ENSLAFG00000002588	-	99	70.438	ENSMNEG00000043786	-	99	69.873	Macaca_nemestrina
ENSLAFG00000002588	-	99	52.825	ENSMLEG00000031179	-	99	54.096	Mandrillus_leucophaeus
ENSLAFG00000002588	-	84	49.833	ENSMAMG00000007623	ptcd1	81	49.833	Mastacembelus_armatus
ENSLAFG00000002588	-	86	48.052	ENSMZEG00005012722	ptcd1	83	48.052	Maylandia_zebra
ENSLAFG00000002588	-	91	58.459	ENSMGAG00000004211	-	85	58.436	Meleagris_gallopavo
ENSLAFG00000002588	-	99	73.796	ENSMICG00000017428	-	99	73.191	Microcebus_murinus
ENSLAFG00000002588	-	89	45.024	ENSMMOG00000020243	ptcd1	90	46.798	Mola_mola
ENSLAFG00000002588	-	99	57.412	ENSMODG00000001350	-	89	61.538	Monodelphis_domestica
ENSLAFG00000002588	-	95	46.154	ENSMALG00000018442	ptcd1	81	49.175	Monopterus_albus
ENSLAFG00000002588	-	99	70.455	MGP_CAROLIEiJ_G0028011	Ptcd1	99	70.680	Mus_caroli
ENSLAFG00000002588	-	99	70.739	ENSMUSG00000029624	Ptcd1	99	70.963	Mus_musculus
ENSLAFG00000002588	-	100	69.480	MGP_PahariEiJ_G0024580	Ptcd1	100	69.761	Mus_pahari
ENSLAFG00000002588	-	99	70.397	MGP_SPRETEiJ_G0029012	Ptcd1	99	71.105	Mus_spretus
ENSLAFG00000002588	-	100	73.662	ENSMPUG00000016518	-	100	73.662	Mustela_putorius_furo
ENSLAFG00000002588	-	100	75.527	ENSMLUG00000010994	-	94	75.668	Myotis_lucifugus
ENSLAFG00000002588	-	85	47.961	ENSNBRG00000010079	ptcd1	86	47.961	Neolamprologus_brichardi
ENSLAFG00000002588	-	99	77.615	ENSNLEG00000011060	-	99	77.615	Nomascus_leucogenys
ENSLAFG00000002588	-	98	60.171	ENSMEUG00000006930	-	99	60.171	Notamacropus_eugenii
ENSLAFG00000002588	-	90	75.174	ENSOPRG00000013647	-	90	75.174	Ochotona_princeps
ENSLAFG00000002588	-	83	47.059	ENSONIG00000003168	ptcd1	95	47.059	Oreochromis_niloticus
ENSLAFG00000002588	-	79	57.968	ENSOANG00000007728	-	73	57.968	Ornithorhynchus_anatinus
ENSLAFG00000002588	-	99	72.496	ENSOCUG00000010584	-	98	72.496	Oryctolagus_cuniculus
ENSLAFG00000002588	-	86	47.720	ENSORLG00000009275	ptcd1	86	47.720	Oryzias_latipes
ENSLAFG00000002588	-	86	47.549	ENSORLG00020000988	ptcd1	86	47.549	Oryzias_latipes_hni
ENSLAFG00000002588	-	86	47.222	ENSORLG00015010557	ptcd1	86	47.222	Oryzias_latipes_hsok
ENSLAFG00000002588	-	83	48.161	ENSOMEG00000020627	ptcd1	85	48.161	Oryzias_melastigma
ENSLAFG00000002588	-	99	71.307	ENSOGAG00000010877	-	100	69.803	Otolemur_garnettii
ENSLAFG00000002588	-	100	68.917	ENSOARG00000018676	-	100	68.917	Ovis_aries
ENSLAFG00000002588	-	100	70.827	ENSPPAG00000036024	-	100	70.827	Pan_paniscus
ENSLAFG00000002588	-	100	74.225	ENSPPRG00000003478	-	100	73.521	Panthera_pardus
ENSLAFG00000002588	-	100	70.687	ENSPTRG00000019452	-	100	70.687	Pan_troglodytes
ENSLAFG00000002588	-	99	70.721	ENSPANG00000016730	-	99	70.156	Papio_anubis
ENSLAFG00000002588	-	85	53.947	ENSPKIG00000014215	ptcd1	87	53.947	Paramormyrops_kingsleyae
ENSLAFG00000002588	-	85	59.901	ENSPSIG00000011184	-	100	60.231	Pelodiscus_sinensis
ENSLAFG00000002588	-	73	42.125	ENSPMAG00000009667	ptcd1	100	42.125	Petromyzon_marinus
ENSLAFG00000002588	-	92	61.276	ENSPCIG00000024778	-	89	61.353	Phascolarctos_cinereus
ENSLAFG00000002588	-	76	48.807	ENSPFOG00000004458	ptcd1	83	47.195	Poecilia_formosa
ENSLAFG00000002588	-	76	48.991	ENSPLAG00000011051	ptcd1	82	47.906	Poecilia_latipinna
ENSLAFG00000002588	-	85	47.195	ENSPMEG00000020547	ptcd1	83	47.195	Poecilia_mexicana
ENSLAFG00000002588	-	82	47.966	ENSPREG00000000059	ptcd1	82	47.731	Poecilia_reticulata
ENSLAFG00000002588	-	93	72.549	ENSPPYG00000017377	-	97	73.292	Pongo_abelii
ENSLAFG00000002588	-	80	79.358	ENSPCAG00000001852	-	89	79.358	Procavia_capensis
ENSLAFG00000002588	-	99	73.305	ENSPCOG00000018596	-	99	72.316	Propithecus_coquereli
ENSLAFG00000002588	-	67	87.000	ENSPVAG00000007529	-	73	87.000	Pteropus_vampyrus
ENSLAFG00000002588	-	85	48.684	ENSPNYG00000019993	ptcd1	82	48.684	Pundamilia_nyererei
ENSLAFG00000002588	-	93	49.037	ENSPNAG00000014931	ptcd1	91	49.921	Pygocentrus_nattereri
ENSLAFG00000002588	-	98	71.511	ENSRNOG00000000987	Ptcd1	98	71.367	Rattus_norvegicus
ENSLAFG00000002588	-	99	70.780	ENSRBIG00000043393	-	99	70.213	Rhinopithecus_bieti
ENSLAFG00000002588	-	99	70.496	ENSRROG00000036420	-	99	70.922	Rhinopithecus_roxellana
ENSLAFG00000002588	-	100	71.248	ENSSBOG00000024114	-	100	69.972	Saimiri_boliviensis_boliviensis
ENSLAFG00000002588	-	99	55.780	ENSSHAG00000011376	-	93	61.859	Sarcophilus_harrisii
ENSLAFG00000002588	-	98	50.210	ENSSFOG00015007909	ptcd1	84	53.918	Scleropages_formosus
ENSLAFG00000002588	-	86	45.250	ENSSMAG00000000218	ptcd1	94	45.411	Scophthalmus_maximus
ENSLAFG00000002588	-	99	44.382	ENSSDUG00000015671	ptcd1	96	43.820	Seriola_dumerili
ENSLAFG00000002588	-	92	45.551	ENSSLDG00000014261	ptcd1	87	46.656	Seriola_lalandi_dorsalis
ENSLAFG00000002588	-	93	55.394	ENSSPUG00000003540	-	84	58.439	Sphenodon_punctatus
ENSLAFG00000002588	-	95	45.441	ENSSPAG00000011049	ptcd1	88	44.853	Stegastes_partitus
ENSLAFG00000002588	-	93	75.301	ENSSSCG00000007622	-	99	75.301	Sus_scrofa
ENSLAFG00000002588	-	86	59.869	ENSTGUG00000007563	-	99	60.359	Taeniopygia_guttata
ENSLAFG00000002588	-	90	47.833	ENSTRUG00000013471	ptcd1	86	47.833	Takifugu_rubripes
ENSLAFG00000002588	-	92	46.260	ENSTNIG00000008271	ptcd1	92	46.260	Tetraodon_nigroviridis
ENSLAFG00000002588	-	100	72.129	ENSTBEG00000011021	-	100	71.289	Tupaia_belangeri
ENSLAFG00000002588	-	100	71.449	ENSTTRG00000003006	-	100	70.687	Tursiops_truncatus
ENSLAFG00000002588	-	100	73.944	ENSUAMG00000008049	-	100	73.944	Ursus_americanus
ENSLAFG00000002588	-	99	75.603	ENSVVUG00000008836	-	99	75.461	Vulpes_vulpes
ENSLAFG00000002588	-	84	54.377	ENSXETG00000009891	ptcd1	87	53.871	Xenopus_tropicalis
ENSLAFG00000002588	-	76	48.073	ENSXMAG00000015540	ptcd1	85	45.719	Xiphophorus_maculatus