EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLAFG00000003340 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Loxodonta_africana
Status: putative
Strand: Plus strand
Length: 17650 bases
Position: chrscaffold_71:6898332-6915981
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLAFP00000002777	zf-met	PF12874.7	0.00017	1	1
ENSLAFP00000002777	PAP_assoc	PF03828.19	1.1e-05	1	1
ENSLAFP00000002777	RRM_1	PF00076.22	8.2e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLAFT00000003340	-	2610	-	ENSLAFP00000002777	869 (aa)	-	G3SS67

Gene Model

Click here to download ENSLAFG00000003340's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLAFG00000003340's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLAFG00000003340	-	56	32.911	ENSLAFG00000013452	MTPAP	83	35.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLAFG00000003340	-	99	88.774	ENSG00000149016	TUT1	100	90.667	Homo_sapiens
ENSLAFG00000003340	-	75	47.111	ENSAPOG00000016423	tut1	67	45.581	Acanthochromis_polyacanthus
ENSLAFG00000003340	-	100	88.202	ENSAMEG00000006723	-	100	88.202	Ailuropoda_melanoleuca
ENSLAFG00000003340	-	63	48.879	ENSACIG00000000948	tut1	63	48.980	Amphilophus_citrinellus
ENSLAFG00000003340	-	94	47.085	ENSAOCG00000021912	tut1	67	45.540	Amphiprion_ocellaris
ENSLAFG00000003340	-	94	47.085	ENSAPEG00000005144	tut1	68	45.540	Amphiprion_percula
ENSLAFG00000003340	-	89	46.667	ENSATEG00000014590	tut1	63	46.939	Anabas_testudineus
ENSLAFG00000003340	-	99	87.858	ENSANAG00000029063	-	99	88.316	Aotus_nancymaae
ENSLAFG00000003340	-	89	47.511	ENSACLG00000013406	tut1	95	45.540	Astatotilapia_calliptera
ENSLAFG00000003340	-	87	48.069	ENSAMXG00000042139	tut1	92	48.341	Astyanax_mexicanus
ENSLAFG00000003340	-	100	87.529	ENSBTAG00000011846	TUT1	100	87.757	Bos_taurus
ENSLAFG00000003340	-	99	88.087	ENSCJAG00000033294	-	99	88.087	Callithrix_jacchus
ENSLAFG00000003340	-	100	86.857	ENSCAFG00000015822	TUT1	100	86.971	Canis_familiaris
ENSLAFG00000003340	-	100	86.857	ENSCAFG00020013039	-	100	86.971	Canis_lupus_dingo
ENSLAFG00000003340	-	100	87.872	ENSCHIG00000006765	-	100	87.986	Capra_hircus
ENSLAFG00000003340	-	100	82.609	ENSTSYG00000000147	-	96	82.609	Carlito_syrichta
ENSLAFG00000003340	-	79	79.365	ENSCAPG00000013001	-	99	79.480	Cavia_aperea
ENSLAFG00000003340	-	100	74.201	ENSCPOG00000014281	-	99	75.342	Cavia_porcellus
ENSLAFG00000003340	-	99	88.774	ENSCCAG00000018819	-	96	89.233	Cebus_capucinus
ENSLAFG00000003340	-	99	89.003	ENSCATG00000036770	-	96	89.118	Cercocebus_atys
ENSLAFG00000003340	-	100	74.282	ENSCLAG00000000215	-	99	74.971	Chinchilla_lanigera
ENSLAFG00000003340	-	90	88.691	ENSCSAG00000006566	-	99	88.818	Chlorocebus_sabaeus
ENSLAFG00000003340	-	74	81.687	ENSCHOG00000007746	-	72	82.169	Choloepus_hoffmanni
ENSLAFG00000003340	-	71	60.619	ENSCPBG00000017909	-	76	62.353	Chrysemys_picta_bellii
ENSLAFG00000003340	-	99	88.826	ENSCANG00000043244	-	96	88.940	Colobus_angolensis_palliatus
ENSLAFG00000003340	-	100	76.196	ENSCGRG00001017583	Tut1	100	76.196	Cricetulus_griseus_chok1gshd
ENSLAFG00000003340	-	100	76.196	ENSCGRG00000015008	Tut1	100	76.196	Cricetulus_griseus_crigri
ENSLAFG00000003340	-	62	46.567	ENSCSEG00000012807	tut1	63	48.639	Cynoglossus_semilaevis
ENSLAFG00000003340	-	85	45.798	ENSCVAG00000005396	tut1	68	45.205	Cyprinodon_variegatus
ENSLAFG00000003340	-	91	47.881	ENSDARG00000057321	tut1	94	47.664	Danio_rerio
ENSLAFG00000003340	-	100	88.545	ENSDNOG00000038908	-	100	88.545	Dasypus_novemcinctus
ENSLAFG00000003340	-	100	82.971	ENSDORG00000004018	Tut1	98	82.971	Dipodomys_ordii
ENSLAFG00000003340	-	70	43.902	ENSEBUG00000014170	tut1	63	42.762	Eptatretus_burgeri
ENSLAFG00000003340	-	100	88.101	ENSEASG00005007531	-	100	89.588	Equus_asinus_asinus
ENSLAFG00000003340	-	100	88.330	ENSECAG00000009471	-	98	89.817	Equus_caballus
ENSLAFG00000003340	-	99	81.537	ENSEEUG00000001238	-	99	81.537	Erinaceus_europaeus
ENSLAFG00000003340	-	88	39.403	ENSELUG00000011532	tut1	96	47.005	Esox_lucius
ENSLAFG00000003340	-	100	87.757	ENSFCAG00000008859	-	96	87.757	Felis_catus
ENSLAFG00000003340	-	90	77.406	ENSFDAG00000021131	-	100	69.942	Fukomys_damarensis
ENSLAFG00000003340	-	84	45.957	ENSFHEG00000006279	tut1	81	45.370	Fundulus_heteroclitus
ENSLAFG00000003340	-	87	39.254	ENSGMOG00000013378	tut1	64	50.000	Gadus_morhua
ENSLAFG00000003340	-	73	46.131	ENSGACG00000009956	tut1	65	48.123	Gasterosteus_aculeatus
ENSLAFG00000003340	-	85	48.611	ENSGAGG00000007912	-	88	57.209	Gopherus_agassizii
ENSLAFG00000003340	-	99	88.431	ENSGGOG00000013564	-	96	88.889	Gorilla_gorilla
ENSLAFG00000003340	-	89	47.059	ENSHBUG00000022855	tut1	95	45.070	Haplochromis_burtoni
ENSLAFG00000003340	-	100	74.543	ENSHGLG00000002742	-	99	74.914	Heterocephalus_glaber_female
ENSLAFG00000003340	-	100	73.864	ENSHGLG00100017588	-	99	75.482	Heterocephalus_glaber_male
ENSLAFG00000003340	-	68	40.820	ENSHCOG00000016358	tut1	64	47.097	Hippocampus_comes
ENSLAFG00000003340	-	58	48.875	ENSIPUG00000017671	tut1	62	51.273	Ictalurus_punctatus
ENSLAFG00000003340	-	99	86.857	ENSSTOG00000002859	-	100	86.857	Ictidomys_tridecemlineatus
ENSLAFG00000003340	-	100	83.771	ENSJJAG00000022329	Tut1	100	83.886	Jaculus_jaculus
ENSLAFG00000003340	-	70	48.505	ENSKMAG00000010023	tut1	63	48.299	Kryptolebias_marmoratus
ENSLAFG00000003340	-	77	43.694	ENSLBEG00000014969	tut1	67	43.458	Labrus_bergylta
ENSLAFG00000003340	-	80	45.819	ENSLACG00000011278	tut1	83	45.946	Latimeria_chalumnae
ENSLAFG00000003340	-	91	49.362	ENSLOCG00000013105	tut1	76	52.759	Lepisosteus_oculatus
ENSLAFG00000003340	-	99	89.003	ENSMFAG00000000912	-	96	89.118	Macaca_fascicularis
ENSLAFG00000003340	-	99	88.774	ENSMMUG00000006595	-	100	89.333	Macaca_mulatta
ENSLAFG00000003340	-	99	89.003	ENSMNEG00000029841	-	96	89.118	Macaca_nemestrina
ENSLAFG00000003340	-	99	88.889	ENSMLEG00000040498	-	96	89.003	Mandrillus_leucophaeus
ENSLAFG00000003340	-	89	46.222	ENSMAMG00000008173	tut1	63	47.959	Mastacembelus_armatus
ENSLAFG00000003340	-	89	47.511	ENSMZEG00005009777	tut1	95	45.540	Maylandia_zebra
ENSLAFG00000003340	-	90	82.500	ENSMAUG00000012453	Tut1	100	82.500	Mesocricetus_auratus
ENSLAFG00000003340	-	99	87.271	ENSMICG00000009841	-	96	87.729	Microcebus_murinus
ENSLAFG00000003340	-	100	76.765	ENSMOCG00000015834	Tut1	100	76.765	Microtus_ochrogaster
ENSLAFG00000003340	-	70	48.333	ENSMMOG00000002589	tut1	62	48.123	Mola_mola
ENSLAFG00000003340	-	99	68.807	ENSMODG00000007710	-	99	69.108	Monodelphis_domestica
ENSLAFG00000003340	-	70	47.788	ENSMALG00000003624	tut1	63	47.157	Monopterus_albus
ENSLAFG00000003340	-	100	76.250	MGP_CAROLIEiJ_G0022670	Tut1	100	76.364	Mus_caroli
ENSLAFG00000003340	-	100	77.159	ENSMUSG00000071645	Tut1	100	77.159	Mus_musculus
ENSLAFG00000003340	-	100	78.132	MGP_PahariEiJ_G0014164	Tut1	100	78.132	Mus_pahari
ENSLAFG00000003340	-	100	76.932	MGP_SPRETEiJ_G0023583	Tut1	100	76.932	Mus_spretus
ENSLAFG00000003340	-	100	86.957	ENSMPUG00000013938	-	100	86.827	Mustela_putorius_furo
ENSLAFG00000003340	-	100	72.717	ENSMLUG00000000349	-	100	72.945	Myotis_lucifugus
ENSLAFG00000003340	-	100	81.911	ENSNGAG00000002988	Tut1	100	81.911	Nannospalax_galili
ENSLAFG00000003340	-	89	47.964	ENSNBRG00000022055	tut1	95	46.009	Neolamprologus_brichardi
ENSLAFG00000003340	-	99	88.660	ENSNLEG00000003780	-	96	89.118	Nomascus_leucogenys
ENSLAFG00000003340	-	92	78.487	ENSMEUG00000012756	-	91	78.487	Notamacropus_eugenii
ENSLAFG00000003340	-	67	88.829	ENSOPRG00000011835	-	74	87.928	Ochotona_princeps
ENSLAFG00000003340	-	99	72.571	ENSODEG00000002204	-	100	71.757	Octodon_degus
ENSLAFG00000003340	-	89	48.636	ENSONIG00000019913	tut1	95	46.698	Oreochromis_niloticus
ENSLAFG00000003340	-	56	73.006	ENSOANG00000012458	-	97	73.006	Ornithorhynchus_anatinus
ENSLAFG00000003340	-	99	84.000	ENSOCUG00000017215	-	99	84.667	Oryctolagus_cuniculus
ENSLAFG00000003340	-	65	44.395	ENSORLG00000004342	tut1	67	44.345	Oryzias_latipes
ENSLAFG00000003340	-	94	44.395	ENSORLG00015018834	tut1	67	44.048	Oryzias_latipes_hsok
ENSLAFG00000003340	-	94	44.395	ENSOMEG00000005129	tut1	99	42.723	Oryzias_melastigma
ENSLAFG00000003340	-	100	86.108	ENSOGAG00000000828	-	100	86.108	Otolemur_garnettii
ENSLAFG00000003340	-	100	84.276	ENSOARG00000015269	-	100	84.389	Ovis_aries
ENSLAFG00000003340	-	99	88.889	ENSPPAG00000037200	-	96	89.347	Pan_paniscus
ENSLAFG00000003340	-	100	87.872	ENSPPRG00000000257	-	100	87.872	Panthera_pardus
ENSLAFG00000003340	-	100	87.986	ENSPTIG00000017573	-	96	87.986	Panthera_tigris_altaica
ENSLAFG00000003340	-	99	88.889	ENSPTRG00000003770	TUT1	96	89.347	Pan_troglodytes
ENSLAFG00000003340	-	90	86.906	ENSPANG00000010908	-	92	86.839	Papio_anubis
ENSLAFG00000003340	-	90	50.901	ENSPKIG00000022062	tut1	63	49.065	Paramormyrops_kingsleyae
ENSLAFG00000003340	-	96	47.956	ENSPSIG00000004972	-	86	53.434	Pelodiscus_sinensis
ENSLAFG00000003340	-	73	46.429	ENSPMGG00000004299	tut1	68	45.426	Periophthalmus_magnuspinnatus
ENSLAFG00000003340	-	100	77.677	ENSPEMG00000018332	Tut1	100	77.677	Peromyscus_maniculatus_bairdii
ENSLAFG00000003340	-	79	47.407	ENSPMAG00000005825	tut1	58	49.827	Petromyzon_marinus
ENSLAFG00000003340	-	100	66.705	ENSPCIG00000017805	-	99	67.503	Phascolarctos_cinereus
ENSLAFG00000003340	-	92	47.059	ENSPFOG00000016195	tut1	68	45.860	Poecilia_formosa
ENSLAFG00000003340	-	92	47.059	ENSPLAG00000022064	tut1	68	45.860	Poecilia_latipinna
ENSLAFG00000003340	-	92	47.273	ENSPMEG00000019175	tut1	68	46.178	Poecilia_mexicana
ENSLAFG00000003340	-	94	47.511	ENSPREG00000020464	tut1	66	47.492	Poecilia_reticulata
ENSLAFG00000003340	-	99	89.106	ENSPPYG00000003162	-	99	89.106	Pongo_abelii
ENSLAFG00000003340	-	97	90.284	ENSPCAG00000002956	-	100	90.284	Procavia_capensis
ENSLAFG00000003340	-	99	86.152	ENSPCOG00000017464	-	97	86.606	Propithecus_coquereli
ENSLAFG00000003340	-	85	87.780	ENSPVAG00000003444	-	85	87.780	Pteropus_vampyrus
ENSLAFG00000003340	-	89	46.606	ENSPNYG00000018764	tut1	95	44.601	Pundamilia_nyererei
ENSLAFG00000003340	-	70	51.142	ENSPNAG00000011889	tut1	64	49.763	Pygocentrus_nattereri
ENSLAFG00000003340	-	100	77.904	ENSRNOG00000020047	Tut1	100	77.790	Rattus_norvegicus
ENSLAFG00000003340	-	99	88.940	ENSRBIG00000021240	-	96	89.054	Rhinopithecus_bieti
ENSLAFG00000003340	-	99	88.940	ENSRROG00000043315	-	99	89.054	Rhinopithecus_roxellana
ENSLAFG00000003340	-	99	88.087	ENSSBOG00000003827	-	99	88.545	Saimiri_boliviensis_boliviensis
ENSLAFG00000003340	-	97	68.415	ENSSHAG00000003368	-	99	68.765	Sarcophilus_harrisii
ENSLAFG00000003340	-	87	52.915	ENSSFOG00015005639	tut1	88	51.643	Scleropages_formosus
ENSLAFG00000003340	-	74	44.395	ENSSMAG00000011449	tut1	95	42.723	Scophthalmus_maximus
ENSLAFG00000003340	-	88	45.794	ENSSDUG00000003613	tut1	67	45.794	Seriola_dumerili
ENSLAFG00000003340	-	88	45.794	ENSSLDG00000022487	tut1	67	45.794	Seriola_lalandi_dorsalis
ENSLAFG00000003340	-	86	55.605	ENSSPUG00000008143	-	90	53.953	Sphenodon_punctatus
ENSLAFG00000003340	-	79	47.534	ENSSPAG00000023390	tut1	63	48.299	Stegastes_partitus
ENSLAFG00000003340	-	90	87.433	ENSSSCG00000013063	-	100	87.360	Sus_scrofa
ENSLAFG00000003340	-	89	45.000	ENSTRUG00000016451	tut1	63	49.660	Takifugu_rubripes
ENSLAFG00000003340	-	72	42.523	ENSTNIG00000012852	tut1	99	42.679	Tetraodon_nigroviridis
ENSLAFG00000003340	-	100	84.192	ENSTTRG00000002460	-	100	84.422	Tursiops_truncatus
ENSLAFG00000003340	-	100	87.858	ENSUAMG00000027237	-	100	87.858	Ursus_americanus
ENSLAFG00000003340	-	100	87.858	ENSUMAG00000012710	-	100	87.858	Ursus_maritimus
ENSLAFG00000003340	-	77	88.262	ENSVPAG00000005413	-	100	88.262	Vicugna_pacos
ENSLAFG00000003340	-	100	86.514	ENSVVUG00000029882	-	100	87.200	Vulpes_vulpes
ENSLAFG00000003340	-	86	50.476	ENSXETG00000005640	tut1	87	50.476	Xenopus_tropicalis
ENSLAFG00000003340	-	52	39.958	ENSXCOG00000017824	tut1	78	59.504	Xiphophorus_couchianus
ENSLAFG00000003340	-	92	47.964	ENSXMAG00000027272	tut1	99	46.009	Xiphophorus_maculatus