EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLAFG00000003425 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Loxodonta_africana
Status: putative
Strand: Minus strand
Length: 17963 bases
Position: chrscaffold_7:73490604-73508566
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLAFP00000002850	SMN	PF06003.12	4e-107	1	1
ENSLAFP00000021572	SMN	PF06003.12	4.5e-43	1	2
ENSLAFP00000021572	SMN	PF06003.12	4.5e-43	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLAFT00000003424	-	915	-	ENSLAFP00000002850	304 (aa)	-	G3SSC9
ENSLAFT00000032524	-	426	-	ENSLAFP00000021572	142 (aa)	-	G3U164

Gene Model

Click here to download ENSLAFG00000003425's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLAFG00000003425's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLAFG00000003425	-	100	81.690	ENSG00000205571	SMN2	99	85.714	Homo_sapiens
ENSLAFG00000003425	-	100	81.690	ENSG00000172062	SMN1	99	85.714	Homo_sapiens
ENSLAFG00000003425	-	89	52.574	ENSAPOG00000011324	smn1	94	53.455	Acanthochromis_polyacanthus
ENSLAFG00000003425	-	100	86.885	ENSAMEG00000003316	-	97	88.136	Ailuropoda_melanoleuca
ENSLAFG00000003425	-	99	36.782	ENSACIG00000019772	-	97	47.925	Amphilophus_citrinellus
ENSLAFG00000003425	-	89	52.857	ENSAOCG00000024444	smn1	94	52.381	Amphiprion_ocellaris
ENSLAFG00000003425	-	89	53.214	ENSAPEG00000016504	smn1	94	52.747	Amphiprion_percula
ENSLAFG00000003425	-	86	52.747	ENSATEG00000002182	smn1	79	52.273	Anabas_testudineus
ENSLAFG00000003425	-	99	45.238	ENSAPLG00000010912	-	97	56.436	Anas_platyrhynchos
ENSLAFG00000003425	-	99	51.852	ENSACAG00000010017	-	95	58.865	Anolis_carolinensis
ENSLAFG00000003425	-	99	80.142	ENSANAG00000032133	-	99	80.537	Aotus_nancymaae
ENSLAFG00000003425	-	88	51.119	ENSACLG00000007308	smn1	90	50.000	Astatotilapia_calliptera
ENSLAFG00000003425	-	93	82.168	ENSBTAG00000005743	SMN2	99	82.131	Bos_taurus
ENSLAFG00000003425	-	99	80.142	ENSCJAG00000016290	-	99	86.813	Callithrix_jacchus
ENSLAFG00000003425	-	96	86.689	ENSCAFG00000007812	SMN	100	86.689	Canis_familiaris
ENSLAFG00000003425	-	96	86.644	ENSCAFG00020019229	-	93	86.644	Canis_lupus_dingo
ENSLAFG00000003425	-	93	82.292	ENSCHIG00000015559	-	100	81.063	Capra_hircus
ENSLAFG00000003425	-	100	84.507	ENSTSYG00000012058	-	99	90.909	Carlito_syrichta
ENSLAFG00000003425	-	100	57.485	ENSCAPG00000011021	-	95	68.493	Cavia_aperea
ENSLAFG00000003425	-	97	79.461	ENSCPOG00000036973	-	100	79.461	Cavia_porcellus
ENSLAFG00000003425	-	96	79.333	ENSCPOG00000012328	-	100	79.333	Cavia_porcellus
ENSLAFG00000003425	-	99	80.142	ENSCCAG00000018127	-	99	86.813	Cebus_capucinus
ENSLAFG00000003425	-	100	81.690	ENSCATG00000037002	-	99	86.813	Cercocebus_atys
ENSLAFG00000003425	-	100	77.465	ENSCLAG00000000284	-	100	78.000	Chinchilla_lanigera
ENSLAFG00000003425	-	93	84.561	ENSCSAG00000015688	-	99	83.446	Chlorocebus_sabaeus
ENSLAFG00000003425	-	100	67.816	ENSCHOG00000007346	-	66	85.380	Choloepus_hoffmanni
ENSLAFG00000003425	-	97	62.791	ENSCPBG00000010968	-	99	63.004	Chrysemys_picta_bellii
ENSLAFG00000003425	-	100	80.986	ENSCANG00000038242	-	99	86.813	Colobus_angolensis_palliatus
ENSLAFG00000003425	-	100	69.930	ENSCANG00000033324	-	95	77.544	Colobus_angolensis_palliatus
ENSLAFG00000003425	-	96	80.952	ENSCGRG00001017959	-	100	80.952	Cricetulus_griseus_chok1gshd
ENSLAFG00000003425	-	96	63.014	ENSCGRG00001016998	-	100	63.356	Cricetulus_griseus_chok1gshd
ENSLAFG00000003425	-	96	80.952	ENSCGRG00000007698	Smn1	100	80.952	Cricetulus_griseus_crigri
ENSLAFG00000003425	-	89	47.569	ENSCSEG00000015227	smn1	96	48.601	Cynoglossus_semilaevis
ENSLAFG00000003425	-	89	51.071	ENSCVAG00000007498	smn1	94	51.246	Cyprinodon_variegatus
ENSLAFG00000003425	-	90	51.971	ENSDARG00000018494	smn1	95	51.812	Danio_rerio
ENSLAFG00000003425	-	100	67.836	ENSDNOG00000007283	-	100	86.066	Dasypus_novemcinctus
ENSLAFG00000003425	-	77	71.489	ENSDNOG00000045949	-	97	71.674	Dasypus_novemcinctus
ENSLAFG00000003425	-	93	75.439	ENSDORG00000007082	Smn1	99	75.000	Dipodomys_ordii
ENSLAFG00000003425	-	76	77.778	ENSETEG00000001406	-	92	76.410	Echinops_telfairi
ENSLAFG00000003425	-	99	33.125	ENSEBUG00000011902	smn1	55	31.138	Eptatretus_burgeri
ENSLAFG00000003425	-	90	76.703	ENSEASG00005018000	-	97	75.352	Equus_asinus_asinus
ENSLAFG00000003425	-	96	84.068	ENSECAG00000015215	-	100	84.068	Equus_caballus
ENSLAFG00000003425	-	83	78.261	ENSEEUG00000015777	-	100	78.261	Erinaceus_europaeus
ENSLAFG00000003425	-	89	53.405	ENSELUG00000018067	smn1	94	51.613	Esox_lucius
ENSLAFG00000003425	-	100	83.099	ENSFCAG00000028292	SMN	100	86.395	Felis_catus
ENSLAFG00000003425	-	87	60.755	ENSFALG00000012320	-	91	60.755	Ficedula_albicollis
ENSLAFG00000003425	-	97	79.333	ENSFDAG00000017683	-	100	79.333	Fukomys_damarensis
ENSLAFG00000003425	-	99	36.517	ENSFHEG00000018508	smn1	97	50.000	Fundulus_heteroclitus
ENSLAFG00000003425	-	92	49.110	ENSGMOG00000017279	smn1	95	46.454	Gadus_morhua
ENSLAFG00000003425	-	89	61.538	ENSGALG00000002430	SMN	95	59.341	Gallus_gallus
ENSLAFG00000003425	-	99	45.333	ENSGAFG00000009501	smn1	94	50.362	Gambusia_affinis
ENSLAFG00000003425	-	89	51.460	ENSGACG00000010584	smn1	91	52.399	Gasterosteus_aculeatus
ENSLAFG00000003425	-	99	31.250	ENSGAGG00000013639	-	56	50.746	Gopherus_agassizii
ENSLAFG00000003425	-	95	62.373	ENSGAGG00000011374	-	99	61.356	Gopherus_agassizii
ENSLAFG00000003425	-	62	83.511	ENSGGOG00000026704	-	91	82.323	Gorilla_gorilla
ENSLAFG00000003425	-	100	81.690	ENSGGOG00000003872	-	100	72.857	Gorilla_gorilla
ENSLAFG00000003425	-	89	49.817	ENSHBUG00000013987	smn1	94	50.365	Haplochromis_burtoni
ENSLAFG00000003425	-	96	77.966	ENSHGLG00000001905	-	100	77.966	Heterocephalus_glaber_female
ENSLAFG00000003425	-	96	78.333	ENSHGLG00000001018	-	100	78.333	Heterocephalus_glaber_female
ENSLAFG00000003425	-	96	78.333	ENSHGLG00100011252	-	100	78.333	Heterocephalus_glaber_male
ENSLAFG00000003425	-	92	78.092	ENSHGLG00100018676	-	100	78.092	Heterocephalus_glaber_male
ENSLAFG00000003425	-	99	36.207	ENSHCOG00000017136	smn1	87	45.455	Hippocampus_comes
ENSLAFG00000003425	-	91	52.297	ENSIPUG00000012580	smn1	86	52.482	Ictalurus_punctatus
ENSLAFG00000003425	-	88	87.313	ENSSTOG00000012288	-	100	86.477	Ictidomys_tridecemlineatus
ENSLAFG00000003425	-	65	70.652	ENSJJAG00000014853	-	89	61.798	Jaculus_jaculus
ENSLAFG00000003425	-	89	52.688	ENSKMAG00000007239	smn1	96	48.905	Kryptolebias_marmoratus
ENSLAFG00000003425	-	89	51.429	ENSLBEG00000022550	smn1	94	51.625	Labrus_bergylta
ENSLAFG00000003425	-	99	34.483	ENSLACG00000009808	-	93	36.301	Latimeria_chalumnae
ENSLAFG00000003425	-	100	45.333	ENSLOCG00000011339	smn1	94	50.179	Lepisosteus_oculatus
ENSLAFG00000003425	-	100	81.690	ENSMFAG00000031523	SMN1	99	87.912	Macaca_fascicularis
ENSLAFG00000003425	-	93	80.000	ENSMFAG00000008812	-	99	79.054	Macaca_fascicularis
ENSLAFG00000003425	-	93	79.298	ENSMMUG00000030594	-	99	78.378	Macaca_mulatta
ENSLAFG00000003425	-	100	81.690	ENSMMUG00000020214	SMN1	99	87.912	Macaca_mulatta
ENSLAFG00000003425	-	97	60.000	ENSMNEG00000036423	-	86	70.222	Macaca_nemestrina
ENSLAFG00000003425	-	100	81.690	ENSMNEG00000035094	-	99	87.912	Macaca_nemestrina
ENSLAFG00000003425	-	100	81.690	ENSMLEG00000041902	-	99	86.813	Mandrillus_leucophaeus
ENSLAFG00000003425	-	89	52.500	ENSMAMG00000011034	smn1	94	51.418	Mastacembelus_armatus
ENSLAFG00000003425	-	89	49.259	ENSMZEG00005013634	smn1	94	50.000	Maylandia_zebra
ENSLAFG00000003425	-	99	46.584	ENSMGAG00000008889	-	95	54.500	Meleagris_gallopavo
ENSLAFG00000003425	-	96	79.592	ENSMAUG00000010262	Smn1	100	79.592	Mesocricetus_auratus
ENSLAFG00000003425	-	97	69.799	ENSMICG00000034708	-	100	85.556	Microcebus_murinus
ENSLAFG00000003425	-	96	78.912	ENSMOCG00000017833	Smn1	100	78.912	Microtus_ochrogaster
ENSLAFG00000003425	-	99	41.520	ENSMMOG00000005504	smn1	93	49.462	Mola_mola
ENSLAFG00000003425	-	97	69.728	ENSMODG00000001436	-	99	70.508	Monodelphis_domestica
ENSLAFG00000003425	-	99	38.636	ENSMALG00000008025	smn1	94	50.909	Monopterus_albus
ENSLAFG00000003425	-	96	79.661	MGP_CAROLIEiJ_G0018836	Smn1	100	79.661	Mus_caroli
ENSLAFG00000003425	-	96	79.322	ENSMUSG00000021645	Smn1	100	79.661	Mus_musculus
ENSLAFG00000003425	-	96	78.498	MGP_PahariEiJ_G0015911	Smn1	100	78.840	Mus_pahari
ENSLAFG00000003425	-	96	78.644	MGP_SPRETEiJ_G0019718	Smn1	100	78.983	Mus_spretus
ENSLAFG00000003425	-	91	89.964	ENSMPUG00000014470	-	98	89.964	Mustela_putorius_furo
ENSLAFG00000003425	-	99	82.581	ENSMLUG00000010603	-	97	84.262	Myotis_lucifugus
ENSLAFG00000003425	-	96	81.973	ENSNGAG00000019833	Smn1	100	81.973	Nannospalax_galili
ENSLAFG00000003425	-	89	51.481	ENSNBRG00000023000	smn1	94	52.768	Neolamprologus_brichardi
ENSLAFG00000003425	-	100	80.986	ENSNLEG00000004454	-	99	84.615	Nomascus_leucogenys
ENSLAFG00000003425	-	99	55.152	ENSMEUG00000011393	-	99	66.376	Notamacropus_eugenii
ENSLAFG00000003425	-	83	80.934	ENSOPRG00000002015	-	100	82.101	Ochotona_princeps
ENSLAFG00000003425	-	91	81.362	ENSODEG00000015976	-	97	81.362	Octodon_degus
ENSLAFG00000003425	-	89	51.103	ENSONIG00000011799	smn1	95	52.381	Oreochromis_niloticus
ENSLAFG00000003425	-	95	64.726	ENSOANG00000001626	-	99	65.068	Ornithorhynchus_anatinus
ENSLAFG00000003425	-	97	75.333	ENSOCUG00000025183	-	100	75.333	Oryctolagus_cuniculus
ENSLAFG00000003425	-	97	83.729	ENSOCUG00000017097	-	100	83.729	Oryctolagus_cuniculus
ENSLAFG00000003425	-	96	78.188	ENSOCUG00000026649	-	99	81.208	Oryctolagus_cuniculus
ENSLAFG00000003425	-	53	58.750	ENSORLG00000010552	smn1	94	50.903	Oryzias_latipes
ENSLAFG00000003425	-	99	45.161	ENSORLG00020007936	smn1	94	50.185	Oryzias_latipes_hni
ENSLAFG00000003425	-	53	58.642	ENSORLG00015022425	smn1	94	51.079	Oryzias_latipes_hsok
ENSLAFG00000003425	-	51	58.710	ENSOMEG00000007824	smn1	94	51.087	Oryzias_melastigma
ENSLAFG00000003425	-	100	64.972	ENSOGAG00000031414	-	100	72.355	Otolemur_garnettii
ENSLAFG00000003425	-	91	80.645	ENSOARG00000005425	-	100	80.645	Ovis_aries
ENSLAFG00000003425	-	100	80.986	ENSPPAG00000036640	-	99	85.714	Pan_paniscus
ENSLAFG00000003425	-	100	83.803	ENSPPRG00000005575	-	100	86.735	Panthera_pardus
ENSLAFG00000003425	-	100	83.803	ENSPTIG00000007745	-	100	86.441	Panthera_tigris_altaica
ENSLAFG00000003425	-	100	81.690	ENSPTRG00000016955	-	99	85.714	Pan_troglodytes
ENSLAFG00000003425	-	100	81.690	ENSPANG00000013601	-	99	86.813	Papio_anubis
ENSLAFG00000003425	-	92	80.142	ENSPANG00000000253	-	98	79.522	Papio_anubis
ENSLAFG00000003425	-	99	47.333	ENSPKIG00000011096	smn1	94	51.111	Paramormyrops_kingsleyae
ENSLAFG00000003425	-	99	53.659	ENSPSIG00000014787	-	90	58.188	Pelodiscus_sinensis
ENSLAFG00000003425	-	99	40.252	ENSPMGG00000012285	smn1	94	46.992	Periophthalmus_magnuspinnatus
ENSLAFG00000003425	-	99	32.584	ENSPMAG00000005004	smn1	96	40.625	Petromyzon_marinus
ENSLAFG00000003425	-	94	70.629	ENSPCIG00000025764	-	100	70.990	Phascolarctos_cinereus
ENSLAFG00000003425	-	89	52.500	ENSPFOG00000007786	smn1	94	50.725	Poecilia_formosa
ENSLAFG00000003425	-	99	46.000	ENSPLAG00000012071	smn1	94	51.087	Poecilia_latipinna
ENSLAFG00000003425	-	99	45.333	ENSPMEG00000017085	smn1	94	50.725	Poecilia_mexicana
ENSLAFG00000003425	-	99	46.000	ENSPREG00000005824	smn1	94	51.449	Poecilia_reticulata
ENSLAFG00000003425	-	88	83.026	ENSPPYG00000015533	-	96	83.026	Pongo_abelii
ENSLAFG00000003425	-	100	50.000	ENSPPYG00000019189	-	88	80.769	Pongo_abelii
ENSLAFG00000003425	-	88	87.361	ENSPCAG00000004187	-	100	86.989	Procavia_capensis
ENSLAFG00000003425	-	87	65.799	ENSPCOG00000022307	-	100	67.658	Propithecus_coquereli
ENSLAFG00000003425	-	93	88.028	ENSPVAG00000005977	-	100	86.824	Pteropus_vampyrus
ENSLAFG00000003425	-	89	51.481	ENSPNYG00000014148	smn1	94	52.768	Pundamilia_nyererei
ENSLAFG00000003425	-	89	48.561	ENSPNAG00000014007	smn1	82	49.446	Pygocentrus_nattereri
ENSLAFG00000003425	-	96	79.322	ENSRNOG00000018067	Smn1	100	79.322	Rattus_norvegicus
ENSLAFG00000003425	-	100	80.986	ENSRBIG00000037052	-	99	86.813	Rhinopithecus_bieti
ENSLAFG00000003425	-	100	63.636	ENSRBIG00000036775	-	95	71.277	Rhinopithecus_bieti
ENSLAFG00000003425	-	96	69.388	ENSRROG00000031088	-	99	69.388	Rhinopithecus_roxellana
ENSLAFG00000003425	-	100	80.986	ENSRROG00000039399	-	99	86.813	Rhinopithecus_roxellana
ENSLAFG00000003425	-	81	76.078	ENSSBOG00000020112	-	87	76.471	Saimiri_boliviensis_boliviensis
ENSLAFG00000003425	-	99	80.142	ENSSBOG00000011665	-	99	85.714	Saimiri_boliviensis_boliviensis
ENSLAFG00000003425	-	97	70.408	ENSSHAG00000001499	-	100	69.065	Sarcophilus_harrisii
ENSLAFG00000003425	-	99	44.295	ENSSFOG00015015507	smn1	94	49.640	Scleropages_formosus
ENSLAFG00000003425	-	89	50.554	ENSSMAG00000007922	smn1	94	50.554	Scophthalmus_maximus
ENSLAFG00000003425	-	89	52.128	ENSSDUG00000018533	smn1	94	52.015	Seriola_dumerili
ENSLAFG00000003425	-	89	52.482	ENSSLDG00000021135	smn1	94	52.381	Seriola_lalandi_dorsalis
ENSLAFG00000003425	-	93	62.238	ENSSPUG00000000373	-	96	62.587	Sphenodon_punctatus
ENSLAFG00000003425	-	89	51.786	ENSSPAG00000004345	smn1	94	51.786	Stegastes_partitus
ENSLAFG00000003425	-	93	86.364	ENSSSCG00000016970	-	100	85.522	Sus_scrofa
ENSLAFG00000003425	-	100	51.948	ENSSSCG00000033865	-	95	56.944	Sus_scrofa
ENSLAFG00000003425	-	93	65.493	ENSSSCG00000029127	-	96	64.931	Sus_scrofa
ENSLAFG00000003425	-	91	60.284	ENSTGUG00000001548	-	96	62.222	Taeniopygia_guttata
ENSLAFG00000003425	-	99	38.728	ENSTRUG00000000736	smn	96	46.786	Takifugu_rubripes
ENSLAFG00000003425	-	90	44.521	ENSTNIG00000009892	smn1	95	49.645	Tetraodon_nigroviridis
ENSLAFG00000003425	-	64	84.694	ENSTBEG00000002399	-	92	84.615	Tupaia_belangeri
ENSLAFG00000003425	-	93	84.155	ENSTTRG00000005080	-	100	83.502	Tursiops_truncatus
ENSLAFG00000003425	-	66	88.500	ENSUAMG00000024947	-	71	88.325	Ursus_americanus
ENSLAFG00000003425	-	97	88.889	ENSUMAG00000007842	-	75	88.814	Ursus_maritimus
ENSLAFG00000003425	-	65	100.000	ENSVPAG00000009887	-	100	74.823	Vicugna_pacos
ENSLAFG00000003425	-	96	86.689	ENSVVUG00000006934	-	100	86.689	Vulpes_vulpes
ENSLAFG00000003425	-	88	35.764	ENSXETG00000004912	-	79	61.290	Xenopus_tropicalis
ENSLAFG00000003425	-	96	53.716	ENSXETG00000018189	smn2	98	52.508	Xenopus_tropicalis
ENSLAFG00000003425	-	99	46.000	ENSXMAG00000001521	smn1	95	51.079	Xiphophorus_maculatus