EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLAFG00000003553 (Gene tree)
Gene ID: -
Gene Symbol: PABPC1L
Alias: C20orf119|PABPC1L1|dJ1069P2.3|ePAB
Full Name: poly(A) binding protein cytoplasmic 1 like
Gene Type: protein_coding
Species: Loxodonta_africana
Status: putative
Strand: Plus strand
Length: 32381 bases
Position: chrscaffold_19:44211287-44243667
Accession: 15797
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLAFP00000002964	PABP	PF00658.18	8.1e-28	1	1
ENSLAFP00000002964	RRM_5	PF13893.6	4.9e-09	1	1
ENSLAFP00000002964	RRM_1	PF00076.22	2.1e-87	1	4
ENSLAFP00000002964	RRM_1	PF00076.22	2.1e-87	2	4
ENSLAFP00000002964	RRM_1	PF00076.22	2.1e-87	3	4
ENSLAFP00000002964	RRM_1	PF00076.22	2.1e-87	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLAFT00000003555	PABPC1L-201	1872	-	ENSLAFP00000002964	624 (aa)	-	G3SSM2

Gene Model

Click here to download ENSLAFG00000003553's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLAFG00000003553's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLAFG00000003553	PABPC1L	99	66.134	ENSLAFG00000000151	PABPC4	97	66.134
ENSLAFG00000003553	PABPC1L	57	42.254	ENSLAFG00000012990	MYEF2	61	42.254
ENSLAFG00000003553	PABPC1L	100	49.126	ENSLAFG00000007939	-	97	49.683
ENSLAFG00000003553	PABPC1L	60	34.940	ENSLAFG00000009938	ELAVL2	88	34.940
ENSLAFG00000003553	PABPC1L	52	33.058	ENSLAFG00000003484	CELF1	66	32.117
ENSLAFG00000003553	PABPC1L	59	38.889	ENSLAFG00000005013	ELAVL3	90	33.735
ENSLAFG00000003553	PABPC1L	59	69.898	ENSLAFG00000023096	-	99	69.898
ENSLAFG00000003553	PABPC1L	58	36.508	ENSLAFG00000008531	SF3B4	96	36.508
ENSLAFG00000003553	PABPC1L	60	33.735	ENSLAFG00000001087	ELAVL4	94	31.915
ENSLAFG00000003553	PABPC1L	100	69.683	ENSLAFG00000013994	PABPC1	98	69.683
ENSLAFG00000003553	PABPC1L	53	31.538	ENSLAFG00000013612	CELF2	61	31.538

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLAFG00000003553	PABPC1L	100	84.936	ENSG00000101104	PABPC1L	98	92.901	Homo_sapiens
ENSLAFG00000003553	PABPC1L	99	65.348	ENSAPOG00000010842	pabpc1l	99	65.506	Acanthochromis_polyacanthus
ENSLAFG00000003553	PABPC1L	99	75.730	ENSAMEG00000004099	PABPC1L	100	75.730	Ailuropoda_melanoleuca
ENSLAFG00000003553	PABPC1L	100	66.879	ENSACIG00000021004	-	99	77.215	Amphilophus_citrinellus
ENSLAFG00000003553	PABPC1L	100	65.217	ENSAOCG00000006167	-	99	65.777	Amphiprion_ocellaris
ENSLAFG00000003553	PABPC1L	99	70.337	ENSAPEG00000010558	-	97	80.198	Amphiprion_percula
ENSLAFG00000003553	PABPC1L	100	66.984	ENSATEG00000007428	pabpc1l	99	67.619	Anabas_testudineus
ENSLAFG00000003553	PABPC1L	99	71.885	ENSAPLG00000008415	PABPC1L	99	71.835	Anas_platyrhynchos
ENSLAFG00000003553	PABPC1L	100	74.080	ENSACAG00000011841	PABPC1L	98	74.080	Anolis_carolinensis
ENSLAFG00000003553	PABPC1L	100	83.013	ENSANAG00000026826	PABPC1L	99	83.013	Aotus_nancymaae
ENSLAFG00000003553	PABPC1L	100	66.772	ENSACLG00000024791	pabpc1l	99	66.772	Astatotilapia_calliptera
ENSLAFG00000003553	PABPC1L	100	70.317	ENSAMXG00000013552	pabpc1l	99	70.317	Astyanax_mexicanus
ENSLAFG00000003553	PABPC1L	58	97.619	ENSBTAG00000055300	-	100	97.619	Bos_taurus
ENSLAFG00000003553	PABPC1L	60	82.857	ENSBTAG00000016849	PABPC1L	74	82.857	Bos_taurus
ENSLAFG00000003553	PABPC1L	100	83.494	ENSCJAG00000017628	PABPC1L	99	83.494	Callithrix_jacchus
ENSLAFG00000003553	PABPC1L	59	77.586	ENSCJAG00000038506	-	100	77.586	Callithrix_jacchus
ENSLAFG00000003553	PABPC1L	99	73.853	ENSCAFG00000009573	PABPC1L	100	73.853	Canis_familiaris
ENSLAFG00000003553	PABPC1L	100	84.295	ENSCAFG00020013828	PABPC1L	99	84.295	Canis_lupus_dingo
ENSLAFG00000003553	PABPC1L	99	81.789	ENSCHIG00000025759	PABPC1L	91	81.789	Capra_hircus
ENSLAFG00000003553	PABPC1L	100	82.212	ENSTSYG00000006645	PABPC1L	99	82.212	Carlito_syrichta
ENSLAFG00000003553	PABPC1L	99	77.437	ENSCAPG00000014519	PABPC1L	99	77.437	Cavia_aperea
ENSLAFG00000003553	PABPC1L	100	80.480	ENSCPOG00000013633	PABPC1L	99	80.480	Cavia_porcellus
ENSLAFG00000003553	PABPC1L	100	83.173	ENSCCAG00000023338	PABPC1L	99	83.173	Cebus_capucinus
ENSLAFG00000003553	PABPC1L	100	85.096	ENSCATG00000034065	PABPC1L	99	85.096	Cercocebus_atys
ENSLAFG00000003553	PABPC1L	100	78.880	ENSCLAG00000005298	PABPC1L	99	79.840	Chinchilla_lanigera
ENSLAFG00000003553	PABPC1L	100	85.256	ENSCSAG00000014242	PABPC1L	99	85.256	Chlorocebus_sabaeus
ENSLAFG00000003553	PABPC1L	71	83.258	ENSCPBG00000017755	-	99	83.258	Chrysemys_picta_bellii
ENSLAFG00000003553	PABPC1L	53	80.303	ENSCPBG00000007810	-	83	80.303	Chrysemys_picta_bellii
ENSLAFG00000003553	PABPC1L	97	49.296	ENSCING00000002796	-	97	50.202	Ciona_intestinalis
ENSLAFG00000003553	PABPC1L	99	67.419	ENSCSAVG00000004246	-	96	67.419	Ciona_savignyi
ENSLAFG00000003553	PABPC1L	84	70.213	ENSCSAVG00000003102	-	100	80.822	Ciona_savignyi
ENSLAFG00000003553	PABPC1L	100	81.359	ENSCANG00000037530	PABPC1L	99	81.359	Colobus_angolensis_palliatus
ENSLAFG00000003553	PABPC1L	100	74.400	ENSCGRG00001021938	Pabpc1l	99	74.400	Cricetulus_griseus_chok1gshd
ENSLAFG00000003553	PABPC1L	100	74.400	ENSCGRG00000007946	Pabpc1l	99	74.400	Cricetulus_griseus_crigri
ENSLAFG00000003553	PABPC1L	99	71.754	ENSCSEG00000021295	pabpc1l	99	71.754	Cynoglossus_semilaevis
ENSLAFG00000003553	PABPC1L	100	68.160	ENSCVAG00000015943	-	86	85.496	Cyprinodon_variegatus
ENSLAFG00000003553	PABPC1L	100	70.206	ENSDARG00000002597	pabpc1l	88	87.692	Danio_rerio
ENSLAFG00000003553	PABPC1L	100	86.560	ENSDNOG00000048450	PABPC1L	99	86.560	Dasypus_novemcinctus
ENSLAFG00000003553	PABPC1L	100	81.571	ENSDORG00000001067	Pabpc1l	99	81.571	Dipodomys_ordii
ENSLAFG00000003553	PABPC1L	95	91.057	ENSETEG00000009969	PABPC1L	72	91.057	Echinops_telfairi
ENSLAFG00000003553	PABPC1L	52	89.091	ENSEASG00005023407	-	67	89.091	Equus_asinus_asinus
ENSLAFG00000003553	PABPC1L	58	95.833	ENSEASG00005023408	-	100	95.833	Equus_asinus_asinus
ENSLAFG00000003553	PABPC1L	67	85.532	ENSECAG00000040139	-	83	85.532	Equus_caballus
ENSLAFG00000003553	PABPC1L	100	79.487	ENSEEUG00000005978	PABPC1L	99	79.487	Erinaceus_europaeus
ENSLAFG00000003553	PABPC1L	100	68.927	ENSELUG00000001811	pabpc1l	99	68.927	Esox_lucius
ENSLAFG00000003553	PABPC1L	100	84.455	ENSFCAG00000011692	PABPC1L	99	84.455	Felis_catus
ENSLAFG00000003553	PABPC1L	84	76.360	ENSFALG00000005372	PABPC1L	88	76.360	Ficedula_albicollis
ENSLAFG00000003553	PABPC1L	100	79.040	ENSFDAG00000008291	PABPC1L	99	79.040	Fukomys_damarensis
ENSLAFG00000003553	PABPC1L	100	67.937	ENSFHEG00000003398	pabpc1l	99	67.937	Fundulus_heteroclitus
ENSLAFG00000003553	PABPC1L	100	68.590	ENSGMOG00000004437	pabpc1l	98	68.590	Gadus_morhua
ENSLAFG00000003553	PABPC1L	99	79.770	ENSGALG00000004123	PABPC1L	98	84.746	Gallus_gallus
ENSLAFG00000003553	PABPC1L	100	63.664	ENSGAFG00000021057	pabpc1l	99	63.664	Gambusia_affinis
ENSLAFG00000003553	PABPC1L	100	66.667	ENSGACG00000002792	pabpc1l	99	66.667	Gasterosteus_aculeatus
ENSLAFG00000003553	PABPC1L	100	76.592	ENSGAGG00000000589	PABPC1L	98	76.592	Gopherus_agassizii
ENSLAFG00000003553	PABPC1L	100	84.936	ENSGGOG00000004584	PABPC1L	99	84.936	Gorilla_gorilla
ENSLAFG00000003553	PABPC1L	100	66.614	ENSHBUG00000006134	pabpc1l	99	66.614	Haplochromis_burtoni
ENSLAFG00000003553	PABPC1L	100	80.990	ENSHGLG00000008434	PABPC1L	99	80.990	Heterocephalus_glaber_female
ENSLAFG00000003553	PABPC1L	58	82.022	ENSHGLG00100019506	-	100	82.022	Heterocephalus_glaber_male
ENSLAFG00000003553	PABPC1L	100	80.990	ENSHGLG00100012151	PABPC1L	99	80.990	Heterocephalus_glaber_male
ENSLAFG00000003553	PABPC1L	99	65.385	ENSHCOG00000009270	pabpc1l	99	66.121	Hippocampus_comes
ENSLAFG00000003553	PABPC1L	52	62.308	ENSIPUG00000005537	-	100	62.308	Ictalurus_punctatus
ENSLAFG00000003553	PABPC1L	59	59.884	ENSIPUG00000006780	-	85	59.884	Ictalurus_punctatus
ENSLAFG00000003553	PABPC1L	100	70.794	ENSIPUG00000012602	pabpc1l	99	70.794	Ictalurus_punctatus
ENSLAFG00000003553	PABPC1L	58	59.302	ENSIPUG00000006760	-	88	59.302	Ictalurus_punctatus
ENSLAFG00000003553	PABPC1L	100	82.907	ENSSTOG00000003739	PABPC1L	99	82.907	Ictidomys_tridecemlineatus
ENSLAFG00000003553	PABPC1L	99	68.280	ENSJJAG00000022406	Pabpc1l	99	64.904	Jaculus_jaculus
ENSLAFG00000003553	PABPC1L	100	67.200	ENSKMAG00000016847	pabpc1l	99	67.200	Kryptolebias_marmoratus
ENSLAFG00000003553	PABPC1L	100	66.509	ENSLBEG00000010084	pabpc1l	99	66.509	Labrus_bergylta
ENSLAFG00000003553	PABPC1L	100	70.487	ENSLACG00000005762	PABPC1L	97	73.321	Latimeria_chalumnae
ENSLAFG00000003553	PABPC1L	100	71.132	ENSLOCG00000007519	pabpc1l	98	71.132	Lepisosteus_oculatus
ENSLAFG00000003553	PABPC1L	100	85.096	ENSMFAG00000040365	PABPC1L	99	85.096	Macaca_fascicularis
ENSLAFG00000003553	PABPC1L	100	83.974	ENSMNEG00000032298	PABPC1L	99	83.974	Macaca_nemestrina
ENSLAFG00000003553	PABPC1L	100	85.096	ENSMLEG00000043139	PABPC1L	99	85.096	Mandrillus_leucophaeus
ENSLAFG00000003553	PABPC1L	98	65.700	ENSMAMG00000011854	pabpc1l	97	65.700	Mastacembelus_armatus
ENSLAFG00000003553	PABPC1L	100	66.772	ENSMZEG00005023713	pabpc1l	99	66.772	Maylandia_zebra
ENSLAFG00000003553	PABPC1L	100	74.441	ENSMGAG00000003674	PABPC1L	98	74.441	Meleagris_gallopavo
ENSLAFG00000003553	PABPC1L	100	73.280	ENSMOCG00000013186	Pabpc1l	99	73.280	Microtus_ochrogaster
ENSLAFG00000003553	PABPC1L	100	66.773	ENSMMOG00000020574	-	90	86.154	Mola_mola
ENSLAFG00000003553	PABPC1L	95	75.874	ENSMODG00000016198	PABPC1L	99	75.890	Monodelphis_domestica
ENSLAFG00000003553	PABPC1L	98	65.217	ENSMALG00000021622	pabpc1l	100	65.217	Monopterus_albus
ENSLAFG00000003553	PABPC1L	100	74.199	MGP_CAROLIEiJ_G0024627	Pabpc1l	99	74.199	Mus_caroli
ENSLAFG00000003553	PABPC1L	100	73.878	ENSMUSG00000054582	Pabpc1l	99	73.878	Mus_musculus
ENSLAFG00000003553	PABPC1L	100	74.560	MGP_PahariEiJ_G0026071	Pabpc1l	99	74.560	Mus_pahari
ENSLAFG00000003553	PABPC1L	100	74.038	MGP_SPRETEiJ_G0025549	Pabpc1l	99	74.038	Mus_spretus
ENSLAFG00000003553	PABPC1L	100	83.974	ENSMPUG00000017646	PABPC1L	99	83.974	Mustela_putorius_furo
ENSLAFG00000003553	PABPC1L	99	78.205	ENSMLUG00000006324	PABPC1L	97	78.205	Myotis_lucifugus
ENSLAFG00000003553	PABPC1L	100	77.671	ENSNGAG00000010458	Pabpc1l	99	77.671	Nannospalax_galili
ENSLAFG00000003553	PABPC1L	100	67.305	ENSNBRG00000016633	pabpc1l	99	77.215	Neolamprologus_brichardi
ENSLAFG00000003553	PABPC1L	100	66.026	ENSMEUG00000007905	-	99	66.026	Notamacropus_eugenii
ENSLAFG00000003553	PABPC1L	100	81.891	ENSOPRG00000011846	PABPC1L	99	81.891	Ochotona_princeps
ENSLAFG00000003553	PABPC1L	100	71.680	ENSODEG00000015482	PABPC1L	99	71.680	Octodon_degus
ENSLAFG00000003553	PABPC1L	57	76.250	ENSODEG00000002920	-	97	76.250	Octodon_degus
ENSLAFG00000003553	PABPC1L	100	66.930	ENSONIG00000017314	pabpc1l	99	66.930	Oreochromis_niloticus
ENSLAFG00000003553	PABPC1L	91	65.905	ENSOANG00000015793	-	100	65.905	Ornithorhynchus_anatinus
ENSLAFG00000003553	PABPC1L	100	75.994	ENSOCUG00000003005	PABPC1L	99	75.994	Oryctolagus_cuniculus
ENSLAFG00000003553	PABPC1L	99	71.628	ENSORLG00000010322	pabpc1l	99	71.628	Oryzias_latipes
ENSLAFG00000003553	PABPC1L	99	71.628	ENSORLG00020021193	pabpc1l	99	71.628	Oryzias_latipes_hni
ENSLAFG00000003553	PABPC1L	99	71.628	ENSORLG00015017018	pabpc1l	99	71.628	Oryzias_latipes_hsok
ENSLAFG00000003553	PABPC1L	100	63.952	ENSOMEG00000010789	pabpc1l	99	63.952	Oryzias_melastigma
ENSLAFG00000003553	PABPC1L	100	81.962	ENSOGAG00000032999	PABPC1L	99	81.962	Otolemur_garnettii
ENSLAFG00000003553	PABPC1L	100	82.532	ENSOARG00000004578	PABPC1L	99	82.532	Ovis_aries
ENSLAFG00000003553	PABPC1L	100	84.776	ENSPPAG00000039677	PABPC1L	99	84.776	Pan_paniscus
ENSLAFG00000003553	PABPC1L	62	81.481	ENSPPRG00000019327	-	98	81.481	Panthera_pardus
ENSLAFG00000003553	PABPC1L	99	84.304	ENSPTIG00000006524	PABPC1L	99	84.304	Panthera_tigris_altaica
ENSLAFG00000003553	PABPC1L	62	92.593	ENSPTRG00000013531	PABPC1L	98	92.593	Pan_troglodytes
ENSLAFG00000003553	PABPC1L	100	85.096	ENSPANG00000018788	PABPC1L	99	85.096	Papio_anubis
ENSLAFG00000003553	PABPC1L	52	82.443	ENSPKIG00000016810	-	93	82.443	Paramormyrops_kingsleyae
ENSLAFG00000003553	PABPC1L	100	70.541	ENSPKIG00000007322	pabpc1l	99	70.541	Paramormyrops_kingsleyae
ENSLAFG00000003553	PABPC1L	67	84.173	ENSPSIG00000013289	PABPC1L	99	84.173	Pelodiscus_sinensis
ENSLAFG00000003553	PABPC1L	62	84.848	ENSPMGG00000023117	pabpc1l	92	84.848	Periophthalmus_magnuspinnatus
ENSLAFG00000003553	PABPC1L	56	71.134	ENSPMGG00000023121	-	90	71.134	Periophthalmus_magnuspinnatus
ENSLAFG00000003553	PABPC1L	100	73.878	ENSPEMG00000020671	Pabpc1l	99	73.878	Peromyscus_maniculatus_bairdii
ENSLAFG00000003553	PABPC1L	100	67.520	ENSPFOG00000013241	pabpc1l	99	66.983	Poecilia_formosa
ENSLAFG00000003553	PABPC1L	100	66.983	ENSPLAG00000017490	-	99	66.983	Poecilia_latipinna
ENSLAFG00000003553	PABPC1L	52	86.923	ENSPLAG00000023686	-	92	86.923	Poecilia_latipinna
ENSLAFG00000003553	PABPC1L	100	67.143	ENSPMEG00000007677	pabpc1l	99	67.143	Poecilia_mexicana
ENSLAFG00000003553	PABPC1L	52	86.923	ENSPMEG00000009185	-	88	86.923	Poecilia_mexicana
ENSLAFG00000003553	PABPC1L	66	76.271	ENSPREG00000015886	pabpc1l	99	76.271	Poecilia_reticulata
ENSLAFG00000003553	PABPC1L	100	84.936	ENSPPYG00000011042	PABPC1L	99	84.936	Pongo_abelii
ENSLAFG00000003553	PABPC1L	61	100.000	ENSPCAG00000011787	-	75	100.000	Procavia_capensis
ENSLAFG00000003553	PABPC1L	100	83.173	ENSPCOG00000020630	PABPC1L	99	83.173	Propithecus_coquereli
ENSLAFG00000003553	PABPC1L	100	82.080	ENSPVAG00000012663	PABPC1L	99	82.080	Pteropus_vampyrus
ENSLAFG00000003553	PABPC1L	100	65.224	ENSPNYG00000004101	pabpc1l	99	77.215	Pundamilia_nyererei
ENSLAFG00000003553	PABPC1L	100	63.752	ENSPNAG00000021248	pabpc1l	99	63.752	Pygocentrus_nattereri
ENSLAFG00000003553	PABPC1L	100	74.519	ENSRNOG00000012750	Pabpc1l	99	74.519	Rattus_norvegicus
ENSLAFG00000003553	PABPC1L	100	84.776	ENSRBIG00000035381	PABPC1L	99	84.776	Rhinopithecus_bieti
ENSLAFG00000003553	PABPC1L	100	84.455	ENSRROG00000044498	PABPC1L	99	84.455	Rhinopithecus_roxellana
ENSLAFG00000003553	PABPC1L	100	82.853	ENSSBOG00000009532	-	99	82.853	Saimiri_boliviensis_boliviensis
ENSLAFG00000003553	PABPC1L	99	71.687	ENSSHAG00000011446	PABPC1L	100	71.687	Sarcophilus_harrisii
ENSLAFG00000003553	PABPC1L	100	72.045	ENSSFOG00015017304	pabpc1l	99	72.045	Scleropages_formosus
ENSLAFG00000003553	PABPC1L	100	66.614	ENSSMAG00000010516	pabpc1l	98	86.047	Scophthalmus_maximus
ENSLAFG00000003553	PABPC1L	100	66.301	ENSSDUG00000014743	pabpc1l	99	66.301	Seriola_dumerili
ENSLAFG00000003553	PABPC1L	99	72.917	ENSSLDG00000006981	pabpc1l	95	79.904	Seriola_lalandi_dorsalis
ENSLAFG00000003553	PABPC1L	100	73.684	ENSSPUG00000004233	PABPC1L	98	73.684	Sphenodon_punctatus
ENSLAFG00000003553	PABPC1L	87	77.922	ENSSPAG00000017137	pabpc1l	99	77.922	Stegastes_partitus
ENSLAFG00000003553	PABPC1L	100	82.051	ENSSSCG00000007382	PABPC1L	99	82.051	Sus_scrofa
ENSLAFG00000003553	PABPC1L	100	73.742	ENSTGUG00000005114	PABPC1L	99	73.742	Taeniopygia_guttata
ENSLAFG00000003553	PABPC1L	98	66.721	ENSTRUG00000011085	pabpc1l	97	66.721	Takifugu_rubripes
ENSLAFG00000003553	PABPC1L	100	63.836	ENSTNIG00000017903	pabpc1l	98	63.836	Tetraodon_nigroviridis
ENSLAFG00000003553	PABPC1L	94	93.836	ENSTBEG00000002851	PABPC1L	79	93.836	Tupaia_belangeri
ENSLAFG00000003553	PABPC1L	95	81.818	ENSTTRG00000007618	PABPC1L	100	81.967	Tursiops_truncatus
ENSLAFG00000003553	PABPC1L	100	82.212	ENSUAMG00000017682	PABPC1L	99	82.212	Ursus_americanus
ENSLAFG00000003553	PABPC1L	66	89.973	ENSUMAG00000025436	PABPC1L	94	89.973	Ursus_maritimus
ENSLAFG00000003553	PABPC1L	99	93.676	ENSVVUG00000018939	PABPC1L	98	93.676	Vulpes_vulpes
ENSLAFG00000003553	PABPC1L	100	68.800	ENSXETG00000022831	pabpc1l	98	68.800	Xenopus_tropicalis
ENSLAFG00000003553	PABPC1L	99	71.724	ENSXCOG00000005459	pabpc1l	99	82.270	Xiphophorus_couchianus
ENSLAFG00000003553	PABPC1L	100	67.035	ENSXMAG00000017135	pabpc1l	99	67.035	Xiphophorus_maculatus