EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLAFG00000003664 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: ribonucleoprotein%2C PTB binding 1
Gene Type: protein_coding
Species: Loxodonta_africana
Status: putative
Strand: Plus strand
Length: 12848 bases
Position: chrscaffold_26:33347779-33360626
Accession: 100662491
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLAFP00000019199	RRM_1	PF00076.22	3.2e-28	1	2
ENSLAFP00000019199	RRM_1	PF00076.22	3.2e-28	2	2
ENSLAFP00000003058	RRM_1	PF00076.22	5.6e-28	1	2
ENSLAFP00000003058	RRM_1	PF00076.22	5.6e-28	2	2
ENSLAFP00000028468	RRM_1	PF00076.22	5.8e-28	1	2
ENSLAFP00000028468	RRM_1	PF00076.22	5.8e-28	2	2
ENSLAFP00000027997	RRM_1	PF00076.22	5.8e-28	1	2
ENSLAFP00000027997	RRM_1	PF00076.22	5.8e-28	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLAFT00000034127	-	1968	-	ENSLAFP00000019199	655 (aa)	-	G3TUE1
ENSLAFT00000028091	-	2232	-	ENSLAFP00000027997	743 (aa)	-	G3UJI8
ENSLAFT00000003666	-	2214	XM_003413094	ENSLAFP00000003058	737 (aa)	XP_003413142	G3SSU9
ENSLAFT00000028767	-	2232	-	ENSLAFP00000028468	743 (aa)	-	G3UKV9

Gene Model

Click here to download ENSLAFG00000003664's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLAFG00000003664's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLAFG00000003664	-	92	44.481	ENSLAFG00000012508	RAVER2	100	44.318

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLAFG00000003664	-	100	92.059	ENSG00000161847	RAVER1	100	91.790	Homo_sapiens
ENSLAFG00000003664	-	100	90.970	ENSAMEG00000011738	RAVER1	98	90.431	Ailuropoda_melanoleuca
ENSLAFG00000003664	-	84	53.358	ENSAOCG00000005128	raver1	79	56.923	Amphiprion_ocellaris
ENSLAFG00000003664	-	76	75.439	ENSAPEG00000010854	raver1	83	75.439	Amphiprion_percula
ENSLAFG00000003664	-	91	75.439	ENSATEG00000021004	raver1	74	75.439	Anabas_testudineus
ENSLAFG00000003664	-	87	58.692	ENSACAG00000008386	-	91	58.832	Anolis_carolinensis
ENSLAFG00000003664	-	100	90.040	ENSANAG00000028226	RAVER1	98	90.040	Aotus_nancymaae
ENSLAFG00000003664	-	82	52.865	ENSACLG00000018492	raver1	68	54.428	Astatotilapia_calliptera
ENSLAFG00000003664	-	99	50.738	ENSAMXG00000005132	raver1	95	49.211	Astyanax_mexicanus
ENSLAFG00000003664	-	97	93.750	ENSBTAG00000015721	RAVER1	97	95.238	Bos_taurus
ENSLAFG00000003664	-	100	90.310	ENSCJAG00000005671	RAVER1	98	90.310	Callithrix_jacchus
ENSLAFG00000003664	-	96	95.000	ENSCAFG00000017861	RAVER1	98	90.296	Canis_familiaris
ENSLAFG00000003664	-	96	95.000	ENSCAFG00020024449	RAVER1	100	90.296	Canis_lupus_dingo
ENSLAFG00000003664	-	100	89.218	ENSCHIG00000006718	RAVER1	100	89.757	Capra_hircus
ENSLAFG00000003664	-	92	82.006	ENSTSYG00000027107	RAVER1	91	93.674	Carlito_syrichta
ENSLAFG00000003664	-	91	93.750	ENSCAPG00000002269	RAVER1	100	87.294	Cavia_aperea
ENSLAFG00000003664	-	100	88.949	ENSCPOG00000001008	RAVER1	100	88.275	Cavia_porcellus
ENSLAFG00000003664	-	100	90.713	ENSCCAG00000031723	RAVER1	98	90.175	Cebus_capucinus
ENSLAFG00000003664	-	100	91.655	ENSCATG00000043863	RAVER1	98	91.252	Cercocebus_atys
ENSLAFG00000003664	-	100	90.836	ENSCLAG00000009336	RAVER1	100	90.701	Chinchilla_lanigera
ENSLAFG00000003664	-	100	91.655	ENSCSAG00000007317	RAVER1	84	91.252	Chlorocebus_sabaeus
ENSLAFG00000003664	-	98	71.250	ENSCPBG00000005349	-	96	61.806	Chrysemys_picta_bellii
ENSLAFG00000003664	-	100	91.790	ENSCANG00000008337	RAVER1	98	91.386	Colobus_angolensis_palliatus
ENSLAFG00000003664	-	100	88.964	ENSCGRG00001013260	-	100	88.694	Cricetulus_griseus_chok1gshd
ENSLAFG00000003664	-	100	88.964	ENSCGRG00000015138	-	100	88.694	Cricetulus_griseus_crigri
ENSLAFG00000003664	-	89	78.846	ENSCSEG00000021092	raver1	78	78.846	Cynoglossus_semilaevis
ENSLAFG00000003664	-	98	56.522	ENSCVAG00000013971	raver1	92	51.754	Cyprinodon_variegatus
ENSLAFG00000003664	-	95	62.500	ENSDARG00000052617	raver1	74	86.000	Danio_rerio
ENSLAFG00000003664	-	66	89.865	ENSDNOG00000035742	-	61	66.102	Dasypus_novemcinctus
ENSLAFG00000003664	-	100	81.423	ENSDORG00000010106	-	100	81.818	Dipodomys_ordii
ENSLAFG00000003664	-	67	75.000	ENSETEG00000008201	-	76	88.442	Echinops_telfairi
ENSLAFG00000003664	-	65	95.274	ENSEASG00005010544	-	88	95.274	Equus_asinus_asinus
ENSLAFG00000003664	-	100	92.183	ENSECAG00000024966	RAVER1	98	92.318	Equus_caballus
ENSLAFG00000003664	-	91	82.000	ENSELUG00000023287	raver1	75	82.000	Esox_lucius
ENSLAFG00000003664	-	100	92.857	ENSFCAG00000009435	RAVER1	98	92.318	Felis_catus
ENSLAFG00000003664	-	100	89.744	ENSFDAG00000015113	RAVER1	100	90.566	Fukomys_damarensis
ENSLAFG00000003664	-	84	59.843	ENSGMOG00000003649	raver1	86	59.646	Gadus_morhua
ENSLAFG00000003664	-	69	88.889	ENSGALG00000050608	-	53	46.169	Gallus_gallus
ENSLAFG00000003664	-	92	73.333	ENSGAFG00000015944	raver1	94	50.854	Gambusia_affinis
ENSLAFG00000003664	-	53	68.750	ENSGACG00000013818	raver1	99	50.066	Gasterosteus_aculeatus
ENSLAFG00000003664	-	98	74.390	ENSGAGG00000011748	-	96	76.882	Gopherus_agassizii
ENSLAFG00000003664	-	100	91.790	ENSGGOG00000006015	RAVER1	98	91.521	Gorilla_gorilla
ENSLAFG00000003664	-	82	52.865	ENSHBUG00000021210	raver1	86	52.671	Haplochromis_burtoni
ENSLAFG00000003664	-	95	95.000	ENSHGLG00000015460	RAVER1	100	90.676	Heterocephalus_glaber_female
ENSLAFG00000003664	-	95	95.000	ENSHGLG00100000812	RAVER1	100	90.676	Heterocephalus_glaber_male
ENSLAFG00000003664	-	78	62.963	ENSHCOG00000000449	raver1	89	51.296	Hippocampus_comes
ENSLAFG00000003664	-	99	52.827	ENSIPUG00000013153	raver1	91	52.915	Ictalurus_punctatus
ENSLAFG00000003664	-	97	95.000	ENSSTOG00000003241	RAVER1	100	91.263	Ictidomys_tridecemlineatus
ENSLAFG00000003664	-	100	90.591	ENSJJAG00000018219	-	100	90.591	Jaculus_jaculus
ENSLAFG00000003664	-	99	51.884	ENSKMAG00000017355	raver1	73	76.364	Kryptolebias_marmoratus
ENSLAFG00000003664	-	83	52.277	ENSLBEG00000008268	raver1	70	58.103	Labrus_bergylta
ENSLAFG00000003664	-	89	72.500	ENSLACG00000005809	-	99	61.373	Latimeria_chalumnae
ENSLAFG00000003664	-	100	55.986	ENSLOCG00000007500	raver1	94	54.040	Lepisosteus_oculatus
ENSLAFG00000003664	-	100	91.386	ENSMFAG00000037977	RAVER1	98	90.983	Macaca_fascicularis
ENSLAFG00000003664	-	100	91.386	ENSMMUG00000014897	RAVER1	98	90.983	Macaca_mulatta
ENSLAFG00000003664	-	100	91.386	ENSMNEG00000028390	RAVER1	98	90.983	Macaca_nemestrina
ENSLAFG00000003664	-	100	91.655	ENSMLEG00000041959	RAVER1	98	91.252	Mandrillus_leucophaeus
ENSLAFG00000003664	-	92	77.193	ENSMAMG00000012059	raver1	81	77.358	Mastacembelus_armatus
ENSLAFG00000003664	-	82	52.865	ENSMZEG00005019002	raver1	94	50.467	Maylandia_zebra
ENSLAFG00000003664	-	100	88.322	ENSMAUG00000017948	-	100	88.188	Mesocricetus_auratus
ENSLAFG00000003664	-	96	94.937	ENSMICG00000010326	RAVER1	99	89.879	Microcebus_murinus
ENSLAFG00000003664	-	100	89.367	ENSMOCG00000015553	-	100	89.098	Microtus_ochrogaster
ENSLAFG00000003664	-	99	51.379	ENSMMOG00000012093	raver1	73	77.193	Mola_mola
ENSLAFG00000003664	-	97	76.381	ENSMODG00000005584	-	89	75.967	Monodelphis_domestica
ENSLAFG00000003664	-	90	82.000	ENSMALG00000016569	raver1	73	82.000	Monopterus_albus
ENSLAFG00000003664	-	100	88.117	MGP_CAROLIEiJ_G0031860	-	100	87.850	Mus_caroli
ENSLAFG00000003664	-	100	88.385	ENSMUSG00000010205	Raver1	100	88.117	Mus_musculus
ENSLAFG00000003664	-	100	86.853	MGP_PahariEiJ_G0014726	-	100	87.384	Mus_pahari
ENSLAFG00000003664	-	100	88.251	MGP_SPRETEiJ_G0032984	-	100	87.984	Mus_spretus
ENSLAFG00000003664	-	100	91.509	ENSMPUG00000006712	RAVER1	98	91.914	Mustela_putorius_furo
ENSLAFG00000003664	-	97	95.000	ENSMLUG00000012328	RAVER1	100	90.296	Myotis_lucifugus
ENSLAFG00000003664	-	96	92.500	ENSNGAG00000001260	-	100	87.887	Nannospalax_galili
ENSLAFG00000003664	-	79	63.750	ENSNBRG00000010139	raver1	93	44.828	Neolamprologus_brichardi
ENSLAFG00000003664	-	100	91.790	ENSNLEG00000012181	RAVER1	98	91.386	Nomascus_leucogenys
ENSLAFG00000003664	-	88	80.000	ENSMEUG00000003281	-	100	74.036	Notamacropus_eugenii
ENSLAFG00000003664	-	50	86.719	ENSOPRG00000005855	-	51	87.500	Ochotona_princeps
ENSLAFG00000003664	-	100	90.431	ENSODEG00000016260	RAVER1	100	90.836	Octodon_degus
ENSLAFG00000003664	-	91	77.193	ENSONIG00000001559	raver1	79	77.193	Oreochromis_niloticus
ENSLAFG00000003664	-	97	95.000	ENSOCUG00000020918	RAVER1	98	83.941	Oryctolagus_cuniculus
ENSLAFG00000003664	-	66	69.602	ENSORLG00000005458	raver1	92	45.913	Oryzias_latipes
ENSLAFG00000003664	-	66	69.602	ENSORLG00020004392	raver1	57	83.673	Oryzias_latipes_hni
ENSLAFG00000003664	-	66	69.318	ENSORLG00015017222	raver1	57	83.673	Oryzias_latipes_hsok
ENSLAFG00000003664	-	99	48.854	ENSOMEG00000023956	raver1	69	81.633	Oryzias_melastigma
ENSLAFG00000003664	-	100	90.566	ENSOGAG00000011071	RAVER1	98	90.431	Otolemur_garnettii
ENSLAFG00000003664	-	100	89.310	ENSOARG00000015886	RAVER1	98	88.769	Ovis_aries
ENSLAFG00000003664	-	100	92.059	ENSPPAG00000002611	RAVER1	98	91.790	Pan_paniscus
ENSLAFG00000003664	-	100	93.261	ENSPPRG00000009912	RAVER1	98	92.722	Panthera_pardus
ENSLAFG00000003664	-	100	92.059	ENSPTRG00000010466	RAVER1	98	91.790	Pan_troglodytes
ENSLAFG00000003664	-	100	91.521	ENSPANG00000004122	RAVER1	98	91.117	Papio_anubis
ENSLAFG00000003664	-	100	89.113	ENSPEMG00000016411	-	100	89.247	Peromyscus_maniculatus_bairdii
ENSLAFG00000003664	-	100	77.778	ENSPCIG00000018695	-	99	81.391	Phascolarctos_cinereus
ENSLAFG00000003664	-	96	60.000	ENSPFOG00000007016	raver1	77	58.824	Poecilia_formosa
ENSLAFG00000003664	-	61	80.000	ENSPLAG00000020793	raver1	81	56.705	Poecilia_latipinna
ENSLAFG00000003664	-	100	51.780	ENSPMEG00000011220	raver1	91	52.687	Poecilia_mexicana
ENSLAFG00000003664	-	73	88.372	ENSPREG00000006864	raver1	78	88.372	Poecilia_reticulata
ENSLAFG00000003664	-	100	90.579	ENSPPYG00000010514	RAVER1	84	90.848	Pongo_abelii
ENSLAFG00000003664	-	100	91.790	ENSPCOG00000026605	RAVER1	98	91.521	Propithecus_coquereli
ENSLAFG00000003664	-	100	91.903	ENSPVAG00000003689	RAVER1	100	92.173	Pteropus_vampyrus
ENSLAFG00000003664	-	63	82.353	ENSPNYG00000013284	raver1	66	82.353	Pundamilia_nyererei
ENSLAFG00000003664	-	100	51.136	ENSPNAG00000015476	raver1	93	50.670	Pygocentrus_nattereri
ENSLAFG00000003664	-	100	87.717	ENSRNOG00000020710	Raver1	100	87.984	Rattus_norvegicus
ENSLAFG00000003664	-	97	96.250	ENSRBIG00000034702	RAVER1	98	91.655	Rhinopithecus_bieti
ENSLAFG00000003664	-	99	96.250	ENSRROG00000031186	RAVER1	98	88.694	Rhinopithecus_roxellana
ENSLAFG00000003664	-	100	87.618	ENSSBOG00000023423	RAVER1	98	87.483	Saimiri_boliviensis_boliviensis
ENSLAFG00000003664	-	88	81.250	ENSSHAG00000008181	-	90	75.628	Sarcophilus_harrisii
ENSLAFG00000003664	-	84	53.345	ENSSMAG00000004546	raver1	66	53.333	Scophthalmus_maximus
ENSLAFG00000003664	-	99	51.429	ENSSDUG00000021063	raver1	92	51.714	Seriola_dumerili
ENSLAFG00000003664	-	80	60.714	ENSSLDG00000014505	raver1	85	57.553	Seriola_lalandi_dorsalis
ENSLAFG00000003664	-	80	60.714	ENSSPAG00000000688	raver1	93	49.288	Stegastes_partitus
ENSLAFG00000003664	-	100	92.992	ENSSSCG00000013650	-	98	92.992	Sus_scrofa
ENSLAFG00000003664	-	99	50.268	ENSTRUG00000025641	raver1	72	85.714	Takifugu_rubripes
ENSLAFG00000003664	-	97	95.000	ENSTTRG00000009552	RAVER1	100	91.375	Tursiops_truncatus
ENSLAFG00000003664	-	100	93.127	ENSUAMG00000020385	RAVER1	98	92.588	Ursus_americanus
ENSLAFG00000003664	-	96	95.000	ENSVVUG00000028976	RAVER1	98	90.566	Vulpes_vulpes
ENSLAFG00000003664	-	100	54.928	ENSXETG00000011622	raver1	100	54.843	Xenopus_tropicalis
ENSLAFG00000003664	-	95	60.000	ENSXCOG00000016368	raver1	94	50.200	Xiphophorus_couchianus
ENSLAFG00000003664	-	95	60.000	ENSXMAG00000000217	raver1	84	58.153	Xiphophorus_maculatus