EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLAFG00000004115 (Gene tree)
Gene ID: -
Gene Symbol: PTCD2
Alias: FLJ12598
Full Name: pentatricopeptide repeat domain 2
Gene Type: protein_coding
Species: Loxodonta_africana
Status: putative
Strand: Plus strand
Length: 27245 bases
Position: chrscaffold_7:74502234-74529478
Accession: 25734
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLAFP00000003432	MRP-S27	PF10037.9	2.5e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLAFT00000004115	PTCD2-201	933	-	ENSLAFP00000003432	311 (aa)	-	G3STN4

Gene Model

Click here to download ENSLAFG00000004115's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLAFG00000004115's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLAFG00000004115	PTCD2	100	77.814	ENSG00000049883	PTCD2	95	73.856	Homo_sapiens
ENSLAFG00000004115	PTCD2	93	50.865	ENSAPOG00000020682	ptcd2	72	52.000	Acanthochromis_polyacanthus
ENSLAFG00000004115	PTCD2	100	79.743	ENSAMEG00000007194	PTCD2	80	79.743	Ailuropoda_melanoleuca
ENSLAFG00000004115	PTCD2	87	46.350	ENSACIG00000002053	ptcd2	81	46.350	Amphilophus_citrinellus
ENSLAFG00000004115	PTCD2	93	50.173	ENSAOCG00000006616	ptcd2	71	51.273	Amphiprion_ocellaris
ENSLAFG00000004115	PTCD2	93	50.519	ENSAPEG00000022926	ptcd2	71	51.636	Amphiprion_percula
ENSLAFG00000004115	PTCD2	94	59.589	ENSACAG00000009747	PTCD2	71	61.011	Anolis_carolinensis
ENSLAFG00000004115	PTCD2	100	80.064	ENSANAG00000029353	PTCD2	80	80.064	Aotus_nancymaae
ENSLAFG00000004115	PTCD2	88	50.182	ENSACLG00000027742	ptcd2	71	50.182	Astatotilapia_calliptera
ENSLAFG00000004115	PTCD2	91	48.227	ENSAMXG00000029404	ptcd2	73	48.540	Astyanax_mexicanus
ENSLAFG00000004115	PTCD2	99	80.064	ENSBTAG00000014675	PTCD2	81	80.064	Bos_taurus
ENSLAFG00000004115	PTCD2	100	80.064	ENSCJAG00000016364	PTCD2	80	80.064	Callithrix_jacchus
ENSLAFG00000004115	PTCD2	100	76.527	ENSCAFG00000007982	PTCD2	73	76.527	Canis_familiaris
ENSLAFG00000004115	PTCD2	88	79.562	ENSCAFG00020019147	PTCD2	77	79.562	Canis_lupus_dingo
ENSLAFG00000004115	PTCD2	99	80.707	ENSCHIG00000017118	PTCD2	81	80.707	Capra_hircus
ENSLAFG00000004115	PTCD2	100	73.955	ENSCPOG00000040168	PTCD2	81	73.955	Cavia_porcellus
ENSLAFG00000004115	PTCD2	100	79.100	ENSCCAG00000029389	-	80	79.100	Cebus_capucinus
ENSLAFG00000004115	PTCD2	99	75.325	ENSCCAG00000021996	-	95	75.325	Cebus_capucinus
ENSLAFG00000004115	PTCD2	100	76.206	ENSCATG00000019069	PTCD2	81	76.206	Cercocebus_atys
ENSLAFG00000004115	PTCD2	100	72.347	ENSCLAG00000000072	PTCD2	81	72.347	Chinchilla_lanigera
ENSLAFG00000004115	PTCD2	100	78.135	ENSCSAG00000015623	PTCD2	81	78.135	Chlorocebus_sabaeus
ENSLAFG00000004115	PTCD2	88	56.522	ENSCHOG00000010634	PTCD2	79	56.522	Choloepus_hoffmanni
ENSLAFG00000004115	PTCD2	99	56.634	ENSCPBG00000000216	PTCD2	75	60.870	Chrysemys_picta_bellii
ENSLAFG00000004115	PTCD2	100	77.492	ENSCANG00000035636	PTCD2	80	77.492	Colobus_angolensis_palliatus
ENSLAFG00000004115	PTCD2	100	73.955	ENSCGRG00001015289	Ptcd2	68	73.955	Cricetulus_griseus_chok1gshd
ENSLAFG00000004115	PTCD2	100	73.955	ENSCGRG00000006193	Ptcd2	68	73.955	Cricetulus_griseus_crigri
ENSLAFG00000004115	PTCD2	98	46.732	ENSCVAG00000001285	ptcd2	71	49.455	Cyprinodon_variegatus
ENSLAFG00000004115	PTCD2	98	48.684	ENSDARG00000035391	ptcd2	72	50.909	Danio_rerio
ENSLAFG00000004115	PTCD2	100	81.350	ENSDNOG00000008719	PTCD2	81	81.350	Dasypus_novemcinctus
ENSLAFG00000004115	PTCD2	100	74.921	ENSDORG00000004921	Ptcd2	81	74.603	Dipodomys_ordii
ENSLAFG00000004115	PTCD2	100	72.115	ENSETEG00000016542	PTCD2	80	72.115	Echinops_telfairi
ENSLAFG00000004115	PTCD2	100	76.849	ENSEASG00005018038	PTCD2	81	76.849	Equus_asinus_asinus
ENSLAFG00000004115	PTCD2	100	76.527	ENSECAG00000007022	PTCD2	80	76.527	Equus_caballus
ENSLAFG00000004115	PTCD2	100	74.121	ENSEEUG00000014031	PTCD2	81	73.633	Erinaceus_europaeus
ENSLAFG00000004115	PTCD2	90	53.214	ENSELUG00000003584	ptcd2	72	53.650	Esox_lucius
ENSLAFG00000004115	PTCD2	100	72.669	ENSFCAG00000045432	PTCD2	66	72.669	Felis_catus
ENSLAFG00000004115	PTCD2	82	55.686	ENSFALG00000010299	PTCD2	78	55.686	Ficedula_albicollis
ENSLAFG00000004115	PTCD2	100	74.277	ENSFDAG00000018461	PTCD2	81	74.277	Fukomys_damarensis
ENSLAFG00000004115	PTCD2	88	53.957	ENSGMOG00000003637	ptcd2	72	53.957	Gadus_morhua
ENSLAFG00000004115	PTCD2	90	55.160	ENSGALG00000038260	PTCD2	72	55.636	Gallus_gallus
ENSLAFG00000004115	PTCD2	90	64.057	ENSGAGG00000021952	PTCD2	71	64.260	Gopherus_agassizii
ENSLAFG00000004115	PTCD2	100	78.135	ENSGGOG00000010695	PTCD2	80	78.135	Gorilla_gorilla
ENSLAFG00000004115	PTCD2	88	49.818	ENSHBUG00000009191	ptcd2	71	49.818	Haplochromis_burtoni
ENSLAFG00000004115	PTCD2	100	76.527	ENSHGLG00000001234	PTCD2	81	76.527	Heterocephalus_glaber_female
ENSLAFG00000004115	PTCD2	100	76.849	ENSHGLG00100015419	PTCD2	81	76.849	Heterocephalus_glaber_male
ENSLAFG00000004115	PTCD2	93	51.379	ENSHCOG00000001703	ptcd2	72	52.536	Hippocampus_comes
ENSLAFG00000004115	PTCD2	90	46.619	ENSIPUG00000006080	ptcd2	71	47.253	Ictalurus_punctatus
ENSLAFG00000004115	PTCD2	99	79.221	ENSSTOG00000006596	PTCD2	80	79.221	Ictidomys_tridecemlineatus
ENSLAFG00000004115	PTCD2	100	75.884	ENSJJAG00000024388	Ptcd2	81	75.884	Jaculus_jaculus
ENSLAFG00000004115	PTCD2	92	45.361	ENSKMAG00000009329	ptcd2	72	46.886	Kryptolebias_marmoratus
ENSLAFG00000004115	PTCD2	93	50.000	ENSLBEG00000024871	ptcd2	70	51.648	Labrus_bergylta
ENSLAFG00000004115	PTCD2	97	56.766	ENSLOCG00000011122	ptcd2	72	59.783	Lepisosteus_oculatus
ENSLAFG00000004115	PTCD2	100	76.206	ENSMFAG00000031516	PTCD2	80	76.206	Macaca_fascicularis
ENSLAFG00000004115	PTCD2	100	76.527	ENSMNEG00000007537	PTCD2	81	76.527	Macaca_nemestrina
ENSLAFG00000004115	PTCD2	100	76.527	ENSMLEG00000031093	PTCD2	80	76.527	Mandrillus_leucophaeus
ENSLAFG00000004115	PTCD2	93	52.941	ENSMAMG00000018529	ptcd2	72	54.182	Mastacembelus_armatus
ENSLAFG00000004115	PTCD2	88	50.182	ENSMZEG00005003625	ptcd2	71	50.182	Maylandia_zebra
ENSLAFG00000004115	PTCD2	89	55.435	ENSMGAG00000005033	PTCD2	79	55.435	Meleagris_gallopavo
ENSLAFG00000004115	PTCD2	80	74.038	ENSMAUG00000020253	Ptcd2	77	74.038	Mesocricetus_auratus
ENSLAFG00000004115	PTCD2	100	79.421	ENSMICG00000004535	PTCD2	80	79.421	Microcebus_murinus
ENSLAFG00000004115	PTCD2	100	72.669	ENSMOCG00000019985	Ptcd2	81	72.669	Microtus_ochrogaster
ENSLAFG00000004115	PTCD2	100	61.538	ENSMODG00000001695	PTCD2	81	61.538	Monodelphis_domestica
ENSLAFG00000004115	PTCD2	95	51.525	ENSMALG00000022372	ptcd2	72	53.455	Monopterus_albus
ENSLAFG00000004115	PTCD2	100	72.347	MGP_CAROLIEiJ_G0018829	Ptcd2	81	72.347	Mus_caroli
ENSLAFG00000004115	PTCD2	100	71.383	ENSMUSG00000021650	Ptcd2	81	71.383	Mus_musculus
ENSLAFG00000004115	PTCD2	100	73.633	MGP_PahariEiJ_G0015904	Ptcd2	81	73.633	Mus_pahari
ENSLAFG00000004115	PTCD2	100	72.026	MGP_SPRETEiJ_G0019711	Ptcd2	81	72.026	Mus_spretus
ENSLAFG00000004115	PTCD2	100	81.029	ENSMPUG00000014401	PTCD2	81	81.029	Mustela_putorius_furo
ENSLAFG00000004115	PTCD2	100	77.170	ENSMLUG00000007374	PTCD2	80	77.170	Myotis_lucifugus
ENSLAFG00000004115	PTCD2	100	75.241	ENSNGAG00000005027	Ptcd2	81	75.241	Nannospalax_galili
ENSLAFG00000004115	PTCD2	88	50.545	ENSNBRG00000008174	ptcd2	72	50.545	Neolamprologus_brichardi
ENSLAFG00000004115	PTCD2	83	50.775	ENSNBRG00000000092	-	82	50.775	Neolamprologus_brichardi
ENSLAFG00000004115	PTCD2	100	78.457	ENSNLEG00000004516	PTCD2	80	78.457	Nomascus_leucogenys
ENSLAFG00000004115	PTCD2	100	72.990	ENSOPRG00000007290	PTCD2	80	72.990	Ochotona_princeps
ENSLAFG00000004115	PTCD2	100	75.241	ENSODEG00000016417	PTCD2	81	75.241	Octodon_degus
ENSLAFG00000004115	PTCD2	88	50.545	ENSONIG00000011269	ptcd2	81	50.545	Oreochromis_niloticus
ENSLAFG00000004115	PTCD2	94	77.055	ENSOCUG00000007970	PTCD2	81	75.563	Oryctolagus_cuniculus
ENSLAFG00000004115	PTCD2	95	48.980	ENSORLG00000003851	ptcd2	70	50.916	Oryzias_latipes
ENSLAFG00000004115	PTCD2	95	48.639	ENSORLG00020009823	ptcd2	71	50.549	Oryzias_latipes_hni
ENSLAFG00000004115	PTCD2	88	50.183	ENSORLG00015016777	ptcd2	78	50.183	Oryzias_latipes_hsok
ENSLAFG00000004115	PTCD2	93	48.958	ENSOMEG00000012396	ptcd2	66	50.183	Oryzias_melastigma
ENSLAFG00000004115	PTCD2	100	76.527	ENSOGAG00000008390	PTCD2	80	76.527	Otolemur_garnettii
ENSLAFG00000004115	PTCD2	99	80.064	ENSOARG00000005087	PTCD2	80	80.064	Ovis_aries
ENSLAFG00000004115	PTCD2	100	78.135	ENSPPAG00000028480	PTCD2	80	78.135	Pan_paniscus
ENSLAFG00000004115	PTCD2	100	77.492	ENSPTRG00000016968	PTCD2	80	77.492	Pan_troglodytes
ENSLAFG00000004115	PTCD2	88	77.656	ENSPANG00000006611	PTCD2	70	77.656	Papio_anubis
ENSLAFG00000004115	PTCD2	91	53.684	ENSPKIG00000019896	ptcd2	72	53.597	Paramormyrops_kingsleyae
ENSLAFG00000004115	PTCD2	90	64.413	ENSPSIG00000014559	PTCD2	86	64.621	Pelodiscus_sinensis
ENSLAFG00000004115	PTCD2	100	73.633	ENSPEMG00000000884	Ptcd2	81	73.633	Peromyscus_maniculatus_bairdii
ENSLAFG00000004115	PTCD2	100	62.821	ENSPCIG00000029047	PTCD2	81	62.821	Phascolarctos_cinereus
ENSLAFG00000004115	PTCD2	98	47.231	ENSPLAG00000010456	ptcd2	77	46.906	Poecilia_latipinna
ENSLAFG00000004115	PTCD2	98	47.883	ENSPREG00000021797	ptcd2	75	47.231	Poecilia_reticulata
ENSLAFG00000004115	PTCD2	100	66.881	ENSPPYG00000015543	PTCD2	78	66.881	Pongo_abelii
ENSLAFG00000004115	PTCD2	99	70.874	ENSPCAG00000006806	PTCD2	98	70.874	Procavia_capensis
ENSLAFG00000004115	PTCD2	99	82.848	ENSPVAG00000010935	PTCD2	80	82.848	Pteropus_vampyrus
ENSLAFG00000004115	PTCD2	88	50.182	ENSPNYG00000003122	ptcd2	71	50.182	Pundamilia_nyererei
ENSLAFG00000004115	PTCD2	92	51.748	ENSPNAG00000021490	ptcd2	71	52.920	Pygocentrus_nattereri
ENSLAFG00000004115	PTCD2	100	73.955	ENSRNOG00000028403	Ptcd2	81	73.955	Rattus_norvegicus
ENSLAFG00000004115	PTCD2	100	70.096	ENSRBIG00000032929	PTCD2	79	70.096	Rhinopithecus_bieti
ENSLAFG00000004115	PTCD2	100	76.206	ENSRROG00000000080	PTCD2	81	76.206	Rhinopithecus_roxellana
ENSLAFG00000004115	PTCD2	100	78.135	ENSSBOG00000018911	PTCD2	81	78.135	Saimiri_boliviensis_boliviensis
ENSLAFG00000004115	PTCD2	100	64.103	ENSSHAG00000003833	PTCD2	81	64.103	Sarcophilus_harrisii
ENSLAFG00000004115	PTCD2	99	50.162	ENSSFOG00015015415	ptcd2	71	52.727	Scleropages_formosus
ENSLAFG00000004115	PTCD2	99	45.833	ENSSMAG00000010350	ptcd2	78	45.192	Scophthalmus_maximus
ENSLAFG00000004115	PTCD2	93	51.034	ENSSDUG00000008142	ptcd2	69	52.364	Seriola_dumerili
ENSLAFG00000004115	PTCD2	93	51.034	ENSSLDG00000015284	ptcd2	72	52.364	Seriola_lalandi_dorsalis
ENSLAFG00000004115	PTCD2	99	67.314	ENSSARG00000004983	PTCD2	99	67.314	Sorex_araneus
ENSLAFG00000004115	PTCD2	90	59.075	ENSSPUG00000000176	PTCD2	71	59.206	Sphenodon_punctatus
ENSLAFG00000004115	PTCD2	93	51.379	ENSSPAG00000008591	ptcd2	71	52.536	Stegastes_partitus
ENSLAFG00000004115	PTCD2	99	80.645	ENSSSCG00000016975	PTCD2	72	80.645	Sus_scrofa
ENSLAFG00000004115	PTCD2	88	54.909	ENSTGUG00000005705	PTCD2	79	54.909	Taeniopygia_guttata
ENSLAFG00000004115	PTCD2	94	80.205	ENSTBEG00000016559	PTCD2	76	80.205	Tupaia_belangeri
ENSLAFG00000004115	PTCD2	99	79.421	ENSTTRG00000011851	PTCD2	80	79.421	Tursiops_truncatus
ENSLAFG00000004115	PTCD2	100	79.743	ENSUAMG00000007583	PTCD2	73	79.743	Ursus_americanus
ENSLAFG00000004115	PTCD2	100	79.421	ENSUMAG00000007666	PTCD2	81	79.421	Ursus_maritimus
ENSLAFG00000004115	PTCD2	99	79.743	ENSVPAG00000009597	PTCD2	80	79.743	Vicugna_pacos
ENSLAFG00000004115	PTCD2	100	76.527	ENSVVUG00000007299	-	81	76.527	Vulpes_vulpes
ENSLAFG00000004115	PTCD2	92	57.143	ENSXETG00000031652	PTCD2	73	58.123	Xenopus_tropicalis
ENSLAFG00000004115	PTCD2	98	46.254	ENSXMAG00000005940	ptcd2	70	45.928	Xiphophorus_maculatus