EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLAFG00000004367 (Gene tree)
Gene ID: -
Gene Symbol: RC3H1
Alias: KIAA2025|RNF198|RP5-1198E17.5|roquin
Full Name: ring finger and CCCH-type domains 1
Gene Type: protein_coding
Species: Loxodonta_africana
Status: putative
Strand: Plus strand
Length: 46470 bases
Position: chrscaffold_16:27239931-27286400
Accession: 100668171
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLAFP00000003642	zf-CCCH	PF00642.24	0.00018	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLAFT00000004368	RC3H1-201	3291	XM_010591110	ENSLAFP00000003642	1097 (aa)	XP_010589412	G3SU47

Gene Model

Click here to download ENSLAFG00000004367's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLAFG00000004367's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLAFG00000004367	RC3H1	95	54.596	ENSLAFG00000003521	RC3H2	87	54.236

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLAFG00000004367	RC3H1	100	97.541	ENSG00000135870	RC3H1	97	97.541	Homo_sapiens
ENSLAFG00000004367	RC3H1	100	96.809	ENSAMEG00000015657	RC3H1	97	96.809	Ailuropoda_melanoleuca
ENSLAFG00000004367	RC3H1	99	88.919	ENSAPLG00000005341	RC3H1	97	88.368	Anas_platyrhynchos
ENSLAFG00000004367	RC3H1	99	86.204	ENSACAG00000015271	RC3H1	97	85.727	Anolis_carolinensis
ENSLAFG00000004367	RC3H1	100	97.541	ENSANAG00000036716	RC3H1	97	97.541	Aotus_nancymaae
ENSLAFG00000004367	RC3H1	100	95.719	ENSBTAG00000052708	RC3H1	97	95.719	Bos_taurus
ENSLAFG00000004367	RC3H1	100	97.177	ENSCJAG00000009106	RC3H1	97	97.177	Callithrix_jacchus
ENSLAFG00000004367	RC3H1	100	96.992	ENSCAFG00000014434	RC3H1	97	96.992	Canis_familiaris
ENSLAFG00000004367	RC3H1	100	96.992	ENSCAFG00020017112	RC3H1	99	98.202	Canis_lupus_dingo
ENSLAFG00000004367	RC3H1	100	96.080	ENSCHIG00000002873	RC3H1	97	96.080	Capra_hircus
ENSLAFG00000004367	RC3H1	99	95.716	ENSTSYG00000003913	RC3H1	97	95.716	Carlito_syrichta
ENSLAFG00000004367	RC3H1	100	92.441	ENSCPOG00000004349	RC3H1	97	92.168	Cavia_porcellus
ENSLAFG00000004367	RC3H1	100	95.082	ENSCCAG00000025652	RC3H1	98	97.225	Cebus_capucinus
ENSLAFG00000004367	RC3H1	100	97.632	ENSCATG00000033497	RC3H1	97	97.632	Cercocebus_atys
ENSLAFG00000004367	RC3H1	100	95.446	ENSCLAG00000011267	RC3H1	97	95.446	Chinchilla_lanigera
ENSLAFG00000004367	RC3H1	99	97.514	ENSCSAG00000011823	RC3H1	85	97.514	Chlorocebus_sabaeus
ENSLAFG00000004367	RC3H1	100	90.127	ENSCPBG00000014670	RC3H1	97	89.493	Chrysemys_picta_bellii
ENSLAFG00000004367	RC3H1	100	97.634	ENSCANG00000032120	RC3H1	97	97.634	Colobus_angolensis_palliatus
ENSLAFG00000004367	RC3H1	100	95.169	ENSCGRG00001020812	Rc3h1	97	94.713	Cricetulus_griseus_chok1gshd
ENSLAFG00000004367	RC3H1	100	95.169	ENSCGRG00000011952	Rc3h1	97	94.713	Cricetulus_griseus_crigri
ENSLAFG00000004367	RC3H1	57	95.981	ENSDNOG00000011494	RC3H1	99	95.981	Dasypus_novemcinctus
ENSLAFG00000004367	RC3H1	100	95.442	ENSDORG00000004855	Rc3h1	97	95.351	Dipodomys_ordii
ENSLAFG00000004367	RC3H1	81	97.365	ENSETEG00000012064	RC3H1	84	97.365	Echinops_telfairi
ENSLAFG00000004367	RC3H1	100	95.807	ENSEASG00005017000	RC3H1	97	95.807	Equus_asinus_asinus
ENSLAFG00000004367	RC3H1	100	95.716	ENSECAG00000021208	RC3H1	97	95.716	Equus_caballus
ENSLAFG00000004367	RC3H1	92	83.302	ENSEEUG00000014861	RC3H1	93	83.302	Erinaceus_europaeus
ENSLAFG00000004367	RC3H1	100	97.268	ENSFCAG00000014924	RC3H1	97	97.268	Felis_catus
ENSLAFG00000004367	RC3H1	99	87.455	ENSFALG00000002947	RC3H1	97	86.269	Ficedula_albicollis
ENSLAFG00000004367	RC3H1	100	95.446	ENSFDAG00000013303	RC3H1	97	95.446	Fukomys_damarensis
ENSLAFG00000004367	RC3H1	100	87.873	ENSGALG00000004587	RC3H1	97	87.319	Gallus_gallus
ENSLAFG00000004367	RC3H1	100	88.315	ENSGAGG00000018194	RC3H1	97	88.043	Gopherus_agassizii
ENSLAFG00000004367	RC3H1	100	90.290	ENSGGOG00000005735	RC3H1	97	90.290	Gorilla_gorilla
ENSLAFG00000004367	RC3H1	88	89.175	ENSHGLG00000004183	-	96	89.130	Heterocephalus_glaber_female
ENSLAFG00000004367	RC3H1	100	94.900	ENSHGLG00100008577	RC3H1	97	94.900	Heterocephalus_glaber_male
ENSLAFG00000004367	RC3H1	100	96.539	ENSSTOG00000016033	RC3H1	97	96.539	Ictidomys_tridecemlineatus
ENSLAFG00000004367	RC3H1	100	95.716	ENSJJAG00000018915	Rc3h1	97	95.351	Jaculus_jaculus
ENSLAFG00000004367	RC3H1	99	75.968	ENSLACG00000016186	RC3H1	100	77.964	Latimeria_chalumnae
ENSLAFG00000004367	RC3H1	100	97.541	ENSMFAG00000033725	RC3H1	97	97.541	Macaca_fascicularis
ENSLAFG00000004367	RC3H1	100	97.450	ENSMMUG00000000630	RC3H1	98	97.330	Macaca_mulatta
ENSLAFG00000004367	RC3H1	100	97.632	ENSMNEG00000035968	RC3H1	97	97.632	Macaca_nemestrina
ENSLAFG00000004367	RC3H1	100	97.541	ENSMLEG00000037455	RC3H1	97	97.541	Mandrillus_leucophaeus
ENSLAFG00000004367	RC3H1	90	94.859	ENSMAUG00000020864	Rc3h1	93	94.355	Mesocricetus_auratus
ENSLAFG00000004367	RC3H1	100	97.721	ENSMICG00000003000	RC3H1	97	97.721	Microcebus_murinus
ENSLAFG00000004367	RC3H1	93	93.431	ENSMOCG00000016587	Rc3h1	95	93.039	Microtus_ochrogaster
ENSLAFG00000004367	RC3H1	100	92.812	ENSMODG00000004289	RC3H1	97	92.903	Monodelphis_domestica
ENSLAFG00000004367	RC3H1	100	93.984	MGP_CAROLIEiJ_G0014756	Rc3h1	97	93.528	Mus_caroli
ENSLAFG00000004367	RC3H1	100	93.892	ENSMUSG00000040423	Rc3h1	97	93.437	Mus_musculus
ENSLAFG00000004367	RC3H1	100	93.710	MGP_PahariEiJ_G0027992	Rc3h1	97	93.254	Mus_pahari
ENSLAFG00000004367	RC3H1	100	93.710	MGP_SPRETEiJ_G0015563	Rc3h1	97	93.254	Mus_spretus
ENSLAFG00000004367	RC3H1	100	96.721	ENSMPUG00000004747	RC3H1	97	96.721	Mustela_putorius_furo
ENSLAFG00000004367	RC3H1	100	95.260	ENSMLUG00000011127	RC3H1	97	95.260	Myotis_lucifugus
ENSLAFG00000004367	RC3H1	100	96.171	ENSNGAG00000011135	Rc3h1	97	95.716	Nannospalax_galili
ENSLAFG00000004367	RC3H1	100	97.541	ENSNLEG00000015327	RC3H1	97	97.541	Nomascus_leucogenys
ENSLAFG00000004367	RC3H1	99	83.715	ENSOPRG00000013068	RC3H1	97	83.196	Ochotona_princeps
ENSLAFG00000004367	RC3H1	100	94.900	ENSODEG00000014185	RC3H1	97	94.900	Octodon_degus
ENSLAFG00000004367	RC3H1	100	91.261	ENSOANG00000000924	RC3H1	97	91.441	Ornithorhynchus_anatinus
ENSLAFG00000004367	RC3H1	100	96.445	ENSOCUG00000004930	RC3H1	97	96.445	Oryctolagus_cuniculus
ENSLAFG00000004367	RC3H1	100	90.173	ENSOGAG00000004044	RC3H1	97	90.173	Otolemur_garnettii
ENSLAFG00000004367	RC3H1	100	96.199	ENSOARG00000013011	RC3H1	97	96.199	Ovis_aries
ENSLAFG00000004367	RC3H1	100	97.543	ENSPPAG00000039253	RC3H1	97	97.543	Pan_paniscus
ENSLAFG00000004367	RC3H1	100	96.718	ENSPPRG00000009007	RC3H1	97	96.718	Panthera_pardus
ENSLAFG00000004367	RC3H1	100	97.096	ENSPTIG00000015326	RC3H1	97	97.096	Panthera_tigris_altaica
ENSLAFG00000004367	RC3H1	100	97.543	ENSPTRG00000001702	RC3H1	97	97.543	Pan_troglodytes
ENSLAFG00000004367	RC3H1	100	97.541	ENSPANG00000008886	RC3H1	97	97.541	Papio_anubis
ENSLAFG00000004367	RC3H1	100	89.140	ENSPSIG00000016181	RC3H1	97	89.050	Pelodiscus_sinensis
ENSLAFG00000004367	RC3H1	100	94.348	ENSPEMG00000011966	Rc3h1	97	93.801	Peromyscus_maniculatus_bairdii
ENSLAFG00000004367	RC3H1	72	95.063	ENSPCIG00000002058	RC3H1	95	98.430	Phascolarctos_cinereus
ENSLAFG00000004367	RC3H1	100	94.080	ENSPPYG00000000490	RC3H1	98	96.651	Pongo_abelii
ENSLAFG00000004367	RC3H1	80	100.000	ENSPCAG00000010775	RC3H1	84	100.000	Procavia_capensis
ENSLAFG00000004367	RC3H1	82	97.111	ENSPCOG00000021795	RC3H1	92	97.111	Propithecus_coquereli
ENSLAFG00000004367	RC3H1	100	87.876	ENSPVAG00000007593	RC3H1	97	87.876	Pteropus_vampyrus
ENSLAFG00000004367	RC3H1	99	62.100	ENSPNAG00000023439	rc3h1a	95	90.991	Pygocentrus_nattereri
ENSLAFG00000004367	RC3H1	100	97.543	ENSRBIG00000037743	RC3H1	97	97.543	Rhinopithecus_bieti
ENSLAFG00000004367	RC3H1	100	97.450	ENSRROG00000036546	RC3H1	97	97.450	Rhinopithecus_roxellana
ENSLAFG00000004367	RC3H1	90	91.507	ENSSBOG00000010664	RC3H1	96	91.185	Saimiri_boliviensis_boliviensis
ENSLAFG00000004367	RC3H1	100	91.818	ENSSHAG00000007589	RC3H1	97	91.909	Sarcophilus_harrisii
ENSLAFG00000004367	RC3H1	86	86.712	ENSSARG00000004660	RC3H1	83	86.712	Sorex_araneus
ENSLAFG00000004367	RC3H1	100	85.262	ENSSPUG00000018472	RC3H1	97	84.525	Sphenodon_punctatus
ENSLAFG00000004367	RC3H1	100	97.174	ENSSSCG00000015498	RC3H1	97	97.174	Sus_scrofa
ENSLAFG00000004367	RC3H1	99	88.033	ENSTGUG00000004090	RC3H1	97	87.296	Taeniopygia_guttata
ENSLAFG00000004367	RC3H1	93	90.800	ENSTBEG00000005015	RC3H1	90	90.800	Tupaia_belangeri
ENSLAFG00000004367	RC3H1	99	96.451	ENSTTRG00000008572	RC3H1	97	96.451	Tursiops_truncatus
ENSLAFG00000004367	RC3H1	100	96.445	ENSUAMG00000019525	RC3H1	97	96.445	Ursus_americanus
ENSLAFG00000004367	RC3H1	100	96.903	ENSUMAG00000020087	RC3H1	97	96.903	Ursus_maritimus
ENSLAFG00000004367	RC3H1	91	98.649	ENSVPAG00000002591	RC3H1	89	98.649	Vicugna_pacos
ENSLAFG00000004367	RC3H1	100	96.639	ENSVVUG00000014201	RC3H1	97	96.639	Vulpes_vulpes
ENSLAFG00000004367	RC3H1	99	79.478	ENSXETG00000020030	rc3h1	97	78.739	Xenopus_tropicalis