EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLAFG00000005211 (Gene tree)
Gene ID: -
Gene Symbol: RPUSD4
Alias: FLJ14494
Full Name: RNA pseudouridine synthase D4
Gene Type: protein_coding
Species: Loxodonta_africana
Status: putative
Strand: Plus strand
Length: 8272 bases
Position: chrscaffold_50:14911708-14919979
Accession: 25898
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLAFP00000004359	PseudoU_synth_2	PF00849.22	1.5e-30	1	1
ENSLAFP00000022021	PseudoU_synth_2	PF00849.22	2.6e-28	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLAFT00000025494	RPUSD4-202	822	-	ENSLAFP00000022021	274 (aa)	-	G3U2G3
ENSLAFT00000005210	RPUSD4-201	1131	-	ENSLAFP00000004359	376 (aa)	-	G3SVS0

Gene Model

Click here to download ENSLAFG00000005211's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLAFG00000005211's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLAFG00000005211	RPUSD4	99	31.295	ENSLAFG00000017501	RPUSD3	80	31.295

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLAFG00000005211	RPUSD4	100	81.481	ENSG00000165526	RPUSD4	100	81.481	Homo_sapiens
ENSLAFG00000005211	RPUSD4	100	45.085	ENSAPOG00000011024	rpusd4	85	51.613	Acanthochromis_polyacanthus
ENSLAFG00000005211	RPUSD4	82	69.186	ENSAMEG00000005953	-	98	69.186	Ailuropoda_melanoleuca
ENSLAFG00000005211	RPUSD4	100	81.698	ENSAMEG00000000127	-	100	81.698	Ailuropoda_melanoleuca
ENSLAFG00000005211	RPUSD4	100	44.068	ENSACIG00000003533	rpusd4	93	51.411	Amphilophus_citrinellus
ENSLAFG00000005211	RPUSD4	100	44.746	ENSAOCG00000015409	rpusd4	81	51.506	Amphiprion_ocellaris
ENSLAFG00000005211	RPUSD4	100	45.085	ENSAPEG00000018935	rpusd4	81	51.807	Amphiprion_percula
ENSLAFG00000005211	RPUSD4	99	46.233	ENSATEG00000008059	rpusd4	85	49.565	Anabas_testudineus
ENSLAFG00000005211	RPUSD4	99	50.172	ENSAPLG00000013250	RPUSD4	99	58.983	Anas_platyrhynchos
ENSLAFG00000005211	RPUSD4	100	57.338	ENSACAG00000000189	RPUSD4	100	59.783	Anolis_carolinensis
ENSLAFG00000005211	RPUSD4	98	82.258	ENSANAG00000024050	RPUSD4	99	82.258	Aotus_nancymaae
ENSLAFG00000005211	RPUSD4	100	45.424	ENSACLG00000020996	rpusd4	86	51.775	Astatotilapia_calliptera
ENSLAFG00000005211	RPUSD4	100	43.345	ENSAMXG00000031479	rpusd4	95	50.148	Astyanax_mexicanus
ENSLAFG00000005211	RPUSD4	100	77.454	ENSBTAG00000020900	RPUSD4	100	77.454	Bos_taurus
ENSLAFG00000005211	RPUSD4	98	82.749	ENSCJAG00000042850	RPUSD4	93	82.749	Callithrix_jacchus
ENSLAFG00000005211	RPUSD4	100	80.952	ENSCAFG00000010488	RPUSD4	100	80.952	Canis_familiaris
ENSLAFG00000005211	RPUSD4	100	80.952	ENSCAFG00020010621	RPUSD4	100	80.952	Canis_lupus_dingo
ENSLAFG00000005211	RPUSD4	100	78.042	ENSCHIG00000009975	RPUSD4	100	78.042	Capra_hircus
ENSLAFG00000005211	RPUSD4	100	83.777	ENSTSYG00000008456	RPUSD4	100	83.777	Carlito_syrichta
ENSLAFG00000005211	RPUSD4	89	67.816	ENSCAPG00000006040	RPUSD4	100	76.744	Cavia_aperea
ENSLAFG00000005211	RPUSD4	100	77.926	ENSCPOG00000014971	RPUSD4	100	77.926	Cavia_porcellus
ENSLAFG00000005211	RPUSD4	98	83.065	ENSCCAG00000027838	RPUSD4	99	83.065	Cebus_capucinus
ENSLAFG00000005211	RPUSD4	100	81.217	ENSCATG00000041570	RPUSD4	100	81.217	Cercocebus_atys
ENSLAFG00000005211	RPUSD4	100	79.576	ENSCLAG00000016553	RPUSD4	100	79.576	Chinchilla_lanigera
ENSLAFG00000005211	RPUSD4	100	81.746	ENSCSAG00000002274	RPUSD4	100	81.746	Chlorocebus_sabaeus
ENSLAFG00000005211	RPUSD4	99	73.077	ENSCHOG00000010249	RPUSD4	100	84.452	Choloepus_hoffmanni
ENSLAFG00000005211	RPUSD4	100	57.877	ENSCPBG00000011175	RPUSD4	99	67.128	Chrysemys_picta_bellii
ENSLAFG00000005211	RPUSD4	99	38.384	ENSCSAVG00000000872	-	63	38.390	Ciona_savignyi
ENSLAFG00000005211	RPUSD4	100	79.894	ENSCANG00000039684	RPUSD4	100	79.894	Colobus_angolensis_palliatus
ENSLAFG00000005211	RPUSD4	100	80.106	ENSCGRG00001024141	Rpusd4	100	80.106	Cricetulus_griseus_chok1gshd
ENSLAFG00000005211	RPUSD4	100	80.106	ENSCGRG00000014415	Rpusd4	100	80.106	Cricetulus_griseus_crigri
ENSLAFG00000005211	RPUSD4	100	44.068	ENSCVAG00000008761	rpusd4	84	51.205	Cyprinodon_variegatus
ENSLAFG00000005211	RPUSD4	100	44.407	ENSCVAG00000000392	rpusd4	94	51.506	Cyprinodon_variegatus
ENSLAFG00000005211	RPUSD4	100	44.027	ENSDARG00000012674	rpusd4	96	49.128	Danio_rerio
ENSLAFG00000005211	RPUSD4	100	80.902	ENSDNOG00000020026	RPUSD4	100	80.902	Dasypus_novemcinctus
ENSLAFG00000005211	RPUSD4	100	81.432	ENSDORG00000016717	Rpusd4	100	81.432	Dipodomys_ordii
ENSLAFG00000005211	RPUSD4	99	82.306	ENSETEG00000013953	RPUSD4	99	82.306	Echinops_telfairi
ENSLAFG00000005211	RPUSD4	100	83.862	ENSEASG00005022982	RPUSD4	100	83.862	Equus_asinus_asinus
ENSLAFG00000005211	RPUSD4	100	83.598	ENSECAG00000000557	RPUSD4	100	83.598	Equus_caballus
ENSLAFG00000005211	RPUSD4	82	77.368	ENSEEUG00000014036	RPUSD4	81	78.495	Erinaceus_europaeus
ENSLAFG00000005211	RPUSD4	100	46.758	ENSELUG00000008075	rpusd4	88	53.097	Esox_lucius
ENSLAFG00000005211	RPUSD4	100	80.902	ENSFCAG00000029789	RPUSD4	100	80.902	Felis_catus
ENSLAFG00000005211	RPUSD4	100	51.712	ENSFALG00000005171	RPUSD4	98	57.831	Ficedula_albicollis
ENSLAFG00000005211	RPUSD4	100	81.698	ENSFDAG00000014307	RPUSD4	100	81.698	Fukomys_damarensis
ENSLAFG00000005211	RPUSD4	100	44.746	ENSFHEG00000004329	rpusd4	87	51.775	Fundulus_heteroclitus
ENSLAFG00000005211	RPUSD4	100	43.197	ENSGMOG00000017726	rpusd4	96	50.462	Gadus_morhua
ENSLAFG00000005211	RPUSD4	99	53.608	ENSGALG00000024326	RPUSD4	94	58.036	Gallus_gallus
ENSLAFG00000005211	RPUSD4	100	42.712	ENSGAFG00000021559	rpusd4	87	48.991	Gambusia_affinis
ENSLAFG00000005211	RPUSD4	100	42.034	ENSGACG00000001657	rpusd4	100	49.306	Gasterosteus_aculeatus
ENSLAFG00000005211	RPUSD4	100	57.534	ENSGAGG00000000132	RPUSD4	97	61.891	Gopherus_agassizii
ENSLAFG00000005211	RPUSD4	100	80.952	ENSGGOG00000016494	RPUSD4	100	80.952	Gorilla_gorilla
ENSLAFG00000005211	RPUSD4	100	45.424	ENSHBUG00000022838	rpusd4	86	51.775	Haplochromis_burtoni
ENSLAFG00000005211	RPUSD4	100	81.167	ENSHGLG00000002285	RPUSD4	100	81.167	Heterocephalus_glaber_female
ENSLAFG00000005211	RPUSD4	100	81.167	ENSHGLG00100006385	RPUSD4	100	81.167	Heterocephalus_glaber_male
ENSLAFG00000005211	RPUSD4	100	45.424	ENSHCOG00000006612	rpusd4	84	52.711	Hippocampus_comes
ENSLAFG00000005211	RPUSD4	100	43.345	ENSIPUG00000023879	rusd4	94	49.448	Ictalurus_punctatus
ENSLAFG00000005211	RPUSD4	97	81.818	ENSSTOG00000025280	RPUSD4	100	81.818	Ictidomys_tridecemlineatus
ENSLAFG00000005211	RPUSD4	98	83.243	ENSJJAG00000018673	Rpusd4	99	83.243	Jaculus_jaculus
ENSLAFG00000005211	RPUSD4	100	46.102	ENSKMAG00000021805	rpusd4	88	53.097	Kryptolebias_marmoratus
ENSLAFG00000005211	RPUSD4	100	43.729	ENSLBEG00000020394	rpusd4	93	50.442	Labrus_bergylta
ENSLAFG00000005211	RPUSD4	100	55.479	ENSLACG00000011028	RPUSD4	85	61.012	Latimeria_chalumnae
ENSLAFG00000005211	RPUSD4	100	44.170	ENSLOCG00000003124	rpusd4	87	49.541	Lepisosteus_oculatus
ENSLAFG00000005211	RPUSD4	100	81.481	ENSMFAG00000039513	RPUSD4	100	81.481	Macaca_fascicularis
ENSLAFG00000005211	RPUSD4	100	81.217	ENSMMUG00000007933	RPUSD4	100	81.217	Macaca_mulatta
ENSLAFG00000005211	RPUSD4	100	81.217	ENSMNEG00000027414	RPUSD4	100	81.217	Macaca_nemestrina
ENSLAFG00000005211	RPUSD4	100	82.011	ENSMLEG00000042461	RPUSD4	100	82.011	Mandrillus_leucophaeus
ENSLAFG00000005211	RPUSD4	100	43.051	ENSMAMG00000023839	rpusd4	84	49.846	Mastacembelus_armatus
ENSLAFG00000005211	RPUSD4	100	45.424	ENSMZEG00005011999	rpusd4	86	51.775	Maylandia_zebra
ENSLAFG00000005211	RPUSD4	99	52.577	ENSMGAG00000000840	RPUSD4	99	58.567	Meleagris_gallopavo
ENSLAFG00000005211	RPUSD4	100	79.310	ENSMAUG00000010280	Rpusd4	100	79.310	Mesocricetus_auratus
ENSLAFG00000005211	RPUSD4	100	83.069	ENSMICG00000015979	RPUSD4	100	83.069	Microcebus_murinus
ENSLAFG00000005211	RPUSD4	98	76.550	ENSMOCG00000000661	Rpusd4	98	76.550	Microtus_ochrogaster
ENSLAFG00000005211	RPUSD4	100	45.085	ENSMMOG00000021731	rpusd4	92	53.355	Mola_mola
ENSLAFG00000005211	RPUSD4	92	74.640	ENSMODG00000004521	RPUSD4	89	74.640	Monodelphis_domestica
ENSLAFG00000005211	RPUSD4	100	45.085	ENSMALG00000005839	rpusd4	97	52.012	Monopterus_albus
ENSLAFG00000005211	RPUSD4	100	78.515	MGP_CAROLIEiJ_G0031954	Rpusd4	100	78.515	Mus_caroli
ENSLAFG00000005211	RPUSD4	99	78.342	ENSMUSG00000032044	Rpusd4	99	78.342	Mus_musculus
ENSLAFG00000005211	RPUSD4	100	79.310	MGP_PahariEiJ_G0014819	Rpusd4	100	79.310	Mus_pahari
ENSLAFG00000005211	RPUSD4	99	78.610	MGP_SPRETEiJ_G0033078	Rpusd4	99	78.610	Mus_spretus
ENSLAFG00000005211	RPUSD4	99	79.733	ENSMPUG00000006608	RPUSD4	99	79.733	Mustela_putorius_furo
ENSLAFG00000005211	RPUSD4	97	82.240	ENSMLUG00000017328	-	96	82.240	Myotis_lucifugus
ENSLAFG00000005211	RPUSD4	93	71.111	ENSMLUG00000029348	-	100	84.252	Myotis_lucifugus
ENSLAFG00000005211	RPUSD4	99	79.032	ENSNGAG00000020847	Rpusd4	99	79.032	Nannospalax_galili
ENSLAFG00000005211	RPUSD4	100	45.424	ENSNBRG00000005207	rpusd4	95	52.439	Neolamprologus_brichardi
ENSLAFG00000005211	RPUSD4	100	81.481	ENSNLEG00000007465	RPUSD4	100	81.481	Nomascus_leucogenys
ENSLAFG00000005211	RPUSD4	98	71.351	ENSMEUG00000004370	RPUSD4	99	71.351	Notamacropus_eugenii
ENSLAFG00000005211	RPUSD4	70	60.227	ENSOPRG00000013141	-	100	60.227	Ochotona_princeps
ENSLAFG00000005211	RPUSD4	100	78.780	ENSODEG00000004577	RPUSD4	100	78.780	Octodon_degus
ENSLAFG00000005211	RPUSD4	100	45.424	ENSONIG00000018879	rpusd4	94	51.420	Oreochromis_niloticus
ENSLAFG00000005211	RPUSD4	99	59.655	ENSOANG00000007247	RPUSD4	95	69.360	Ornithorhynchus_anatinus
ENSLAFG00000005211	RPUSD4	99	81.720	ENSOCUG00000017039	RPUSD4	99	81.501	Oryctolagus_cuniculus
ENSLAFG00000005211	RPUSD4	99	42.857	ENSORLG00000002750	rpusd4	92	48.665	Oryzias_latipes
ENSLAFG00000005211	RPUSD4	99	42.517	ENSORLG00020002044	rpusd4	82	49.547	Oryzias_latipes_hni
ENSLAFG00000005211	RPUSD4	99	42.857	ENSORLG00015020034	rpusd4	82	49.394	Oryzias_latipes_hsok
ENSLAFG00000005211	RPUSD4	99	45.205	ENSOMEG00000004861	rpusd4	84	51.170	Oryzias_melastigma
ENSLAFG00000005211	RPUSD4	100	79.365	ENSOGAG00000008922	RPUSD4	100	79.365	Otolemur_garnettii
ENSLAFG00000005211	RPUSD4	98	78.320	ENSOARG00000012238	RPUSD4	97	78.320	Ovis_aries
ENSLAFG00000005211	RPUSD4	100	81.746	ENSPPAG00000042883	RPUSD4	93	81.746	Pan_paniscus
ENSLAFG00000005211	RPUSD4	100	80.902	ENSPPRG00000003081	RPUSD4	100	80.902	Panthera_pardus
ENSLAFG00000005211	RPUSD4	100	80.902	ENSPTIG00000012059	RPUSD4	100	80.902	Panthera_tigris_altaica
ENSLAFG00000005211	RPUSD4	100	81.481	ENSPTRG00000004454	RPUSD4	100	81.481	Pan_troglodytes
ENSLAFG00000005211	RPUSD4	100	81.217	ENSPANG00000015040	RPUSD4	100	81.217	Papio_anubis
ENSLAFG00000005211	RPUSD4	100	50.853	ENSPKIG00000023986	rpusd4	92	54.696	Paramormyrops_kingsleyae
ENSLAFG00000005211	RPUSD4	100	57.192	ENSPSIG00000014268	RPUSD4	95	66.000	Pelodiscus_sinensis
ENSLAFG00000005211	RPUSD4	99	42.808	ENSPMGG00000002806	rpusd4	89	50.000	Periophthalmus_magnuspinnatus
ENSLAFG00000005211	RPUSD4	100	72.414	ENSPEMG00000000278	Rpusd4	100	72.414	Peromyscus_maniculatus_bairdii
ENSLAFG00000005211	RPUSD4	100	41.250	ENSPMAG00000008183	rpusd4	98	42.604	Petromyzon_marinus
ENSLAFG00000005211	RPUSD4	97	74.451	ENSPCIG00000010212	RPUSD4	100	74.451	Phascolarctos_cinereus
ENSLAFG00000005211	RPUSD4	100	44.108	ENSPFOG00000019030	rpusd4	90	50.430	Poecilia_formosa
ENSLAFG00000005211	RPUSD4	100	44.746	ENSPLAG00000016848	rpusd4	87	51.009	Poecilia_latipinna
ENSLAFG00000005211	RPUSD4	100	43.390	ENSPMEG00000017534	rpusd4	87	49.856	Poecilia_mexicana
ENSLAFG00000005211	RPUSD4	95	44.128	ENSPREG00000005689	rpusd4	83	51.242	Poecilia_reticulata
ENSLAFG00000005211	RPUSD4	100	82.540	ENSPPYG00000004043	RPUSD4	100	82.540	Pongo_abelii
ENSLAFG00000005211	RPUSD4	73	92.857	ENSPCAG00000000753	RPUSD4	81	82.051	Procavia_capensis
ENSLAFG00000005211	RPUSD4	98	76.550	ENSPCOG00000020694	RPUSD4	100	76.550	Propithecus_coquereli
ENSLAFG00000005211	RPUSD4	100	83.024	ENSPVAG00000000988	RPUSD4	100	83.024	Pteropus_vampyrus
ENSLAFG00000005211	RPUSD4	100	44.407	ENSPNYG00000009652	rpusd4	86	50.888	Pundamilia_nyererei
ENSLAFG00000005211	RPUSD4	100	44.027	ENSPNAG00000012264	rpusd4	89	52.212	Pygocentrus_nattereri
ENSLAFG00000005211	RPUSD4	99	79.679	ENSRNOG00000011567	Rpusd4	99	79.679	Rattus_norvegicus
ENSLAFG00000005211	RPUSD4	100	80.423	ENSRBIG00000034842	RPUSD4	100	80.423	Rhinopithecus_bieti
ENSLAFG00000005211	RPUSD4	100	80.423	ENSRROG00000039753	RPUSD4	100	80.423	Rhinopithecus_roxellana
ENSLAFG00000005211	RPUSD4	98	81.671	ENSSBOG00000030413	RPUSD4	99	81.452	Saimiri_boliviensis_boliviensis
ENSLAFG00000005211	RPUSD4	100	66.552	ENSSHAG00000008304	RPUSD4	100	77.152	Sarcophilus_harrisii
ENSLAFG00000005211	RPUSD4	100	50.171	ENSSFOG00015006203	rpusd4	92	55.162	Scleropages_formosus
ENSLAFG00000005211	RPUSD4	100	44.068	ENSSMAG00000020978	rpusd4	87	50.760	Scophthalmus_maximus
ENSLAFG00000005211	RPUSD4	99	42.857	ENSSDUG00000013399	rpusd4	86	49.398	Seriola_dumerili
ENSLAFG00000005211	RPUSD4	99	42.857	ENSSLDG00000023507	rpusd4	86	48.632	Seriola_lalandi_dorsalis
ENSLAFG00000005211	RPUSD4	100	57.877	ENSSPUG00000001401	RPUSD4	92	64.583	Sphenodon_punctatus
ENSLAFG00000005211	RPUSD4	100	45.085	ENSSPAG00000012163	rpusd4	88	50.867	Stegastes_partitus
ENSLAFG00000005211	RPUSD4	100	81.383	ENSSSCG00000015233	RPUSD4	100	81.383	Sus_scrofa
ENSLAFG00000005211	RPUSD4	100	51.370	ENSTGUG00000000773	RPUSD4	100	59.667	Taeniopygia_guttata
ENSLAFG00000005211	RPUSD4	100	44.746	ENSTRUG00000012283	rpusd4	84	51.976	Takifugu_rubripes
ENSLAFG00000005211	RPUSD4	100	43.729	ENSTNIG00000014676	rpusd4	88	48.406	Tetraodon_nigroviridis
ENSLAFG00000005211	RPUSD4	100	80.585	ENSTTRG00000001555	RPUSD4	100	80.585	Tursiops_truncatus
ENSLAFG00000005211	RPUSD4	56	71.242	ENSUAMG00000005500	-	100	78.125	Ursus_americanus
ENSLAFG00000005211	RPUSD4	100	81.432	ENSUMAG00000002219	RPUSD4	100	81.432	Ursus_maritimus
ENSLAFG00000005211	RPUSD4	70	82.576	ENSVPAG00000001066	RPUSD4	100	82.576	Vicugna_pacos
ENSLAFG00000005211	RPUSD4	100	80.423	ENSVVUG00000020101	RPUSD4	100	80.423	Vulpes_vulpes
ENSLAFG00000005211	RPUSD4	100	44.407	ENSXCOG00000004676	rpusd4	89	50.725	Xiphophorus_couchianus
ENSLAFG00000005211	RPUSD4	100	44.407	ENSXMAG00000023351	rpusd4	87	51.014	Xiphophorus_maculatus