EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLAFG00000005819 (Gene tree)
Gene ID: -
Gene Symbol: SNRPD1
Alias: HsT2456|SNRPD|Sm-D1
Full Name: small nuclear ribonucleoprotein D1 polypeptide
Gene Type: protein_coding
Species: Loxodonta_africana
Status: putative
Strand: Minus strand
Length: 7749 bases
Position: chrscaffold_4:80635633-80643381
Accession: 11158
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLAFP00000004876	LSM	PF01423.22	5.6e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLAFT00000005819	SNRPD1-201	357	-	ENSLAFP00000004876	118 (aa)	-	G3SWY6

Gene Model

Click here to download ENSLAFG00000005819's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLAFG00000005819's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLAFG00000005819	SNRPD1	58	32.394	ENSLAFG00000016139	LSM2	76	32.394

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLAFG00000005819	SNRPD1	100	98.305	ENSG00000167088	SNRPD1	100	100.000	Homo_sapiens
ENSLAFG00000005819	SNRPD1	94	94.595	ENSAPOG00000019446	snrpd1	61	94.595	Acanthochromis_polyacanthus
ENSLAFG00000005819	SNRPD1	99	99.145	ENSAMEG00000002576	SNRPD1	100	99.145	Ailuropoda_melanoleuca
ENSLAFG00000005819	SNRPD1	95	96.429	ENSACIG00000011263	snrpd1	100	96.429	Amphilophus_citrinellus
ENSLAFG00000005819	SNRPD1	94	94.595	ENSAOCG00000007406	snrpd1	93	94.595	Amphiprion_ocellaris
ENSLAFG00000005819	SNRPD1	94	90.090	ENSAPEG00000014961	snrpd1	93	90.090	Amphiprion_percula
ENSLAFG00000005819	SNRPD1	95	96.429	ENSAPEG00000012539	SNRPD1	100	96.429	Amphiprion_percula
ENSLAFG00000005819	SNRPD1	95	96.429	ENSATEG00000014399	snrpd1	100	96.429	Anabas_testudineus
ENSLAFG00000005819	SNRPD1	97	100.000	ENSAPLG00000012256	SNRPD1	97	100.000	Anas_platyrhynchos
ENSLAFG00000005819	SNRPD1	100	98.305	ENSACAG00000006364	SNRPD1	99	98.305	Anolis_carolinensis
ENSLAFG00000005819	SNRPD1	100	98.305	ENSANAG00000025641	SNRPD1	99	98.305	Aotus_nancymaae
ENSLAFG00000005819	SNRPD1	95	96.429	ENSACLG00000017406	snrpd1	100	96.429	Astatotilapia_calliptera
ENSLAFG00000005819	SNRPD1	94	95.495	ENSAMXG00000004589	snrpd1	93	95.495	Astyanax_mexicanus
ENSLAFG00000005819	SNRPD1	80	94.681	ENSBTAG00000055316	-	81	94.681	Bos_taurus
ENSLAFG00000005819	SNRPD1	94	95.495	ENSBTAG00000047266	-	93	95.495	Bos_taurus
ENSLAFG00000005819	SNRPD1	81	95.789	ENSBTAG00000012376	-	71	95.789	Bos_taurus
ENSLAFG00000005819	SNRPD1	100	98.305	ENSBTAG00000008292	SNRPD1	99	98.305	Bos_taurus
ENSLAFG00000005819	SNRPD1	74	78.161	WBGene00004916	snr-3	75	73.684	Caenorhabditis_elegans
ENSLAFG00000005819	SNRPD1	100	98.305	ENSCJAG00000042955	SNRPD1	99	98.305	Callithrix_jacchus
ENSLAFG00000005819	SNRPD1	100	98.305	ENSCAFG00000018247	SNRPD1	99	98.305	Canis_familiaris
ENSLAFG00000005819	SNRPD1	80	97.872	ENSCAFG00020015914	SNRPD1	73	97.872	Canis_lupus_dingo
ENSLAFG00000005819	SNRPD1	99	100.000	ENSCHIG00000005557	SNRPD1	98	100.000	Capra_hircus
ENSLAFG00000005819	SNRPD1	100	98.305	ENSTSYG00000030028	SNRPD1	99	98.305	Carlito_syrichta
ENSLAFG00000005819	SNRPD1	98	98.276	ENSCAPG00000008103	SNRPD1	100	98.276	Cavia_aperea
ENSLAFG00000005819	SNRPD1	100	98.305	ENSCPOG00000004679	SNRPD1	100	98.276	Cavia_porcellus
ENSLAFG00000005819	SNRPD1	81	93.684	ENSCCAG00000005390	-	80	93.684	Cebus_capucinus
ENSLAFG00000005819	SNRPD1	100	98.305	ENSCCAG00000032658	SNRPD1	99	98.305	Cebus_capucinus
ENSLAFG00000005819	SNRPD1	100	97.458	ENSCCAG00000020611	-	99	97.458	Cebus_capucinus
ENSLAFG00000005819	SNRPD1	94	94.595	ENSCCAG00000016652	-	93	94.595	Cebus_capucinus
ENSLAFG00000005819	SNRPD1	100	98.305	ENSCATG00000039978	SNRPD1	99	98.305	Cercocebus_atys
ENSLAFG00000005819	SNRPD1	100	98.305	ENSCLAG00000008691	SNRPD1	99	98.305	Chinchilla_lanigera
ENSLAFG00000005819	SNRPD1	100	98.305	ENSCSAG00000017654	SNRPD1	99	98.305	Chlorocebus_sabaeus
ENSLAFG00000005819	SNRPD1	100	98.305	ENSCPBG00000023143	SNRPD1	99	98.305	Chrysemys_picta_bellii
ENSLAFG00000005819	SNRPD1	72	85.882	ENSCING00000024100	-	68	85.882	Ciona_intestinalis
ENSLAFG00000005819	SNRPD1	73	83.721	ENSCSAVG00000004578	-	69	83.721	Ciona_savignyi
ENSLAFG00000005819	SNRPD1	100	98.305	ENSCGRG00001021055	-	99	98.305	Cricetulus_griseus_chok1gshd
ENSLAFG00000005819	SNRPD1	81	73.684	ENSCGRG00001009945	-	84	73.684	Cricetulus_griseus_chok1gshd
ENSLAFG00000005819	SNRPD1	100	98.305	ENSCGRG00000000490	-	99	98.305	Cricetulus_griseus_crigri
ENSLAFG00000005819	SNRPD1	81	73.684	ENSCGRG00000006224	-	84	73.684	Cricetulus_griseus_crigri
ENSLAFG00000005819	SNRPD1	80	92.553	ENSCSEG00000018141	snrpd1	80	92.632	Cynoglossus_semilaevis
ENSLAFG00000005819	SNRPD1	94	94.595	ENSCVAG00000000534	snrpd1	93	94.595	Cyprinodon_variegatus
ENSLAFG00000005819	SNRPD1	94	95.495	ENSDARG00000011648	snrpd1	95	96.667	Danio_rerio
ENSLAFG00000005819	SNRPD1	100	98.305	ENSDNOG00000040310	SNRPD1	99	98.305	Dasypus_novemcinctus
ENSLAFG00000005819	SNRPD1	100	98.305	ENSDORG00000008349	Snrpd1	99	98.305	Dipodomys_ordii
ENSLAFG00000005819	SNRPD1	79	80.645	FBgn0261933	SmD1	75	80.645	Drosophila_melanogaster
ENSLAFG00000005819	SNRPD1	75	100.000	ENSETEG00000011689	SNRPD1	74	100.000	Echinops_telfairi
ENSLAFG00000005819	SNRPD1	94	90.991	ENSEBUG00000003170	snrpd1	93	90.991	Eptatretus_burgeri
ENSLAFG00000005819	SNRPD1	95	100.000	ENSEASG00005002433	SNRPD1	100	100.000	Equus_asinus_asinus
ENSLAFG00000005819	SNRPD1	95	100.000	ENSECAG00000014373	SNRPD1	100	100.000	Equus_caballus
ENSLAFG00000005819	SNRPD1	75	100.000	ENSEEUG00000004987	SNRPD1	100	100.000	Erinaceus_europaeus
ENSLAFG00000005819	SNRPD1	93	83.636	ENSELUG00000000088	snrpd1	78	93.548	Esox_lucius
ENSLAFG00000005819	SNRPD1	100	98.305	ENSFCAG00000012352	SNRPD1	99	98.305	Felis_catus
ENSLAFG00000005819	SNRPD1	95	100.000	ENSFALG00000002646	SNRPD1	100	100.000	Ficedula_albicollis
ENSLAFG00000005819	SNRPD1	94	95.495	ENSGMOG00000015607	snrpd1	93	95.495	Gadus_morhua
ENSLAFG00000005819	SNRPD1	100	98.305	ENSGALG00000041334	SNRPD1	99	98.305	Gallus_gallus
ENSLAFG00000005819	SNRPD1	94	94.595	ENSGAFG00000011171	snrpd1	93	94.595	Gambusia_affinis
ENSLAFG00000005819	SNRPD1	94	95.495	ENSGACG00000005201	SNRPD1	93	95.495	Gasterosteus_aculeatus
ENSLAFG00000005819	SNRPD1	100	98.305	ENSGAGG00000011197	SNRPD1	99	98.305	Gopherus_agassizii
ENSLAFG00000005819	SNRPD1	81	92.632	ENSGGOG00000026706	-	79	92.632	Gorilla_gorilla
ENSLAFG00000005819	SNRPD1	100	98.305	ENSGGOG00000041053	SNRPD1	99	98.305	Gorilla_gorilla
ENSLAFG00000005819	SNRPD1	94	94.595	ENSHBUG00000003236	snrpd1	93	94.595	Haplochromis_burtoni
ENSLAFG00000005819	SNRPD1	100	98.305	ENSHGLG00000007152	SNRPD1	99	98.305	Heterocephalus_glaber_female
ENSLAFG00000005819	SNRPD1	100	98.305	ENSHGLG00100008618	SNRPD1	99	98.305	Heterocephalus_glaber_male
ENSLAFG00000005819	SNRPD1	94	94.595	ENSIPUG00000003576	snrpd1	93	94.595	Ictalurus_punctatus
ENSLAFG00000005819	SNRPD1	100	98.305	ENSSTOG00000000485	SNRPD1	99	98.305	Ictidomys_tridecemlineatus
ENSLAFG00000005819	SNRPD1	100	98.305	ENSJJAG00000017698	Snrpd1	99	98.305	Jaculus_jaculus
ENSLAFG00000005819	SNRPD1	94	94.595	ENSKMAG00000005987	snrpd1	93	94.595	Kryptolebias_marmoratus
ENSLAFG00000005819	SNRPD1	94	94.595	ENSLBEG00000003327	snrpd1	93	94.595	Labrus_bergylta
ENSLAFG00000005819	SNRPD1	100	98.305	ENSLACG00000001955	SNRPD1	99	98.305	Latimeria_chalumnae
ENSLAFG00000005819	SNRPD1	99	97.436	ENSLOCG00000002003	snrpd1	100	97.436	Lepisosteus_oculatus
ENSLAFG00000005819	SNRPD1	100	98.305	ENSMFAG00000042080	SNRPD1	99	98.305	Macaca_fascicularis
ENSLAFG00000005819	SNRPD1	99	98.291	ENSMMUG00000003992	SNRPD1	100	98.291	Macaca_mulatta
ENSLAFG00000005819	SNRPD1	100	98.305	ENSMNEG00000041296	SNRPD1	99	98.305	Macaca_nemestrina
ENSLAFG00000005819	SNRPD1	100	98.305	ENSMLEG00000028659	SNRPD1	99	98.305	Mandrillus_leucophaeus
ENSLAFG00000005819	SNRPD1	94	94.595	ENSMAMG00000012971	snrpd1	93	94.595	Mastacembelus_armatus
ENSLAFG00000005819	SNRPD1	94	94.595	ENSMZEG00005004685	snrpd1	93	94.595	Maylandia_zebra
ENSLAFG00000005819	SNRPD1	97	100.000	ENSMGAG00000011598	SNRPD1	95	100.000	Meleagris_gallopavo
ENSLAFG00000005819	SNRPD1	81	82.105	ENSMAUG00000016502	-	86	82.105	Mesocricetus_auratus
ENSLAFG00000005819	SNRPD1	81	82.105	ENSMAUG00000016467	-	86	82.105	Mesocricetus_auratus
ENSLAFG00000005819	SNRPD1	84	93.939	ENSMAUG00000006829	-	63	93.939	Mesocricetus_auratus
ENSLAFG00000005819	SNRPD1	100	98.305	ENSMICG00000044066	SNRPD1	99	98.305	Microcebus_murinus
ENSLAFG00000005819	SNRPD1	100	98.305	ENSMOCG00000017367	Snrpd1	99	98.305	Microtus_ochrogaster
ENSLAFG00000005819	SNRPD1	94	94.595	ENSMMOG00000019089	snrpd1	93	94.595	Mola_mola
ENSLAFG00000005819	SNRPD1	100	98.305	ENSMODG00000021487	SNRPD1	98	100.000	Monodelphis_domestica
ENSLAFG00000005819	SNRPD1	94	94.595	ENSMALG00000014459	snrpd1	93	94.595	Monopterus_albus
ENSLAFG00000005819	SNRPD1	100	98.305	MGP_CAROLIEiJ_G0021994	Snrpd1	99	98.305	Mus_caroli
ENSLAFG00000005819	SNRPD1	100	98.305	ENSMUSG00000002477	Snrpd1	99	98.305	Mus_musculus
ENSLAFG00000005819	SNRPD1	100	98.305	MGP_PahariEiJ_G0018731	Snrpd1	99	98.305	Mus_pahari
ENSLAFG00000005819	SNRPD1	100	98.305	MGP_SPRETEiJ_G0022910	Snrpd1	99	98.305	Mus_spretus
ENSLAFG00000005819	SNRPD1	100	97.458	ENSMPUG00000020041	-	99	97.458	Mustela_putorius_furo
ENSLAFG00000005819	SNRPD1	99	99.145	ENSMPUG00000005567	-	100	99.145	Mustela_putorius_furo
ENSLAFG00000005819	SNRPD1	98	98.276	ENSMLUG00000009124	SNRPD1	90	98.276	Myotis_lucifugus
ENSLAFG00000005819	SNRPD1	100	98.305	ENSNGAG00000023946	Snrpd1	99	98.305	Nannospalax_galili
ENSLAFG00000005819	SNRPD1	79	93.548	ENSNBRG00000012119	snrpd1	77	93.548	Neolamprologus_brichardi
ENSLAFG00000005819	SNRPD1	100	95.763	ENSNLEG00000031430	SNRPD1	99	95.763	Nomascus_leucogenys
ENSLAFG00000005819	SNRPD1	100	98.305	ENSODEG00000005764	SNRPD1	99	98.305	Octodon_degus
ENSLAFG00000005819	SNRPD1	94	94.595	ENSONIG00000002486	snrpd1	93	94.595	Oreochromis_niloticus
ENSLAFG00000005819	SNRPD1	83	88.776	ENSOANG00000004638	-	82	88.776	Ornithorhynchus_anatinus
ENSLAFG00000005819	SNRPD1	100	97.458	ENSOCUG00000014399	-	99	97.458	Oryctolagus_cuniculus
ENSLAFG00000005819	SNRPD1	99	99.145	ENSOCUG00000023761	-	100	99.145	Oryctolagus_cuniculus
ENSLAFG00000005819	SNRPD1	95	96.429	ENSORLG00000012516	snrpd1	100	96.429	Oryzias_latipes
ENSLAFG00000005819	SNRPD1	94	94.595	ENSORLG00020005743	snrpd1	93	94.595	Oryzias_latipes_hni
ENSLAFG00000005819	SNRPD1	94	94.595	ENSORLG00015013402	snrpd1	93	94.595	Oryzias_latipes_hsok
ENSLAFG00000005819	SNRPD1	94	94.595	ENSOMEG00000011571	snrpd1	93	94.595	Oryzias_melastigma
ENSLAFG00000005819	SNRPD1	99	98.291	ENSOGAG00000007833	SNRPD1	98	98.291	Otolemur_garnettii
ENSLAFG00000005819	SNRPD1	100	93.220	ENSOARG00000003413	-	84	93.220	Ovis_aries
ENSLAFG00000005819	SNRPD1	100	98.305	ENSPPAG00000042593	SNRPD1	99	98.305	Pan_paniscus
ENSLAFG00000005819	SNRPD1	100	98.305	ENSPPRG00000002399	SNRPD1	99	98.305	Panthera_pardus
ENSLAFG00000005819	SNRPD1	94	70.270	ENSPPRG00000005009	-	91	70.270	Panthera_pardus
ENSLAFG00000005819	SNRPD1	97	100.000	ENSPTIG00000013206	SNRPD1	100	100.000	Panthera_tigris_altaica
ENSLAFG00000005819	SNRPD1	100	98.305	ENSPTRG00000009909	SNRPD1	99	98.305	Pan_troglodytes
ENSLAFG00000005819	SNRPD1	86	92.079	ENSPTRG00000050159	-	86	92.079	Pan_troglodytes
ENSLAFG00000005819	SNRPD1	100	98.305	ENSPANG00000023478	SNRPD1	99	98.305	Papio_anubis
ENSLAFG00000005819	SNRPD1	89	95.238	ENSPKIG00000021610	snrpd1	94	95.238	Paramormyrops_kingsleyae
ENSLAFG00000005819	SNRPD1	94	95.495	ENSPKIG00000003985	SNRPD1	93	95.495	Paramormyrops_kingsleyae
ENSLAFG00000005819	SNRPD1	94	94.595	ENSPMGG00000001862	snrpd1	93	94.595	Periophthalmus_magnuspinnatus
ENSLAFG00000005819	SNRPD1	100	98.305	ENSPEMG00000014773	-	99	98.305	Peromyscus_maniculatus_bairdii
ENSLAFG00000005819	SNRPD1	86	81.553	ENSPMAG00000003938	-	84	81.553	Petromyzon_marinus
ENSLAFG00000005819	SNRPD1	100	98.305	ENSPCIG00000020320	SNRPD1	100	100.000	Phascolarctos_cinereus
ENSLAFG00000005819	SNRPD1	81	93.684	ENSPFOG00000012448	SNRPD1	84	93.684	Poecilia_formosa
ENSLAFG00000005819	SNRPD1	81	93.684	ENSPLAG00000006738	snrpd1	84	93.684	Poecilia_latipinna
ENSLAFG00000005819	SNRPD1	81	93.684	ENSPMEG00000021942	snrpd1	84	93.684	Poecilia_mexicana
ENSLAFG00000005819	SNRPD1	94	94.595	ENSPREG00000007094	snrpd1	93	94.595	Poecilia_reticulata
ENSLAFG00000005819	SNRPD1	100	98.305	ENSPPYG00000025874	SNRPD1	99	98.305	Pongo_abelii
ENSLAFG00000005819	SNRPD1	100	98.305	ENSPCOG00000013327	SNRPD1	99	98.305	Propithecus_coquereli
ENSLAFG00000005819	SNRPD1	100	98.305	ENSPVAG00000005511	SNRPD1	79	98.305	Pteropus_vampyrus
ENSLAFG00000005819	SNRPD1	94	94.595	ENSPNAG00000017824	snrpd1	93	94.595	Pygocentrus_nattereri
ENSLAFG00000005819	SNRPD1	100	98.305	ENSRNOG00000013714	Snrpd1	99	98.305	Rattus_norvegicus
ENSLAFG00000005819	SNRPD1	100	98.305	ENSRBIG00000022996	SNRPD1	99	98.305	Rhinopithecus_bieti
ENSLAFG00000005819	SNRPD1	100	98.305	ENSRROG00000027640	SNRPD1	99	98.305	Rhinopithecus_roxellana
ENSLAFG00000005819	SNRPD1	100	98.305	ENSSBOG00000020998	SNRPD1	99	98.305	Saimiri_boliviensis_boliviensis
ENSLAFG00000005819	SNRPD1	100	98.305	ENSSHAG00000011791	SNRPD1	99	98.305	Sarcophilus_harrisii
ENSLAFG00000005819	SNRPD1	94	93.694	ENSSFOG00015008809	-	93	93.694	Scleropages_formosus
ENSLAFG00000005819	SNRPD1	94	93.694	ENSSFOG00015022253	-	93	93.694	Scleropages_formosus
ENSLAFG00000005819	SNRPD1	94	93.694	ENSSMAG00000008765	snrpd1	94	95.238	Scophthalmus_maximus
ENSLAFG00000005819	SNRPD1	92	95.370	ENSSDUG00000010521	snrpd1	92	95.370	Seriola_dumerili
ENSLAFG00000005819	SNRPD1	94	94.595	ENSSLDG00000011858	snrpd1	93	94.595	Seriola_lalandi_dorsalis
ENSLAFG00000005819	SNRPD1	57	100.000	ENSSARG00000004271	SNRPD1	100	100.000	Sorex_araneus
ENSLAFG00000005819	SNRPD1	100	98.305	ENSSPUG00000002824	SNRPD1	99	98.305	Sphenodon_punctatus
ENSLAFG00000005819	SNRPD1	95	96.429	ENSSPAG00000015229	snrpd1	100	96.429	Stegastes_partitus
ENSLAFG00000005819	SNRPD1	100	98.305	ENSSSCG00000003701	SNRPD1	100	100.000	Sus_scrofa
ENSLAFG00000005819	SNRPD1	97	100.000	ENSTGUG00000005095	SNRPD1	97	100.000	Taeniopygia_guttata
ENSLAFG00000005819	SNRPD1	95	96.429	ENSTRUG00000008977	snrpd1	100	96.429	Takifugu_rubripes
ENSLAFG00000005819	SNRPD1	81	91.667	ENSTNIG00000001224	snrpd1	92	91.667	Tetraodon_nigroviridis
ENSLAFG00000005819	SNRPD1	75	100.000	ENSTBEG00000013776	SNRPD1	100	100.000	Tupaia_belangeri
ENSLAFG00000005819	SNRPD1	97	100.000	ENSTTRG00000002654	SNRPD1	100	100.000	Tursiops_truncatus
ENSLAFG00000005819	SNRPD1	97	100.000	ENSUAMG00000013431	SNRPD1	97	100.000	Ursus_americanus
ENSLAFG00000005819	SNRPD1	100	98.305	ENSUMAG00000019740	SNRPD1	99	98.305	Ursus_maritimus
ENSLAFG00000005819	SNRPD1	100	98.305	ENSVPAG00000010056	SNRPD1	79	98.305	Vicugna_pacos
ENSLAFG00000005819	SNRPD1	95	100.000	ENSVVUG00000004009	SNRPD1	100	100.000	Vulpes_vulpes
ENSLAFG00000005819	SNRPD1	94	96.396	ENSXETG00000027354	snrpd1	93	96.396	Xenopus_tropicalis
ENSLAFG00000005819	SNRPD1	94	94.595	ENSXCOG00000020108	snrpd1	93	94.595	Xiphophorus_couchianus
ENSLAFG00000005819	SNRPD1	94	94.595	ENSXMAG00000003368	snrpd1	93	94.595	Xiphophorus_maculatus