EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLAFG00000006241 (Gene tree)
Gene ID: -
Gene Symbol: SMG5
Alias: EST1B|KIAA1089|LPTS-RP1|LPTSRP1|RP11-54H19.7|SMG-5
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Loxodonta_africana
Status: putative
Strand: Minus strand
Length: 26021 bases
Position: chrscaffold_33:4758413-4784433
Accession: 24644
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLAFP00000005240	EST1	PF10374.9	7e-24	1	1
ENSLAFP00000005240	EST1_DNA_bind	PF10373.9	5.3e-39	1	1
ENSLAFP00000005240	PIN_4	PF13638.6	1.7e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLAFT00000006244	SMG5-201	3051	-	ENSLAFP00000005240	1016 (aa)	-	G3SXT8

Gene Model

Click here to download ENSLAFG00000006241's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLAFG00000006241's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLAFG00000006241	SMG5	100	94.587	ENSG00000198952	SMG5	100	94.587	Homo_sapiens
ENSLAFG00000006241	SMG5	99	67.359	ENSAPOG00000019690	smg5	100	66.082	Acanthochromis_polyacanthus
ENSLAFG00000006241	SMG5	98	92.641	ENSAMEG00000014458	SMG5	99	92.641	Ailuropoda_melanoleuca
ENSLAFG00000006241	SMG5	99	64.519	ENSACIG00000001353	smg5	99	64.808	Amphilophus_citrinellus
ENSLAFG00000006241	SMG5	98	65.015	ENSAOCG00000019483	smg5	92	67.638	Amphiprion_ocellaris
ENSLAFG00000006241	SMG5	98	66.567	ENSAPEG00000022949	smg5	98	66.866	Amphiprion_percula
ENSLAFG00000006241	SMG5	99	64.785	ENSATEG00000005348	smg5	99	65.863	Anabas_testudineus
ENSLAFG00000006241	SMG5	98	78.516	ENSAPLG00000010263	SMG5	99	78.125	Anas_platyrhynchos
ENSLAFG00000006241	SMG5	100	94.390	ENSANAG00000032899	SMG5	100	94.390	Aotus_nancymaae
ENSLAFG00000006241	SMG5	99	64.644	ENSACLG00000009311	smg5	99	65.029	Astatotilapia_calliptera
ENSLAFG00000006241	SMG5	99	43.504	ENSBTAG00000021747	-	98	42.940	Bos_taurus
ENSLAFG00000006241	SMG5	100	93.996	ENSBTAG00000009435	SMG5	100	93.996	Bos_taurus
ENSLAFG00000006241	SMG5	100	94.587	ENSCJAG00000005684	SMG5	100	94.587	Callithrix_jacchus
ENSLAFG00000006241	SMG5	100	93.602	ENSCAFG00000016839	SMG5	100	93.602	Canis_familiaris
ENSLAFG00000006241	SMG5	100	93.602	ENSCAFG00020006061	SMG5	100	93.602	Canis_lupus_dingo
ENSLAFG00000006241	SMG5	100	93.701	ENSCHIG00000007709	SMG5	100	93.701	Capra_hircus
ENSLAFG00000006241	SMG5	99	43.658	ENSCHIG00000006323	-	99	43.744	Capra_hircus
ENSLAFG00000006241	SMG5	100	93.314	ENSTSYG00000004099	SMG5	100	94.199	Carlito_syrichta
ENSLAFG00000006241	SMG5	98	72.060	ENSCAPG00000003631	SMG5	100	73.229	Cavia_aperea
ENSLAFG00000006241	SMG5	100	93.026	ENSCPOG00000015696	SMG5	100	92.731	Cavia_porcellus
ENSLAFG00000006241	SMG5	100	94.488	ENSCCAG00000027409	SMG5	100	94.488	Cebus_capucinus
ENSLAFG00000006241	SMG5	100	94.587	ENSCATG00000030539	SMG5	100	94.587	Cercocebus_atys
ENSLAFG00000006241	SMG5	100	93.713	ENSCLAG00000003983	SMG5	100	93.615	Chinchilla_lanigera
ENSLAFG00000006241	SMG5	100	94.488	ENSCSAG00000002120	SMG5	100	94.488	Chlorocebus_sabaeus
ENSLAFG00000006241	SMG5	54	90.876	ENSCHOG00000008741	-	57	90.876	Choloepus_hoffmanni
ENSLAFG00000006241	SMG5	94	77.259	ENSCPBG00000025848	SMG5	100	77.890	Chrysemys_picta_bellii
ENSLAFG00000006241	SMG5	94	34.646	ENSCING00000008706	-	100	34.381	Ciona_intestinalis
ENSLAFG00000006241	SMG5	100	90.354	ENSCANG00000029208	SMG5	100	90.354	Colobus_angolensis_palliatus
ENSLAFG00000006241	SMG5	100	90.079	ENSCGRG00001006336	Smg5	100	90.373	Cricetulus_griseus_chok1gshd
ENSLAFG00000006241	SMG5	98	90.937	ENSCGRG00000005111	Smg5	100	91.239	Cricetulus_griseus_crigri
ENSLAFG00000006241	SMG5	99	64.418	ENSCSEG00000014220	smg5	99	64.746	Cynoglossus_semilaevis
ENSLAFG00000006241	SMG5	100	60.485	ENSCVAG00000000529	smg5	100	60.544	Cyprinodon_variegatus
ENSLAFG00000006241	SMG5	100	90.256	ENSDNOG00000000051	SMG5	100	90.256	Dasypus_novemcinctus
ENSLAFG00000006241	SMG5	92	36.508	ENSDNOG00000039862	-	100	35.169	Dasypus_novemcinctus
ENSLAFG00000006241	SMG5	100	92.240	ENSDORG00000010382	Smg5	100	92.043	Dipodomys_ordii
ENSLAFG00000006241	SMG5	67	36.129	FBgn0019890	Smg5	62	36.129	Drosophila_melanogaster
ENSLAFG00000006241	SMG5	82	97.087	ENSETEG00000010336	SMG5	91	97.087	Echinops_telfairi
ENSLAFG00000006241	SMG5	91	46.463	ENSEBUG00000003739	smg5	99	45.645	Eptatretus_burgeri
ENSLAFG00000006241	SMG5	100	95.079	ENSEASG00005019122	SMG5	100	95.079	Equus_asinus_asinus
ENSLAFG00000006241	SMG5	100	95.079	ENSECAG00000001389	SMG5	100	95.079	Equus_caballus
ENSLAFG00000006241	SMG5	72	98.847	ENSEEUG00000012690	SMG5	74	98.847	Erinaceus_europaeus
ENSLAFG00000006241	SMG5	99	65.664	ENSELUG00000012585	smg5	99	65.567	Esox_lucius
ENSLAFG00000006241	SMG5	100	93.117	ENSFCAG00000011783	SMG5	100	93.117	Felis_catus
ENSLAFG00000006241	SMG5	58	81.773	ENSFALG00000001166	-	99	81.879	Ficedula_albicollis
ENSLAFG00000006241	SMG5	98	92.548	ENSFDAG00000017388	SMG5	100	92.548	Fukomys_damarensis
ENSLAFG00000006241	SMG5	97	61.430	ENSFHEG00000013939	smg5	100	61.577	Fundulus_heteroclitus
ENSLAFG00000006241	SMG5	99	60.730	ENSGMOG00000007310	smg5	93	74.715	Gadus_morhua
ENSLAFG00000006241	SMG5	99	77.338	ENSGALG00000029918	-	100	76.571	Gallus_gallus
ENSLAFG00000006241	SMG5	82	75.399	ENSGAFG00000021691	smg5	95	67.412	Gambusia_affinis
ENSLAFG00000006241	SMG5	99	78.756	ENSGAGG00000016131	SMG5	99	78.660	Gopherus_agassizii
ENSLAFG00000006241	SMG5	100	94.488	ENSGGOG00000010932	SMG5	100	94.488	Gorilla_gorilla
ENSLAFG00000006241	SMG5	99	64.361	ENSHBUG00000008654	smg5	99	64.745	Haplochromis_burtoni
ENSLAFG00000006241	SMG5	100	91.847	ENSHGLG00000019152	SMG5	100	92.043	Heterocephalus_glaber_female
ENSLAFG00000006241	SMG5	90	92.004	ENSHGLG00100015948	SMG5	99	92.223	Heterocephalus_glaber_male
ENSLAFG00000006241	SMG5	86	72.771	ENSHCOG00000010229	smg5	86	72.771	Hippocampus_comes
ENSLAFG00000006241	SMG5	99	61.531	ENSIPUG00000006624	Smg5	99	61.922	Ictalurus_punctatus
ENSLAFG00000006241	SMG5	100	93.996	ENSSTOG00000001780	SMG5	100	93.996	Ictidomys_tridecemlineatus
ENSLAFG00000006241	SMG5	100	91.168	ENSJJAG00000022763	Smg5	100	90.972	Jaculus_jaculus
ENSLAFG00000006241	SMG5	50	58.759	ENSKMAG00000014586	smg5	99	61.408	Kryptolebias_marmoratus
ENSLAFG00000006241	SMG5	100	65.092	ENSLBEG00000002145	smg5	100	65.188	Labrus_bergylta
ENSLAFG00000006241	SMG5	99	64.655	ENSLACG00000010521	SMG5	99	64.464	Latimeria_chalumnae
ENSLAFG00000006241	SMG5	100	94.488	ENSMFAG00000045357	SMG5	100	94.488	Macaca_fascicularis
ENSLAFG00000006241	SMG5	100	94.390	ENSMMUG00000000090	SMG5	100	94.390	Macaca_mulatta
ENSLAFG00000006241	SMG5	100	94.390	ENSMNEG00000044425	SMG5	100	94.390	Macaca_nemestrina
ENSLAFG00000006241	SMG5	100	88.235	ENSMLEG00000041192	SMG5	100	88.235	Mandrillus_leucophaeus
ENSLAFG00000006241	SMG5	99	60.823	ENSMAMG00000010683	smg5	100	60.623	Mastacembelus_armatus
ENSLAFG00000006241	SMG5	99	63.384	ENSMZEG00005015815	smg5	99	63.410	Maylandia_zebra
ENSLAFG00000006241	SMG5	63	58.877	ENSMZEG00005016543	smg5	100	58.485	Maylandia_zebra
ENSLAFG00000006241	SMG5	100	89.096	ENSMAUG00000010381	Smg5	100	89.489	Mesocricetus_auratus
ENSLAFG00000006241	SMG5	100	94.587	ENSMICG00000002257	SMG5	100	94.587	Microcebus_murinus
ENSLAFG00000006241	SMG5	100	89.608	ENSMOCG00000016590	Smg5	100	89.608	Microtus_ochrogaster
ENSLAFG00000006241	SMG5	99	58.333	ENSMMOG00000017199	smg5	99	58.940	Mola_mola
ENSLAFG00000006241	SMG5	87	87.725	ENSMODG00000016901	SMG5	98	88.176	Monodelphis_domestica
ENSLAFG00000006241	SMG5	77	37.624	ENSMODG00000010675	-	84	37.666	Monodelphis_domestica
ENSLAFG00000006241	SMG5	92	39.231	ENSMODG00000004735	-	86	40.270	Monodelphis_domestica
ENSLAFG00000006241	SMG5	92	37.468	ENSMODG00000004532	-	83	38.191	Monodelphis_domestica
ENSLAFG00000006241	SMG5	97	34.387	ENSMODG00000004511	-	99	34.158	Monodelphis_domestica
ENSLAFG00000006241	SMG5	99	59.358	ENSMALG00000010375	smg5	55	54.708	Monopterus_albus
ENSLAFG00000006241	SMG5	100	89.882	MGP_CAROLIEiJ_G0025163	Smg5	100	98.883	Mus_caroli
ENSLAFG00000006241	SMG5	100	89.980	ENSMUSG00000001415	Smg5	99	98.883	Mus_musculus
ENSLAFG00000006241	SMG5	100	89.794	MGP_PahariEiJ_G0026606	Smg5	100	98.883	Mus_pahari
ENSLAFG00000006241	SMG5	100	89.882	MGP_SPRETEiJ_G0026104	Smg5	100	98.883	Mus_spretus
ENSLAFG00000006241	SMG5	94	92.632	ENSMPUG00000004546	SMG5	100	91.579	Mustela_putorius_furo
ENSLAFG00000006241	SMG5	100	92.955	ENSMLUG00000008518	SMG5	100	92.661	Myotis_lucifugus
ENSLAFG00000006241	SMG5	100	91.839	ENSNGAG00000020706	Smg5	100	91.839	Nannospalax_galili
ENSLAFG00000006241	SMG5	96	63.249	ENSNBRG00000004332	smg5	98	62.877	Neolamprologus_brichardi
ENSLAFG00000006241	SMG5	100	94.193	ENSNLEG00000012439	SMG5	100	94.193	Nomascus_leucogenys
ENSLAFG00000006241	SMG5	100	86.234	ENSMEUG00000012834	SMG5	100	86.627	Notamacropus_eugenii
ENSLAFG00000006241	SMG5	100	92.717	ENSOPRG00000009152	SMG5	100	92.717	Ochotona_princeps
ENSLAFG00000006241	SMG5	100	93.701	ENSODEG00000012237	SMG5	100	93.701	Octodon_degus
ENSLAFG00000006241	SMG5	99	60.160	ENSONIG00000008632	smg5	99	60.963	Oreochromis_niloticus
ENSLAFG00000006241	SMG5	98	94.753	ENSOCUG00000012886	SMG5	99	94.753	Oryctolagus_cuniculus
ENSLAFG00000006241	SMG5	90	40.632	ENSOCUG00000023338	-	99	40.087	Oryctolagus_cuniculus
ENSLAFG00000006241	SMG5	100	64.334	ENSORLG00020013127	smg5	100	65.887	Oryzias_latipes_hni
ENSLAFG00000006241	SMG5	100	63.857	ENSORLG00015019014	smg5	100	65.500	Oryzias_latipes_hsok
ENSLAFG00000006241	SMG5	81	58.842	ENSOMEG00000021330	smg5	92	60.475	Oryzias_melastigma
ENSLAFG00000006241	SMG5	100	93.307	ENSOGAG00000004966	SMG5	100	93.307	Otolemur_garnettii
ENSLAFG00000006241	SMG5	99	44.248	ENSOARG00000011963	-	99	43.898	Ovis_aries
ENSLAFG00000006241	SMG5	100	93.799	ENSOARG00000005778	SMG5	100	93.799	Ovis_aries
ENSLAFG00000006241	SMG5	100	94.390	ENSPPAG00000011996	SMG5	100	94.390	Pan_paniscus
ENSLAFG00000006241	SMG5	98	93.946	ENSPPRG00000011901	SMG5	99	93.946	Panthera_pardus
ENSLAFG00000006241	SMG5	96	86.952	ENSPTIG00000007892	SMG5	96	87.747	Panthera_tigris_altaica
ENSLAFG00000006241	SMG5	100	94.587	ENSPTRG00000023925	SMG5	100	94.587	Pan_troglodytes
ENSLAFG00000006241	SMG5	100	94.587	ENSPTRG00000049282	-	100	94.587	Pan_troglodytes
ENSLAFG00000006241	SMG5	100	94.587	ENSPANG00000011201	SMG5	100	94.587	Papio_anubis
ENSLAFG00000006241	SMG5	99	64.936	ENSPKIG00000009402	smg5	99	65.686	Paramormyrops_kingsleyae
ENSLAFG00000006241	SMG5	98	79.663	ENSPSIG00000015198	SMG5	99	79.563	Pelodiscus_sinensis
ENSLAFG00000006241	SMG5	99	60.500	ENSPMGG00000010465	smg5	99	60.556	Periophthalmus_magnuspinnatus
ENSLAFG00000006241	SMG5	100	89.882	ENSPEMG00000001819	Smg5	100	90.177	Peromyscus_maniculatus_bairdii
ENSLAFG00000006241	SMG5	99	49.419	ENSPMAG00000000410	smg5	99	49.711	Petromyzon_marinus
ENSLAFG00000006241	SMG5	100	87.721	ENSPCIG00000018938	SMG5	100	88.114	Phascolarctos_cinereus
ENSLAFG00000006241	SMG5	50	60.037	ENSPFOG00000010191	smg5	99	61.704	Poecilia_formosa
ENSLAFG00000006241	SMG5	50	59.926	ENSPLAG00000009332	smg5	99	61.704	Poecilia_latipinna
ENSLAFG00000006241	SMG5	100	65.010	ENSPMEG00000014105	smg5	100	64.756	Poecilia_mexicana
ENSLAFG00000006241	SMG5	93	75.626	ENSPREG00000017713	smg5	99	61.456	Poecilia_reticulata
ENSLAFG00000006241	SMG5	100	94.685	ENSPPYG00000000723	SMG5	100	94.685	Pongo_abelii
ENSLAFG00000006241	SMG5	75	97.238	ENSPCAG00000008412	SMG5	81	97.238	Procavia_capensis
ENSLAFG00000006241	SMG5	100	94.390	ENSPCOG00000004741	SMG5	100	94.390	Propithecus_coquereli
ENSLAFG00000006241	SMG5	100	84.744	ENSPVAG00000016748	SMG5	100	84.744	Pteropus_vampyrus
ENSLAFG00000006241	SMG5	99	59.682	ENSPNYG00000013397	smg5	99	61.101	Pundamilia_nyererei
ENSLAFG00000006241	SMG5	99	62.100	ENSPNAG00000028363	smg5	99	62.044	Pygocentrus_nattereri
ENSLAFG00000006241	SMG5	100	90.373	ENSRNOG00000019590	Smg5	100	90.668	Rattus_norvegicus
ENSLAFG00000006241	SMG5	100	94.291	ENSRBIG00000027428	SMG5	100	94.291	Rhinopithecus_bieti
ENSLAFG00000006241	SMG5	100	94.193	ENSRROG00000030035	SMG5	100	94.193	Rhinopithecus_roxellana
ENSLAFG00000006241	SMG5	100	94.685	ENSSBOG00000033339	SMG5	100	94.685	Saimiri_boliviensis_boliviensis
ENSLAFG00000006241	SMG5	85	39.633	ENSSHAG00000000561	-	85	39.633	Sarcophilus_harrisii
ENSLAFG00000006241	SMG5	64	38.596	ENSSHAG00000000935	-	92	39.634	Sarcophilus_harrisii
ENSLAFG00000006241	SMG5	99	33.690	ENSSHAG00000009572	-	78	43.401	Sarcophilus_harrisii
ENSLAFG00000006241	SMG5	98	87.876	ENSSHAG00000014163	SMG5	99	88.277	Sarcophilus_harrisii
ENSLAFG00000006241	SMG5	99	65.430	ENSSFOG00015024175	smg5	99	65.818	Scleropages_formosus
ENSLAFG00000006241	SMG5	99	60.997	ENSSMAG00000013059	smg5	99	61.429	Scophthalmus_maximus
ENSLAFG00000006241	SMG5	99	60.319	ENSSDUG00000007122	smg5	99	60.585	Seriola_dumerili
ENSLAFG00000006241	SMG5	99	60.444	ENSSLDG00000011418	smg5	97	60.732	Seriola_lalandi_dorsalis
ENSLAFG00000006241	SMG5	90	79.826	ENSSARG00000012484	SMG5	100	79.280	Sorex_araneus
ENSLAFG00000006241	SMG5	94	77.710	ENSSPUG00000002260	SMG5	100	76.900	Sphenodon_punctatus
ENSLAFG00000006241	SMG5	92	76.457	ENSSPAG00000014266	smg5	98	65.366	Stegastes_partitus
ENSLAFG00000006241	SMG5	100	95.374	ENSSSCG00000006490	-	100	96.211	Sus_scrofa
ENSLAFG00000006241	SMG5	53	35.805	ENSSSCG00000037182	-	85	37.524	Sus_scrofa
ENSLAFG00000006241	SMG5	99	73.861	ENSSSCG00000039308	-	99	73.960	Sus_scrofa
ENSLAFG00000006241	SMG5	99	79.822	ENSTGUG00000003748	-	99	79.646	Taeniopygia_guttata
ENSLAFG00000006241	SMG5	100	63.593	ENSTRUG00000012580	smg5	100	63.401	Takifugu_rubripes
ENSLAFG00000006241	SMG5	100	63.645	ENSTNIG00000010303	smg5	100	64.085	Tetraodon_nigroviridis
ENSLAFG00000006241	SMG5	57	100.000	ENSTBEG00000002777	SMG5	57	100.000	Tupaia_belangeri
ENSLAFG00000006241	SMG5	100	89.764	ENSTTRG00000001401	SMG5	100	89.764	Tursiops_truncatus
ENSLAFG00000006241	SMG5	100	93.110	ENSUAMG00000013721	SMG5	100	93.110	Ursus_americanus
ENSLAFG00000006241	SMG5	98	89.357	ENSUMAG00000018041	SMG5	97	89.357	Ursus_maritimus
ENSLAFG00000006241	SMG5	98	86.176	ENSVPAG00000009446	SMG5	99	86.176	Vicugna_pacos
ENSLAFG00000006241	SMG5	100	93.602	ENSVVUG00000005887	SMG5	100	93.602	Vulpes_vulpes
ENSLAFG00000006241	SMG5	77	65.826	ENSXETG00000033791	SMG5	99	65.826	Xenopus_tropicalis
ENSLAFG00000006241	SMG5	100	65.381	ENSXMAG00000013499	smg5	100	65.125	Xiphophorus_maculatus