EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLAFG00000008186 (Gene tree)
Gene ID: -
Gene Symbol: SMG7
Alias: C1orf16|EST1C|KIAA0250|SGA56M|SMG-7
Full Name: SMG7%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Loxodonta_africana
Status: putative
Strand: Minus strand
Length: 48878 bases
Position: chrscaffold_16:16751038-16799915
Accession: 16792
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLAFP00000006868	EST1	PF10374.9	6.4e-25	1	1
ENSLAFP00000019214	EST1	PF10374.9	6.5e-25	1	1
ENSLAFP00000006868	EST1_DNA_bind	PF10373.9	6.2e-55	1	1
ENSLAFP00000019214	EST1_DNA_bind	PF10373.9	6.2e-55	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLAFT00000008186	SMG7-201	3429	-	ENSLAFP00000006868	1142 (aa)	-	G3T1D3
ENSLAFT00000029483	SMG7-202	1254	-	ENSLAFP00000025568	417 (aa)	-	G3UCL0
ENSLAFT00000029497	SMG7-203	3447	-	ENSLAFP00000019214	1149 (aa)	-	G3TUF6

Gene Model

Click here to download ENSLAFG00000008186's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLAFG00000008186's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLAFG00000008186	SMG7	100	97.389	ENSG00000116698	SMG7	100	97.619	Homo_sapiens
ENSLAFG00000008186	SMG7	83	70.958	ENSAPOG00000009611	smg7	94	71.558	Acanthochromis_polyacanthus
ENSLAFG00000008186	SMG7	96	92.926	ENSAMEG00000002357	SMG7	100	92.926	Ailuropoda_melanoleuca
ENSLAFG00000008186	SMG7	97	60.017	ENSACIG00000015152	smg7	98	66.667	Amphilophus_citrinellus
ENSLAFG00000008186	SMG7	99	64.793	ENSAOCG00000013538	smg7	99	65.318	Amphiprion_ocellaris
ENSLAFG00000008186	SMG7	99	64.657	ENSAPEG00000007851	smg7	99	65.182	Amphiprion_percula
ENSLAFG00000008186	SMG7	99	62.171	ENSATEG00000006931	smg7	99	62.747	Anabas_testudineus
ENSLAFG00000008186	SMG7	99	82.502	ENSAPLG00000015811	SMG7	99	82.333	Anas_platyrhynchos
ENSLAFG00000008186	SMG7	99	84.428	ENSACAG00000014989	SMG7	99	84.764	Anolis_carolinensis
ENSLAFG00000008186	SMG7	100	93.138	ENSANAG00000028114	SMG7	99	93.124	Aotus_nancymaae
ENSLAFG00000008186	SMG7	99	63.711	ENSACLG00000022079	smg7	99	64.735	Astatotilapia_calliptera
ENSLAFG00000008186	SMG7	99	66.835	ENSAMXG00000020809	smg7	99	67.114	Astyanax_mexicanus
ENSLAFG00000008186	SMG7	100	96.258	ENSBTAG00000008003	SMG7	98	96.258	Bos_taurus
ENSLAFG00000008186	SMG7	100	96.954	ENSCJAG00000005135	SMG7	99	96.954	Callithrix_jacchus
ENSLAFG00000008186	SMG7	100	97.128	ENSCAFG00000013276	SMG7	98	97.128	Canis_familiaris
ENSLAFG00000008186	SMG7	100	97.128	ENSCAFG00020015475	SMG7	98	97.128	Canis_lupus_dingo
ENSLAFG00000008186	SMG7	99	96.378	ENSCHIG00000018192	SMG7	99	96.378	Capra_hircus
ENSLAFG00000008186	SMG7	100	96.867	ENSTSYG00000002667	SMG7	98	96.867	Carlito_syrichta
ENSLAFG00000008186	SMG7	100	96.780	ENSCPOG00000008906	SMG7	99	96.780	Cavia_porcellus
ENSLAFG00000008186	SMG7	96	93.100	ENSCCAG00000028596	SMG7	100	93.100	Cebus_capucinus
ENSLAFG00000008186	SMG7	100	97.389	ENSCATG00000011063	SMG7	98	97.389	Cercocebus_atys
ENSLAFG00000008186	SMG7	100	96.258	ENSCLAG00000010751	SMG7	100	96.258	Chinchilla_lanigera
ENSLAFG00000008186	SMG7	100	97.215	ENSCSAG00000012654	SMG7	98	97.215	Chlorocebus_sabaeus
ENSLAFG00000008186	SMG7	92	88.634	ENSCHOG00000010522	SMG7	93	89.016	Choloepus_hoffmanni
ENSLAFG00000008186	SMG7	99	88.992	ENSCPBG00000015724	SMG7	99	88.823	Chrysemys_picta_bellii
ENSLAFG00000008186	SMG7	96	93.362	ENSCANG00000015680	SMG7	100	93.362	Colobus_angolensis_palliatus
ENSLAFG00000008186	SMG7	100	95.735	ENSCGRG00001013705	Smg7	99	95.760	Cricetulus_griseus_chok1gshd
ENSLAFG00000008186	SMG7	100	95.735	ENSCGRG00000018401	Smg7	100	95.735	Cricetulus_griseus_crigri
ENSLAFG00000008186	SMG7	95	69.000	ENSCVAG00000011842	smg7	99	68.500	Cyprinodon_variegatus
ENSLAFG00000008186	SMG7	99	66.528	ENSDARG00000060767	smg7	99	66.611	Danio_rerio
ENSLAFG00000008186	SMG7	100	96.084	ENSDORG00000007331	Smg7	100	96.084	Dipodomys_ordii
ENSLAFG00000008186	SMG7	96	96.804	ENSETEG00000002654	SMG7	99	96.804	Echinops_telfairi
ENSLAFG00000008186	SMG7	100	97.476	ENSEASG00005006524	SMG7	99	97.438	Equus_asinus_asinus
ENSLAFG00000008186	SMG7	100	97.563	ENSECAG00000004313	SMG7	99	97.527	Equus_caballus
ENSLAFG00000008186	SMG7	95	96.402	ENSEEUG00000002024	SMG7	92	96.402	Erinaceus_europaeus
ENSLAFG00000008186	SMG7	92	76.574	ENSELUG00000010293	smg7	99	65.343	Esox_lucius
ENSLAFG00000008186	SMG7	100	96.867	ENSFCAG00000010900	SMG7	99	96.977	Felis_catus
ENSLAFG00000008186	SMG7	98	82.993	ENSFALG00000003047	SMG7	100	82.794	Ficedula_albicollis
ENSLAFG00000008186	SMG7	99	96.463	ENSFDAG00000012121	SMG7	99	96.346	Fukomys_damarensis
ENSLAFG00000008186	SMG7	99	60.684	ENSFHEG00000011073	smg7	99	60.679	Fundulus_heteroclitus
ENSLAFG00000008186	SMG7	88	67.548	ENSGMOG00000004916	smg7	92	67.006	Gadus_morhua
ENSLAFG00000008186	SMG7	99	82.532	ENSGALG00000004667	SMG7	99	82.363	Gallus_gallus
ENSLAFG00000008186	SMG7	99	60.368	ENSGAFG00000019000	smg7	99	60.050	Gambusia_affinis
ENSLAFG00000008186	SMG7	97	64.123	ENSGACG00000001634	smg7	99	64.623	Gasterosteus_aculeatus
ENSLAFG00000008186	SMG7	100	97.476	ENSGGOG00000002342	SMG7	98	97.476	Gorilla_gorilla
ENSLAFG00000008186	SMG7	99	64.374	ENSHBUG00000003726	smg7	97	71.574	Haplochromis_burtoni
ENSLAFG00000008186	SMG7	98	96.346	ENSHGLG00000009353	SMG7	100	96.346	Heterocephalus_glaber_female
ENSLAFG00000008186	SMG7	99	88.428	ENSHGLG00100004878	-	99	88.428	Heterocephalus_glaber_male
ENSLAFG00000008186	SMG7	98	94.652	ENSHGLG00100009637	-	100	94.652	Heterocephalus_glaber_male
ENSLAFG00000008186	SMG7	99	67.228	ENSIPUG00000016997	smg7	99	67.565	Ictalurus_punctatus
ENSLAFG00000008186	SMG7	100	97.302	ENSSTOG00000000401	SMG7	100	97.302	Ictidomys_tridecemlineatus
ENSLAFG00000008186	SMG7	99	95.230	ENSJJAG00000012351	Smg7	99	95.230	Jaculus_jaculus
ENSLAFG00000008186	SMG7	89	69.500	ENSKMAG00000004900	smg7	97	69.500	Kryptolebias_marmoratus
ENSLAFG00000008186	SMG7	99	62.562	ENSLBEG00000002983	smg7	99	62.479	Labrus_bergylta
ENSLAFG00000008186	SMG7	99	76.649	ENSLACG00000000972	SMG7	99	76.195	Latimeria_chalumnae
ENSLAFG00000008186	SMG7	99	67.893	ENSLOCG00000002010	smg7	99	68.060	Lepisosteus_oculatus
ENSLAFG00000008186	SMG7	100	97.476	ENSMFAG00000031653	SMG7	99	97.527	Macaca_fascicularis
ENSLAFG00000008186	SMG7	100	97.389	ENSMMUG00000018458	SMG7	98	97.389	Macaca_mulatta
ENSLAFG00000008186	SMG7	96	93.450	ENSMNEG00000034798	SMG7	100	93.450	Macaca_nemestrina
ENSLAFG00000008186	SMG7	100	97.389	ENSMLEG00000037170	SMG7	98	97.389	Mandrillus_leucophaeus
ENSLAFG00000008186	SMG7	87	63.966	ENSMAMG00000018733	smg7	84	66.102	Mastacembelus_armatus
ENSLAFG00000008186	SMG7	99	64.327	ENSMZEG00005015247	smg7	99	64.735	Maylandia_zebra
ENSLAFG00000008186	SMG7	97	82.029	ENSMGAG00000001561	SMG7	98	81.857	Meleagris_gallopavo
ENSLAFG00000008186	SMG7	100	96.171	ENSMAUG00000019484	Smg7	100	96.171	Mesocricetus_auratus
ENSLAFG00000008186	SMG7	100	97.737	ENSMICG00000007145	SMG7	100	97.737	Microcebus_murinus
ENSLAFG00000008186	SMG7	100	95.648	ENSMOCG00000020748	Smg7	100	95.648	Microtus_ochrogaster
ENSLAFG00000008186	SMG7	100	59.801	ENSMMOG00000001524	smg7	99	60.417	Mola_mola
ENSLAFG00000008186	SMG7	92	85.806	ENSMODG00000007139	SMG7	99	85.806	Monodelphis_domestica
ENSLAFG00000008186	SMG7	97	67.662	ENSMALG00000000061	smg7	94	67.662	Monopterus_albus
ENSLAFG00000008186	SMG7	100	95.561	MGP_CAROLIEiJ_G0014704	Smg7	100	95.213	Mus_caroli
ENSLAFG00000008186	SMG7	100	95.474	ENSMUSG00000042772	Smg7	100	95.474	Mus_musculus
ENSLAFG00000008186	SMG7	100	95.474	MGP_PahariEiJ_G0027940	Smg7	100	95.474	Mus_pahari
ENSLAFG00000008186	SMG7	100	95.561	MGP_SPRETEiJ_G0015511	Smg7	100	95.561	Mus_spretus
ENSLAFG00000008186	SMG7	98	96.970	ENSMPUG00000011732	SMG7	97	96.970	Mustela_putorius_furo
ENSLAFG00000008186	SMG7	99	96.381	ENSMLUG00000015417	SMG7	99	96.381	Myotis_lucifugus
ENSLAFG00000008186	SMG7	100	95.648	ENSNGAG00000009836	Smg7	100	95.648	Nannospalax_galili
ENSLAFG00000008186	SMG7	98	57.322	ENSNBRG00000024343	smg7	98	69.194	Neolamprologus_brichardi
ENSLAFG00000008186	SMG7	100	97.650	ENSNLEG00000018018	SMG7	98	97.650	Nomascus_leucogenys
ENSLAFG00000008186	SMG7	77	85.856	ENSMEUG00000004681	SMG7	77	86.053	Notamacropus_eugenii
ENSLAFG00000008186	SMG7	96	84.566	ENSOPRG00000013942	SMG7	96	84.292	Ochotona_princeps
ENSLAFG00000008186	SMG7	100	96.345	ENSODEG00000010390	SMG7	100	96.345	Octodon_degus
ENSLAFG00000008186	SMG7	99	61.020	ENSONIG00000000277	smg7	99	62.106	Oreochromis_niloticus
ENSLAFG00000008186	SMG7	98	90.691	ENSOANG00000000994	SMG7	100	90.957	Ornithorhynchus_anatinus
ENSLAFG00000008186	SMG7	100	89.817	ENSOCUG00000005887	SMG7	94	89.991	Oryctolagus_cuniculus
ENSLAFG00000008186	SMG7	99	62.322	ENSORLG00000007314	smg7	72	91.026	Oryzias_latipes
ENSLAFG00000008186	SMG7	99	62.740	ENSORLG00020015779	smg7	72	91.026	Oryzias_latipes_hni
ENSLAFG00000008186	SMG7	99	64.206	ENSORLG00015012289	smg7	97	64.535	Oryzias_latipes_hsok
ENSLAFG00000008186	SMG7	99	62.333	ENSOMEG00000002328	smg7	99	62.250	Oryzias_melastigma
ENSLAFG00000008186	SMG7	96	95.982	ENSOGAG00000003107	SMG7	93	95.890	Otolemur_garnettii
ENSLAFG00000008186	SMG7	100	96.171	ENSOARG00000001352	SMG7	98	96.171	Ovis_aries
ENSLAFG00000008186	SMG7	96	93.624	ENSPPAG00000031619	SMG7	100	93.624	Pan_paniscus
ENSLAFG00000008186	SMG7	100	97.041	ENSPPRG00000011222	SMG7	98	97.041	Panthera_pardus
ENSLAFG00000008186	SMG7	97	96.137	ENSPTIG00000007242	SMG7	100	93.013	Panthera_tigris_altaica
ENSLAFG00000008186	SMG7	96	97.534	ENSPTRG00000001764	SMG7	100	93.624	Pan_troglodytes
ENSLAFG00000008186	SMG7	100	97.389	ENSPANG00000004520	SMG7	98	97.389	Papio_anubis
ENSLAFG00000008186	SMG7	99	63.882	ENSPKIG00000007242	smg7	99	68.500	Paramormyrops_kingsleyae
ENSLAFG00000008186	SMG7	99	91.887	ENSPSIG00000012201	SMG7	99	91.703	Pelodiscus_sinensis
ENSLAFG00000008186	SMG7	55	56.000	ENSPMGG00000021833	smg7	89	56.500	Periophthalmus_magnuspinnatus
ENSLAFG00000008186	SMG7	100	95.039	ENSPEMG00000011315	Smg7	100	95.039	Peromyscus_maniculatus_bairdii
ENSLAFG00000008186	SMG7	99	89.992	ENSPCIG00000003786	SMG7	99	91.414	Phascolarctos_cinereus
ENSLAFG00000008186	SMG7	99	62.781	ENSPFOG00000019219	smg7	99	63.071	Poecilia_formosa
ENSLAFG00000008186	SMG7	99	60.652	ENSPLAG00000001446	smg7	99	60.667	Poecilia_latipinna
ENSLAFG00000008186	SMG7	96	59.828	ENSPMEG00000005218	smg7	99	59.845	Poecilia_mexicana
ENSLAFG00000008186	SMG7	87	59.714	ENSPREG00000019039	smg7	92	59.735	Poecilia_reticulata
ENSLAFG00000008186	SMG7	99	89.643	ENSPPYG00000000427	SMG7	99	89.643	Pongo_abelii
ENSLAFG00000008186	SMG7	95	86.162	ENSPCAG00000008360	SMG7	94	86.162	Procavia_capensis
ENSLAFG00000008186	SMG7	100	97.737	ENSPCOG00000011996	SMG7	98	97.737	Propithecus_coquereli
ENSLAFG00000008186	SMG7	91	91.162	ENSPVAG00000000851	SMG7	89	91.250	Pteropus_vampyrus
ENSLAFG00000008186	SMG7	99	64.398	ENSPNYG00000007643	smg7	99	64.677	Pundamilia_nyererei
ENSLAFG00000008186	SMG7	99	67.113	ENSPNAG00000011374	smg7	98	69.697	Pygocentrus_nattereri
ENSLAFG00000008186	SMG7	100	95.739	ENSRNOG00000027962	Smg7	100	96.296	Rattus_norvegicus
ENSLAFG00000008186	SMG7	100	97.302	ENSRBIG00000036316	SMG7	98	97.302	Rhinopithecus_bieti
ENSLAFG00000008186	SMG7	100	97.302	ENSRROG00000035719	SMG7	99	97.350	Rhinopithecus_roxellana
ENSLAFG00000008186	SMG7	99	97.261	ENSSBOG00000023454	SMG7	99	97.261	Saimiri_boliviensis_boliviensis
ENSLAFG00000008186	SMG7	99	85.739	ENSSHAG00000013147	SMG7	99	85.411	Sarcophilus_harrisii
ENSLAFG00000008186	SMG7	91	76.842	ENSSFOG00015017252	smg7	99	76.842	Scleropages_formosus
ENSLAFG00000008186	SMG7	99	64.250	ENSSMAG00000006067	smg7	99	64.226	Scophthalmus_maximus
ENSLAFG00000008186	SMG7	95	71.389	ENSSDUG00000017543	smg7	99	62.049	Seriola_dumerili
ENSLAFG00000008186	SMG7	99	83.263	ENSSPUG00000002064	SMG7	99	83.164	Sphenodon_punctatus
ENSLAFG00000008186	SMG7	98	61.961	ENSSPAG00000008733	smg7	98	61.597	Stegastes_partitus
ENSLAFG00000008186	SMG7	100	97.128	ENSSSCG00000015558	SMG7	99	97.085	Sus_scrofa
ENSLAFG00000008186	SMG7	99	82.194	ENSTGUG00000003928	SMG7	100	82.110	Taeniopygia_guttata
ENSLAFG00000008186	SMG7	99	63.943	ENSTNIG00000002802	smg7	99	64.129	Tetraodon_nigroviridis
ENSLAFG00000008186	SMG7	77	95.339	ENSTBEG00000003220	SMG7	75	95.339	Tupaia_belangeri
ENSLAFG00000008186	SMG7	96	96.895	ENSTTRG00000014778	SMG7	94	96.895	Tursiops_truncatus
ENSLAFG00000008186	SMG7	96	92.630	ENSUAMG00000017473	SMG7	100	92.630	Ursus_americanus
ENSLAFG00000008186	SMG7	96	96.997	ENSUMAG00000016389	SMG7	100	96.997	Ursus_maritimus
ENSLAFG00000008186	SMG7	100	97.215	ENSVVUG00000008976	SMG7	99	97.173	Vulpes_vulpes
ENSLAFG00000008186	SMG7	99	66.667	ENSXETG00000012528	smg7	99	66.918	Xenopus_tropicalis
ENSLAFG00000008186	SMG7	99	60.669	ENSXMAG00000007123	smg7	99	60.837	Xiphophorus_maculatus