EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLAFG00000008531 (Gene tree)
Gene ID: -
Gene Symbol: SF3B4
Alias: Hsh49|SAP49|SF3b49
Full Name: splicing factor 3b subunit 4
Gene Type: protein_coding
Species: Loxodonta_africana
Status: putative
Strand: Plus strand
Length: 4124 bases
Position: chrscaffold_11:42387884-42392007
Accession: 10771
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLAFP00000007164	RRM_1	PF00076.22	2.7e-39	1	2
ENSLAFP00000007164	RRM_1	PF00076.22	2.7e-39	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLAFT00000008532	SF3B4-201	1278	-	ENSLAFP00000007164	425 (aa)	-	G3T204

Gene Model

Click here to download ENSLAFG00000008531's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLAFG00000008531's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLAFG00000008531	SF3B4	73	39.344	ENSLAFG00000013994	PABPC1	58	39.344
ENSLAFG00000008531	SF3B4	96	36.508	ENSLAFG00000003553	PABPC1L	58	36.508

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLAFG00000008531	SF3B4	100	99.294	ENSG00000143368	SF3B4	100	100.000	Homo_sapiens
ENSLAFG00000008531	SF3B4	56	96.667	ENSAPOG00000017647	sf3b4	77	80.495	Acanthochromis_polyacanthus
ENSLAFG00000008531	SF3B4	100	99.529	ENSAMEG00000010073	SF3B4	100	99.529	Ailuropoda_melanoleuca
ENSLAFG00000008531	SF3B4	54	96.104	ENSACIG00000018455	sf3b4	67	96.930	Amphilophus_citrinellus
ENSLAFG00000008531	SF3B4	56	96.667	ENSAOCG00000019801	sf3b4	77	80.495	Amphiprion_ocellaris
ENSLAFG00000008531	SF3B4	56	96.667	ENSAPEG00000010365	sf3b4	77	80.495	Amphiprion_percula
ENSLAFG00000008531	SF3B4	56	96.250	ENSATEG00000012844	sf3b4	76	80.062	Anabas_testudineus
ENSLAFG00000008531	SF3B4	62	96.198	ENSACAG00000010019	SF3B4	90	91.146	Anolis_carolinensis
ENSLAFG00000008531	SF3B4	100	99.294	ENSANAG00000031025	SF3B4	100	99.294	Aotus_nancymaae
ENSLAFG00000008531	SF3B4	56	95.833	ENSACLG00000014260	sf3b4	76	80.000	Astatotilapia_calliptera
ENSLAFG00000008531	SF3B4	56	96.250	ENSAMXG00000008282	sf3b4	77	79.321	Astyanax_mexicanus
ENSLAFG00000008531	SF3B4	91	96.104	ENSBTAG00000012793	-	93	96.104	Bos_taurus
ENSLAFG00000008531	SF3B4	100	99.529	ENSBTAG00000012495	SF3B4	100	99.529	Bos_taurus
ENSLAFG00000008531	SF3B4	51	81.395	WBGene00004723	sap-49	54	81.991	Caenorhabditis_elegans
ENSLAFG00000008531	SF3B4	90	81.507	ENSCJAG00000042351	SF3B4	87	81.507	Callithrix_jacchus
ENSLAFG00000008531	SF3B4	100	99.059	ENSCAFG00000011617	SF3B4	100	99.059	Canis_familiaris
ENSLAFG00000008531	SF3B4	100	99.059	ENSCAFG00020019775	SF3B4	100	99.059	Canis_lupus_dingo
ENSLAFG00000008531	SF3B4	100	99.529	ENSCHIG00000025663	-	100	99.529	Capra_hircus
ENSLAFG00000008531	SF3B4	100	99.294	ENSTSYG00000009295	SF3B4	100	99.294	Carlito_syrichta
ENSLAFG00000008531	SF3B4	100	99.294	ENSCPOG00000008267	SF3B4	100	99.294	Cavia_porcellus
ENSLAFG00000008531	SF3B4	95	85.360	ENSCCAG00000019823	-	77	86.239	Cebus_capucinus
ENSLAFG00000008531	SF3B4	100	86.797	ENSCCAG00000021751	-	69	93.231	Cebus_capucinus
ENSLAFG00000008531	SF3B4	100	99.294	ENSCATG00000033114	SF3B4	100	99.294	Cercocebus_atys
ENSLAFG00000008531	SF3B4	100	99.294	ENSCLAG00000015851	SF3B4	100	99.294	Chinchilla_lanigera
ENSLAFG00000008531	SF3B4	100	99.294	ENSCSAG00000018129	SF3B4	100	99.294	Chlorocebus_sabaeus
ENSLAFG00000008531	SF3B4	62	96.578	ENSCPBG00000008041	SF3B4	91	91.429	Chrysemys_picta_bellii
ENSLAFG00000008531	SF3B4	51	90.698	ENSCING00000002337	-	57	90.521	Ciona_intestinalis
ENSLAFG00000008531	SF3B4	100	99.294	ENSCANG00000035579	SF3B4	100	99.294	Colobus_angolensis_palliatus
ENSLAFG00000008531	SF3B4	100	99.294	ENSCGRG00001003590	Sf3b4	100	99.294	Cricetulus_griseus_chok1gshd
ENSLAFG00000008531	SF3B4	100	99.294	ENSCGRG00000016914	Sf3b4	100	99.294	Cricetulus_griseus_crigri
ENSLAFG00000008531	SF3B4	56	96.250	ENSDARG00000018574	sf3b4	77	79.876	Danio_rerio
ENSLAFG00000008531	SF3B4	98	96.643	ENSDNOG00000048908	-	99	96.643	Dasypus_novemcinctus
ENSLAFG00000008531	SF3B4	97	80.676	ENSDNOG00000037231	-	50	87.245	Dasypus_novemcinctus
ENSLAFG00000008531	SF3B4	100	99.529	ENSDORG00000016366	Sf3b4	100	99.529	Dipodomys_ordii
ENSLAFG00000008531	SF3B4	76	92.308	ENSETEG00000008963	SF3B4	76	92.308	Echinops_telfairi
ENSLAFG00000008531	SF3B4	100	99.529	ENSEASG00005001477	SF3B4	100	99.529	Equus_asinus_asinus
ENSLAFG00000008531	SF3B4	100	99.529	ENSECAG00000024737	SF3B4	100	99.529	Equus_caballus
ENSLAFG00000008531	SF3B4	100	99.529	ENSFCAG00000010106	SF3B4	100	99.529	Felis_catus
ENSLAFG00000008531	SF3B4	100	99.294	ENSFDAG00000009286	SF3B4	100	99.294	Fukomys_damarensis
ENSLAFG00000008531	SF3B4	54	96.957	ENSGMOG00000002519	sf3b4	67	97.368	Gadus_morhua
ENSLAFG00000008531	SF3B4	99	87.736	ENSGALG00000013352	SF3B4	90	90.365	Gallus_gallus
ENSLAFG00000008531	SF3B4	62	92.453	ENSGAFG00000010181	sf3b4	58	97.807	Gambusia_affinis
ENSLAFG00000008531	SF3B4	62	96.578	ENSGAGG00000025055	SF3B4	79	91.169	Gopherus_agassizii
ENSLAFG00000008531	SF3B4	100	73.176	ENSGGOG00000038845	-	54	89.524	Gorilla_gorilla
ENSLAFG00000008531	SF3B4	100	99.294	ENSGGOG00000004761	SF3B4	100	99.294	Gorilla_gorilla
ENSLAFG00000008531	SF3B4	56	95.833	ENSHBUG00000002028	sf3b4	76	80.000	Haplochromis_burtoni
ENSLAFG00000008531	SF3B4	100	99.294	ENSHGLG00000012360	SF3B4	100	99.294	Heterocephalus_glaber_female
ENSLAFG00000008531	SF3B4	100	98.118	ENSHGLG00100008533	SF3B4	100	98.118	Heterocephalus_glaber_male
ENSLAFG00000008531	SF3B4	50	99.531	ENSHCOG00000003014	sf3b4	57	96.491	Hippocampus_comes
ENSLAFG00000008531	SF3B4	56	96.667	ENSIPUG00000012242	Sf3b4	77	80.247	Ictalurus_punctatus
ENSLAFG00000008531	SF3B4	100	99.529	ENSSTOG00000000684	-	100	99.529	Ictidomys_tridecemlineatus
ENSLAFG00000008531	SF3B4	76	83.691	ENSJJAG00000022500	Sf3b4	95	83.691	Jaculus_jaculus
ENSLAFG00000008531	SF3B4	56	96.203	ENSKMAG00000008154	sf3b4	58	98.246	Kryptolebias_marmoratus
ENSLAFG00000008531	SF3B4	55	97.425	ENSLBEG00000026818	sf3b4	57	98.246	Labrus_bergylta
ENSLAFG00000008531	SF3B4	57	95.473	ENSLACG00000004436	SF3B4	87	86.875	Latimeria_chalumnae
ENSLAFG00000008531	SF3B4	57	95.885	ENSLOCG00000009048	sf3b4	75	86.562	Lepisosteus_oculatus
ENSLAFG00000008531	SF3B4	92	70.886	ENSMFAG00000039067	-	76	68.167	Macaca_fascicularis
ENSLAFG00000008531	SF3B4	100	99.294	ENSMFAG00000042395	SF3B4	100	99.294	Macaca_fascicularis
ENSLAFG00000008531	SF3B4	100	99.294	ENSMMUG00000007256	SF3B4	100	99.294	Macaca_mulatta
ENSLAFG00000008531	SF3B4	92	70.380	ENSMNEG00000031526	-	76	67.846	Macaca_nemestrina
ENSLAFG00000008531	SF3B4	100	99.294	ENSMNEG00000031839	SF3B4	100	99.294	Macaca_nemestrina
ENSLAFG00000008531	SF3B4	100	99.294	ENSMLEG00000038667	SF3B4	100	99.294	Mandrillus_leucophaeus
ENSLAFG00000008531	SF3B4	56	97.083	ENSMAMG00000014692	sf3b4	77	79.938	Mastacembelus_armatus
ENSLAFG00000008531	SF3B4	56	95.833	ENSMZEG00005026741	sf3b4	76	80.000	Maylandia_zebra
ENSLAFG00000008531	SF3B4	99	87.028	ENSMGAG00000000653	SF3B4	91	90.104	Meleagris_gallopavo
ENSLAFG00000008531	SF3B4	100	99.294	ENSMAUG00000015266	Sf3b4	100	99.294	Mesocricetus_auratus
ENSLAFG00000008531	SF3B4	100	99.529	ENSMICG00000044961	SF3B4	100	99.529	Microcebus_murinus
ENSLAFG00000008531	SF3B4	98	94.231	ENSMOCG00000014155	-	100	94.231	Microtus_ochrogaster
ENSLAFG00000008531	SF3B4	100	99.294	ENSMOCG00000013658	-	100	99.294	Microtus_ochrogaster
ENSLAFG00000008531	SF3B4	54	97.826	ENSMMOG00000018032	sf3b4	58	97.807	Mola_mola
ENSLAFG00000008531	SF3B4	100	98.824	ENSMODG00000018767	SF3B4	100	98.824	Monodelphis_domestica
ENSLAFG00000008531	SF3B4	53	97.797	ENSMALG00000006174	sf3b4	57	97.368	Monopterus_albus
ENSLAFG00000008531	SF3B4	100	99.059	MGP_CAROLIEiJ_G0025365	Sf3b4	100	99.059	Mus_caroli
ENSLAFG00000008531	SF3B4	100	99.294	ENSMUSG00000068856	Sf3b4	100	99.294	Mus_musculus
ENSLAFG00000008531	SF3B4	100	99.294	MGP_PahariEiJ_G0026809	Sf3b4	100	99.294	Mus_pahari
ENSLAFG00000008531	SF3B4	100	99.294	MGP_SPRETEiJ_G0026309	Sf3b4	100	99.294	Mus_spretus
ENSLAFG00000008531	SF3B4	100	99.529	ENSMPUG00000005563	SF3B4	100	99.529	Mustela_putorius_furo
ENSLAFG00000008531	SF3B4	100	99.294	ENSMLUG00000010789	SF3B4	100	99.294	Myotis_lucifugus
ENSLAFG00000008531	SF3B4	100	99.529	ENSNGAG00000016337	Sf3b4	100	99.529	Nannospalax_galili
ENSLAFG00000008531	SF3B4	56	96.250	ENSNBRG00000013865	sf3b4	76	80.312	Neolamprologus_brichardi
ENSLAFG00000008531	SF3B4	100	69.697	ENSNLEG00000009693	-	100	69.697	Nomascus_leucogenys
ENSLAFG00000008531	SF3B4	100	76.235	ENSNLEG00000000537	-	82	84.308	Nomascus_leucogenys
ENSLAFG00000008531	SF3B4	81	100.000	ENSMEUG00000003272	SF3B4	82	100.000	Notamacropus_eugenii
ENSLAFG00000008531	SF3B4	99	96.919	ENSOPRG00000010808	SF3B4	99	96.919	Ochotona_princeps
ENSLAFG00000008531	SF3B4	88	72.727	ENSODEG00000008916	-	55	76.415	Octodon_degus
ENSLAFG00000008531	SF3B4	75	86.478	ENSODEG00000003597	-	79	86.478	Octodon_degus
ENSLAFG00000008531	SF3B4	56	95.359	ENSONIG00000002730	sf3b4	57	97.807	Oreochromis_niloticus
ENSLAFG00000008531	SF3B4	99	57.773	ENSOANG00000004768	-	50	81.776	Ornithorhynchus_anatinus
ENSLAFG00000008531	SF3B4	100	99.529	ENSOCUG00000004614	SF3B4	100	99.529	Oryctolagus_cuniculus
ENSLAFG00000008531	SF3B4	55	96.983	ENSORLG00000003062	sf3b4	59	97.807	Oryzias_latipes
ENSLAFG00000008531	SF3B4	100	99.529	ENSOGAG00000006265	SF3B4	100	99.529	Otolemur_garnettii
ENSLAFG00000008531	SF3B4	86	78.356	ENSOARG00000007368	-	55	83.482	Ovis_aries
ENSLAFG00000008531	SF3B4	100	99.529	ENSOARG00000020718	-	100	99.529	Ovis_aries
ENSLAFG00000008531	SF3B4	100	81.412	ENSPPAG00000030024	-	78	82.154	Pan_paniscus
ENSLAFG00000008531	SF3B4	100	99.294	ENSPPAG00000040904	SF3B4	100	99.294	Pan_paniscus
ENSLAFG00000008531	SF3B4	100	99.529	ENSPPRG00000007384	SF3B4	100	99.529	Panthera_pardus
ENSLAFG00000008531	SF3B4	100	99.059	ENSPTIG00000014530	SF3B4	100	99.059	Panthera_tigris_altaica
ENSLAFG00000008531	SF3B4	100	78.588	ENSPTRG00000049727	-	78	84.615	Pan_troglodytes
ENSLAFG00000008531	SF3B4	100	99.294	ENSPTRG00000001243	SF3B4	100	99.294	Pan_troglodytes
ENSLAFG00000008531	SF3B4	100	99.294	ENSPANG00000005126	SF3B4	100	99.294	Papio_anubis
ENSLAFG00000008531	SF3B4	55	97.425	ENSPKIG00000020669	sf3b4	82	78.593	Paramormyrops_kingsleyae
ENSLAFG00000008531	SF3B4	56	87.288	ENSPSIG00000009565	SF3B4	88	74.648	Pelodiscus_sinensis
ENSLAFG00000008531	SF3B4	100	99.294	ENSPEMG00000017568	Sf3b4	100	99.294	Peromyscus_maniculatus_bairdii
ENSLAFG00000008531	SF3B4	60	88.716	ENSPMAG00000007842	-	50	95.283	Petromyzon_marinus
ENSLAFG00000008531	SF3B4	100	98.824	ENSPCIG00000008765	SF3B4	100	98.824	Phascolarctos_cinereus
ENSLAFG00000008531	SF3B4	64	90.476	ENSPFOG00000005754	sf3b4	58	97.368	Poecilia_formosa
ENSLAFG00000008531	SF3B4	64	90.476	ENSPLAG00000001401	sf3b4	63	97.368	Poecilia_latipinna
ENSLAFG00000008531	SF3B4	64	90.476	ENSPREG00000011076	sf3b4	57	97.807	Poecilia_reticulata
ENSLAFG00000008531	SF3B4	63	96.635	ENSPCAG00000000392	SF3B4	69	96.635	Procavia_capensis
ENSLAFG00000008531	SF3B4	100	99.529	ENSPCOG00000015399	SF3B4	100	99.529	Propithecus_coquereli
ENSLAFG00000008531	SF3B4	100	99.529	ENSPVAG00000014171	SF3B4	100	99.529	Pteropus_vampyrus
ENSLAFG00000008531	SF3B4	56	95.833	ENSPNYG00000012700	sf3b4	76	80.000	Pundamilia_nyererei
ENSLAFG00000008531	SF3B4	56	96.667	ENSPNAG00000000686	sf3b4	79	79.385	Pygocentrus_nattereri
ENSLAFG00000008531	SF3B4	100	99.294	ENSRNOG00000021181	Sf3b4	100	99.294	Rattus_norvegicus
ENSLAFG00000008531	SF3B4	100	99.294	ENSRBIG00000043392	SF3B4	100	99.294	Rhinopithecus_bieti
ENSLAFG00000008531	SF3B4	100	99.294	ENSRROG00000029366	SF3B4	100	99.294	Rhinopithecus_roxellana
ENSLAFG00000008531	SF3B4	92	71.282	ENSRROG00000028213	-	91	67.467	Rhinopithecus_roxellana
ENSLAFG00000008531	SF3B4	100	72.471	ENSSBOG00000025174	-	73	79.012	Saimiri_boliviensis_boliviensis
ENSLAFG00000008531	SF3B4	100	99.059	ENSSBOG00000012310	-	100	99.059	Saimiri_boliviensis_boliviensis
ENSLAFG00000008531	SF3B4	100	96.235	ENSSHAG00000004043	SF3B4	100	98.429	Sarcophilus_harrisii
ENSLAFG00000008531	SF3B4	56	96.624	ENSSFOG00015008864	sf3b4	76	79.012	Scleropages_formosus
ENSLAFG00000008531	SF3B4	56	96.667	ENSSMAG00000006837	sf3b4	77	79.876	Scophthalmus_maximus
ENSLAFG00000008531	SF3B4	56	97.083	ENSSDUG00000012064	sf3b4	76	79.938	Seriola_dumerili
ENSLAFG00000008531	SF3B4	56	97.083	ENSSLDG00000014226	sf3b4	76	79.630	Seriola_lalandi_dorsalis
ENSLAFG00000008531	SF3B4	56	97.500	ENSSPAG00000019219	sf3b4	76	80.556	Stegastes_partitus
ENSLAFG00000008531	SF3B4	85	66.391	ENSSSCG00000039440	-	79	61.846	Sus_scrofa
ENSLAFG00000008531	SF3B4	100	99.765	ENSSSCG00000006665	-	100	99.765	Sus_scrofa
ENSLAFG00000008531	SF3B4	56	97.034	ENSTGUG00000004470	SF3B4	90	98.246	Taeniopygia_guttata
ENSLAFG00000008531	SF3B4	53	96.916	ENSTRUG00000004516	sf3b4	57	96.491	Takifugu_rubripes
ENSLAFG00000008531	SF3B4	54	96.957	ENSTNIG00000009156	sf3b4	58	97.368	Tetraodon_nigroviridis
ENSLAFG00000008531	SF3B4	100	99.529	ENSTTRG00000005217	SF3B4	100	99.529	Tursiops_truncatus
ENSLAFG00000008531	SF3B4	100	99.529	ENSUAMG00000022468	SF3B4	100	99.529	Ursus_americanus
ENSLAFG00000008531	SF3B4	100	98.588	ENSUMAG00000003802	SF3B4	100	98.588	Ursus_maritimus
ENSLAFG00000008531	SF3B4	97	99.516	ENSVPAG00000008152	SF3B4	100	99.516	Vicugna_pacos
ENSLAFG00000008531	SF3B4	65	96.377	ENSVVUG00000022697	-	58	96.377	Vulpes_vulpes
ENSLAFG00000008531	SF3B4	99	92.363	ENSVVUG00000007732	-	100	92.363	Vulpes_vulpes
ENSLAFG00000008531	SF3B4	54	97.391	ENSXCOG00000019895	sf3b4	58	97.807	Xiphophorus_couchianus
ENSLAFG00000008531	SF3B4	54	97.391	ENSXMAG00000003772	sf3b4	58	97.807	Xiphophorus_maculatus