EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLAFG00000009065 (Gene tree)
Gene ID: -
Gene Symbol: R3HDM1
Alias: KIAA0029|R3HDM
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Loxodonta_africana
Status: putative
Strand: Minus strand
Length: 105120 bases
Position: chrscaffold_3:94488114-94593233
Accession: 9757
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLAFP00000028983	R3H	PF01424.22	1.5e-11	1	1
ENSLAFP00000007603	R3H	PF01424.22	1.8e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLAFT00000032999	R3HDM1-201	2973	-	ENSLAFP00000028983	990 (aa)	-	G3UMC4
ENSLAFT00000009067	R3HDM1-202	3405	-	ENSLAFP00000007603	1135 (aa)	-	G3T311

Gene Model

Click here to download ENSLAFG00000009065's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLAFG00000009065's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLAFG00000009065	R3HDM1	100	52.157	ENSLAFG00000006510	R3HDM2	93	52.405
ENSLAFG00000009065	R3HDM1	67	54.396	ENSLAFG00000005797	ARPP21	91	58.747

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLAFG00000009065	R3HDM1	100	91.109	ENSG00000048991	R3HDM1	99	93.568	Homo_sapiens
ENSLAFG00000009065	R3HDM1	86	67.139	ENSAPOG00000020850	r3hdm1	84	66.972	Acanthochromis_polyacanthus
ENSLAFG00000009065	R3HDM1	100	92.342	ENSAMEG00000014886	R3HDM1	100	92.342	Ailuropoda_melanoleuca
ENSLAFG00000009065	R3HDM1	85	67.139	ENSAOCG00000005192	r3hdm1	85	67.251	Amphiprion_ocellaris
ENSLAFG00000009065	R3HDM1	81	68.932	ENSAPEG00000016108	r3hdm1	86	68.371	Amphiprion_percula
ENSLAFG00000009065	R3HDM1	83	67.178	ENSATEG00000000232	r3hdm1	87	67.178	Anabas_testudineus
ENSLAFG00000009065	R3HDM1	100	77.221	ENSAPLG00000015231	R3HDM1	100	77.397	Anas_platyrhynchos
ENSLAFG00000009065	R3HDM1	100	79.615	ENSACAG00000001676	R3HDM1	100	80.052	Anolis_carolinensis
ENSLAFG00000009065	R3HDM1	100	91.645	ENSANAG00000035334	R3HDM1	100	91.645	Aotus_nancymaae
ENSLAFG00000009065	R3HDM1	80	48.330	ENSACLG00000027282	r3hdm1	94	48.171	Astatotilapia_calliptera
ENSLAFG00000009065	R3HDM1	99	58.702	ENSAMXG00000003536	r3hdm1	100	62.238	Astyanax_mexicanus
ENSLAFG00000009065	R3HDM1	65	39.504	ENSAMXG00000020587	arpp21	88	39.736	Astyanax_mexicanus
ENSLAFG00000009065	R3HDM1	98	77.337	ENSAMXG00000012861	R3HDM1	100	72.356	Astyanax_mexicanus
ENSLAFG00000009065	R3HDM1	100	94.366	ENSBTAG00000013302	R3HDM1	100	94.454	Bos_taurus
ENSLAFG00000009065	R3HDM1	100	91.630	ENSCJAG00000011718	R3HDM1	100	91.630	Callithrix_jacchus
ENSLAFG00000009065	R3HDM1	100	92.606	ENSCAFG00000005075	R3HDM1	100	92.606	Canis_familiaris
ENSLAFG00000009065	R3HDM1	100	95.511	ENSCAFG00020016119	R3HDM1	100	95.511	Canis_lupus_dingo
ENSLAFG00000009065	R3HDM1	100	94.190	ENSCHIG00000020851	R3HDM1	100	94.366	Capra_hircus
ENSLAFG00000009065	R3HDM1	100	92.004	ENSCPOG00000012784	R3HDM1	100	92.004	Cavia_porcellus
ENSLAFG00000009065	R3HDM1	100	91.197	ENSCCAG00000027199	R3HDM1	100	91.197	Cebus_capucinus
ENSLAFG00000009065	R3HDM1	99	97.151	ENSCATG00000023642	R3HDM1	100	93.580	Cercocebus_atys
ENSLAFG00000009065	R3HDM1	100	91.476	ENSCLAG00000007962	R3HDM1	100	91.564	Chinchilla_lanigera
ENSLAFG00000009065	R3HDM1	100	93.668	ENSCSAG00000016356	R3HDM1	100	93.492	Chlorocebus_sabaeus
ENSLAFG00000009065	R3HDM1	88	79.921	ENSCHOG00000013638	R3HDM1	91	79.396	Choloepus_hoffmanni
ENSLAFG00000009065	R3HDM1	92	79.654	ENSCPBG00000009645	R3HDM1	100	91.882	Chrysemys_picta_bellii
ENSLAFG00000009065	R3HDM1	100	91.029	ENSCANG00000034748	R3HDM1	100	90.853	Colobus_angolensis_palliatus
ENSLAFG00000009065	R3HDM1	99	91.262	ENSCGRG00001012357	R3hdm1	97	91.262	Cricetulus_griseus_chok1gshd
ENSLAFG00000009065	R3HDM1	100	91.205	ENSCGRG00000012080	R3hdm1	100	91.205	Cricetulus_griseus_crigri
ENSLAFG00000009065	R3HDM1	86	62.216	ENSCSEG00000008944	r3hdm1	90	59.322	Cynoglossus_semilaevis
ENSLAFG00000009065	R3HDM1	85	64.489	ENSCVAG00000007582	r3hdm1	86	64.308	Cyprinodon_variegatus
ENSLAFG00000009065	R3HDM1	65	36.919	ENSDARG00000061081	arpp21	88	38.018	Danio_rerio
ENSLAFG00000009065	R3HDM1	100	87.741	ENSDNOG00000000771	R3HDM1	100	87.741	Dasypus_novemcinctus
ENSLAFG00000009065	R3HDM1	88	95.758	ENSETEG00000013606	R3HDM1	100	81.162	Echinops_telfairi
ENSLAFG00000009065	R3HDM1	61	51.374	ENSEBUG00000014746	arpp21	97	42.105	Eptatretus_burgeri
ENSLAFG00000009065	R3HDM1	100	95.154	ENSEASG00005007392	R3HDM1	100	95.242	Equus_asinus_asinus
ENSLAFG00000009065	R3HDM1	100	94.978	ENSECAG00000019114	R3HDM1	100	94.978	Equus_caballus
ENSLAFG00000009065	R3HDM1	88	86.716	ENSEEUG00000012589	R3HDM1	91	85.609	Erinaceus_europaeus
ENSLAFG00000009065	R3HDM1	93	49.563	ENSELUG00000014413	r3hdm1	89	68.976	Esox_lucius
ENSLAFG00000009065	R3HDM1	87	75.072	ENSELUG00000004909	R3HDM1	99	53.993	Esox_lucius
ENSLAFG00000009065	R3HDM1	100	95.246	ENSFCAG00000027113	R3HDM1	100	95.335	Felis_catus
ENSLAFG00000009065	R3HDM1	75	75.874	ENSFALG00000013731	R3HDM1	72	75.991	Ficedula_albicollis
ENSLAFG00000009065	R3HDM1	100	91.740	ENSFDAG00000016478	R3HDM1	99	94.834	Fukomys_damarensis
ENSLAFG00000009065	R3HDM1	85	65.341	ENSFHEG00000018713	r3hdm1	86	65.732	Fundulus_heteroclitus
ENSLAFG00000009065	R3HDM1	59	69.348	ENSGMOG00000006042	-	74	69.565	Gadus_morhua
ENSLAFG00000009065	R3HDM1	95	74.679	ENSGALG00000012246	R3HDM1	99	85.574	Gallus_gallus
ENSLAFG00000009065	R3HDM1	79	47.767	ENSGAFG00000006203	r3hdm1	84	67.638	Gambusia_affinis
ENSLAFG00000009065	R3HDM1	90	66.189	ENSGACG00000014925	r3hdm1	99	49.620	Gasterosteus_aculeatus
ENSLAFG00000009065	R3HDM1	100	78.196	ENSGAGG00000007840	R3HDM1	100	77.671	Gopherus_agassizii
ENSLAFG00000009065	R3HDM1	100	90.933	ENSGGOG00000008156	R3HDM1	100	90.757	Gorilla_gorilla
ENSLAFG00000009065	R3HDM1	100	91.894	ENSHGLG00000015718	R3HDM1	99	94.649	Heterocephalus_glaber_female
ENSLAFG00000009065	R3HDM1	100	91.630	ENSHGLG00100003184	-	100	91.630	Heterocephalus_glaber_male
ENSLAFG00000009065	R3HDM1	100	67.137	ENSHGLG00100015374	-	100	67.137	Heterocephalus_glaber_male
ENSLAFG00000009065	R3HDM1	81	65.696	ENSHCOG00000013366	r3hdm1	85	66.667	Hippocampus_comes
ENSLAFG00000009065	R3HDM1	86	66.967	ENSIPUG00000013629	r3hdm1	95	68.536	Ictalurus_punctatus
ENSLAFG00000009065	R3HDM1	86	62.429	ENSIPUG00000001676	R3HDM1	99	65.789	Ictalurus_punctatus
ENSLAFG00000009065	R3HDM1	59	40.708	ENSIPUG00000020552	arpp21	84	43.934	Ictalurus_punctatus
ENSLAFG00000009065	R3HDM1	100	93.931	ENSSTOG00000007572	R3HDM1	99	96.125	Ictidomys_tridecemlineatus
ENSLAFG00000009065	R3HDM1	95	74.229	ENSLACG00000005334	R3HDM1	100	74.047	Latimeria_chalumnae
ENSLAFG00000009065	R3HDM1	99	79.552	ENSLOCG00000001641	r3hdm1	100	66.523	Lepisosteus_oculatus
ENSLAFG00000009065	R3HDM1	100	91.109	ENSMFAG00000030331	R3HDM1	100	96.305	Macaca_fascicularis
ENSLAFG00000009065	R3HDM1	100	91.021	ENSMMUG00000009844	R3HDM1	100	90.845	Macaca_mulatta
ENSLAFG00000009065	R3HDM1	100	90.933	ENSMNEG00000027793	R3HDM1	100	96.305	Macaca_nemestrina
ENSLAFG00000009065	R3HDM1	100	91.197	ENSMLEG00000043189	R3HDM1	100	91.021	Mandrillus_leucophaeus
ENSLAFG00000009065	R3HDM1	86	66.011	ENSMAMG00000004532	r3hdm1	86	66.254	Mastacembelus_armatus
ENSLAFG00000009065	R3HDM1	85	66.572	ENSMZEG00005003157	r3hdm1	99	48.141	Maylandia_zebra
ENSLAFG00000009065	R3HDM1	100	76.471	ENSMGAG00000012461	R3HDM1	100	76.471	Meleagris_gallopavo
ENSLAFG00000009065	R3HDM1	100	90.789	ENSMAUG00000010315	R3hdm1	100	90.789	Mesocricetus_auratus
ENSLAFG00000009065	R3HDM1	91	86.369	ENSMICG00000042655	-	100	85.222	Microcebus_murinus
ENSLAFG00000009065	R3HDM1	100	90.422	ENSMICG00000005900	-	100	90.422	Microcebus_murinus
ENSLAFG00000009065	R3HDM1	90	81.179	ENSMODG00000000923	R3HDM1	97	81.179	Monodelphis_domestica
ENSLAFG00000009065	R3HDM1	98	66.006	ENSMALG00000009000	r3hdm1	87	66.959	Monopterus_albus
ENSLAFG00000009065	R3HDM1	100	90.308	MGP_CAROLIEiJ_G0014543	R3hdm1	99	92.505	Mus_caroli
ENSLAFG00000009065	R3HDM1	100	90.396	ENSMUSG00000056211	R3hdm1	99	92.505	Mus_musculus
ENSLAFG00000009065	R3HDM1	100	90.132	MGP_PahariEiJ_G0027779	R3hdm1	99	92.139	Mus_pahari
ENSLAFG00000009065	R3HDM1	100	90.573	MGP_SPRETEiJ_G0015350	R3hdm1	99	92.687	Mus_spretus
ENSLAFG00000009065	R3HDM1	100	92.423	ENSMPUG00000002412	R3HDM1	100	92.423	Mustela_putorius_furo
ENSLAFG00000009065	R3HDM1	100	91.045	ENSMLUG00000013824	R3HDM1	100	91.045	Myotis_lucifugus
ENSLAFG00000009065	R3HDM1	100	90.933	ENSNLEG00000008622	R3HDM1	100	90.757	Nomascus_leucogenys
ENSLAFG00000009065	R3HDM1	89	70.542	ENSMEUG00000011784	R3HDM1	100	70.542	Notamacropus_eugenii
ENSLAFG00000009065	R3HDM1	100	90.845	ENSODEG00000008607	R3HDM1	100	90.845	Octodon_degus
ENSLAFG00000009065	R3HDM1	99	44.217	ENSONIG00000012017	r3hdm1	98	46.816	Oreochromis_niloticus
ENSLAFG00000009065	R3HDM1	100	78.878	ENSOANG00000007987	R3HDM1	100	78.966	Ornithorhynchus_anatinus
ENSLAFG00000009065	R3HDM1	90	90.265	ENSOCUG00000017366	R3HDM1	98	90.265	Oryctolagus_cuniculus
ENSLAFG00000009065	R3HDM1	85	64.773	ENSORLG00000004297	r3hdm1	99	46.060	Oryzias_latipes
ENSLAFG00000009065	R3HDM1	85	65.057	ENSORLG00015017355	r3hdm1	85	66.774	Oryzias_latipes_hsok
ENSLAFG00000009065	R3HDM1	100	90.396	ENSOGAG00000003136	R3HDM1	100	90.485	Otolemur_garnettii
ENSLAFG00000009065	R3HDM1	100	91.366	ENSOARG00000010788	R3HDM1	100	91.542	Ovis_aries
ENSLAFG00000009065	R3HDM1	100	90.949	ENSPPAG00000027858	R3HDM1	100	90.773	Pan_paniscus
ENSLAFG00000009065	R3HDM1	100	92.335	ENSPPRG00000002626	R3HDM1	100	92.423	Panthera_pardus
ENSLAFG00000009065	R3HDM1	100	92.159	ENSPTIG00000016581	R3HDM1	100	92.247	Panthera_tigris_altaica
ENSLAFG00000009065	R3HDM1	100	90.949	ENSPTRG00000012494	R3HDM1	100	90.773	Pan_troglodytes
ENSLAFG00000009065	R3HDM1	100	91.109	ENSPANG00000026448	R3HDM1	100	90.933	Papio_anubis
ENSLAFG00000009065	R3HDM1	84	76.266	ENSPKIG00000004328	r3hdm1	91	76.508	Paramormyrops_kingsleyae
ENSLAFG00000009065	R3HDM1	100	75.835	ENSPSIG00000012915	R3HDM1	100	76.011	Pelodiscus_sinensis
ENSLAFG00000009065	R3HDM1	100	91.630	ENSPEMG00000015187	R3hdm1	100	91.630	Peromyscus_maniculatus_bairdii
ENSLAFG00000009065	R3HDM1	91	59.249	ENSPMAG00000003369	-	98	38.905	Petromyzon_marinus
ENSLAFG00000009065	R3HDM1	100	84.952	ENSPCIG00000002491	R3HDM1	100	90.441	Phascolarctos_cinereus
ENSLAFG00000009065	R3HDM1	85	64.957	ENSPFOG00000015036	r3hdm1	85	64.706	Poecilia_formosa
ENSLAFG00000009065	R3HDM1	80	47.741	ENSPLAG00000018042	r3hdm1	86	64.798	Poecilia_latipinna
ENSLAFG00000009065	R3HDM1	80	47.996	ENSPMEG00000023947	r3hdm1	95	47.423	Poecilia_mexicana
ENSLAFG00000009065	R3HDM1	85	65.909	ENSPREG00000007902	r3hdm1	86	65.839	Poecilia_reticulata
ENSLAFG00000009065	R3HDM1	100	90.501	ENSPPYG00000012815	R3HDM1	100	89.798	Pongo_abelii
ENSLAFG00000009065	R3HDM1	91	95.255	ENSPCAG00000006208	R3HDM1	89	94.909	Procavia_capensis
ENSLAFG00000009065	R3HDM1	100	88.908	ENSPCOG00000012698	R3HDM1	100	88.908	Propithecus_coquereli
ENSLAFG00000009065	R3HDM1	99	89.459	ENSPVAG00000006098	R3HDM1	100	82.895	Pteropus_vampyrus
ENSLAFG00000009065	R3HDM1	89	73.333	ENSPNAG00000005436	R3HDM1	99	76.527	Pygocentrus_nattereri
ENSLAFG00000009065	R3HDM1	89	70.270	ENSPNAG00000013952	r3hdm1	100	62.911	Pygocentrus_nattereri
ENSLAFG00000009065	R3HDM1	53	58.000	ENSPNAG00000004162	arpp21	87	39.104	Pygocentrus_nattereri
ENSLAFG00000009065	R3HDM1	100	89.692	ENSRNOG00000004099	R3hdm1	100	89.692	Rattus_norvegicus
ENSLAFG00000009065	R3HDM1	100	90.598	ENSRBIG00000033317	R3HDM1	100	98.893	Rhinopithecus_bieti
ENSLAFG00000009065	R3HDM1	100	91.205	ENSRROG00000034534	R3HDM1	100	90.765	Rhinopithecus_roxellana
ENSLAFG00000009065	R3HDM1	100	91.021	ENSSBOG00000020389	R3HDM1	100	91.021	Saimiri_boliviensis_boliviensis
ENSLAFG00000009065	R3HDM1	100	82.410	ENSSHAG00000016999	R3HDM1	100	82.410	Sarcophilus_harrisii
ENSLAFG00000009065	R3HDM1	94	77.874	ENSSFOG00015014134	r3hdm1	100	71.359	Scleropages_formosus
ENSLAFG00000009065	R3HDM1	100	55.306	ENSSFOG00015019851	-	99	57.285	Scleropages_formosus
ENSLAFG00000009065	R3HDM1	99	43.594	ENSSMAG00000001669	r3hdm1	99	43.624	Scophthalmus_maximus
ENSLAFG00000009065	R3HDM1	89	45.983	ENSSDUG00000010749	r3hdm1	99	46.339	Seriola_dumerili
ENSLAFG00000009065	R3HDM1	99	46.044	ENSSLDG00000004499	r3hdm1	99	46.199	Seriola_lalandi_dorsalis
ENSLAFG00000009065	R3HDM1	72	82.041	ENSSARG00000000352	-	69	82.060	Sorex_araneus
ENSLAFG00000009065	R3HDM1	100	78.402	ENSSPUG00000004167	R3HDM1	100	78.314	Sphenodon_punctatus
ENSLAFG00000009065	R3HDM1	89	47.882	ENSSPAG00000004648	r3hdm1	99	47.801	Stegastes_partitus
ENSLAFG00000009065	R3HDM1	100	94.718	ENSSSCG00000015692	R3HDM1	100	94.718	Sus_scrofa
ENSLAFG00000009065	R3HDM1	100	71.716	ENSTGUG00000011750	R3HDM1	100	72.042	Taeniopygia_guttata
ENSLAFG00000009065	R3HDM1	81	66.881	ENSTRUG00000011654	r3hdm1	93	47.016	Takifugu_rubripes
ENSLAFG00000009065	R3HDM1	84	45.317	ENSTNIG00000010362	r3hdm1	95	45.204	Tetraodon_nigroviridis
ENSLAFG00000009065	R3HDM1	99	89.459	ENSTTRG00000003935	R3HDM1	100	85.374	Tursiops_truncatus
ENSLAFG00000009065	R3HDM1	71	91.460	ENSUAMG00000024806	R3HDM1	99	94.834	Ursus_americanus
ENSLAFG00000009065	R3HDM1	100	88.018	ENSUMAG00000005552	R3HDM1	100	88.018	Ursus_maritimus
ENSLAFG00000009065	R3HDM1	93	91.228	ENSVPAG00000007333	R3HDM1	93	91.228	Vicugna_pacos
ENSLAFG00000009065	R3HDM1	100	95.507	ENSVVUG00000006457	R3HDM1	100	95.507	Vulpes_vulpes
ENSLAFG00000009065	R3HDM1	90	65.692	ENSXETG00000019330	r3hdm1	100	64.981	Xenopus_tropicalis
ENSLAFG00000009065	R3HDM1	68	67.314	ENSXCOG00000017448	r3hdm1	82	67.314	Xiphophorus_couchianus
ENSLAFG00000009065	R3HDM1	85	65.909	ENSXMAG00000007885	r3hdm1	85	65.689	Xiphophorus_maculatus