EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLAFG00000009696 (Gene tree)
Gene ID: -
Gene Symbol: SND1
Alias: TDRD11|p100
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Loxodonta_africana
Status: putative
Strand: Plus strand
Length: 488200 bases
Position: chrscaffold_5:97339301-97827500
Accession: 100663306
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLAFP00000008133	TUDOR	PF00567.24	3.2e-28	1	1
ENSLAFP00000008133	SNase	PF00565.17	1.8e-69	1	5
ENSLAFP00000008133	SNase	PF00565.17	1.8e-69	2	5
ENSLAFP00000008133	SNase	PF00565.17	1.8e-69	3	5
ENSLAFP00000008133	SNase	PF00565.17	1.8e-69	4	5
ENSLAFP00000008133	SNase	PF00565.17	1.8e-69	5	5

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLAFT00000009697	SND1-201	2730	-	ENSLAFP00000008133	910 (aa)	XP_003407297	G3T478

Gene Model

Click here to download ENSLAFG00000009696's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLAFG00000009696's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLAFG00000009696	SND1	100	98.242	ENSG00000197157	SND1	100	98.242	Homo_sapiens
ENSLAFG00000009696	SND1	100	83.882	ENSAPOG00000017599	snd1	100	83.882	Acanthochromis_polyacanthus
ENSLAFG00000009696	SND1	100	97.807	ENSAMEG00000004664	SND1	94	97.807	Ailuropoda_melanoleuca
ENSLAFG00000009696	SND1	98	82.419	ENSACIG00000003551	snd1	100	81.449	Amphilophus_citrinellus
ENSLAFG00000009696	SND1	100	83.662	ENSAOCG00000014166	snd1	100	83.662	Amphiprion_ocellaris
ENSLAFG00000009696	SND1	100	83.662	ENSAPEG00000007067	snd1	100	83.662	Amphiprion_percula
ENSLAFG00000009696	SND1	98	83.128	ENSATEG00000018475	snd1	89	83.128	Anabas_testudineus
ENSLAFG00000009696	SND1	100	98.242	ENSANAG00000034463	SND1	100	98.242	Aotus_nancymaae
ENSLAFG00000009696	SND1	99	83.516	ENSACLG00000022897	snd1	99	83.516	Astatotilapia_calliptera
ENSLAFG00000009696	SND1	100	83.917	ENSAMXG00000016318	snd1	100	83.917	Astyanax_mexicanus
ENSLAFG00000009696	SND1	100	98.022	ENSBTAG00000010692	SND1	100	98.022	Bos_taurus
ENSLAFG00000009696	SND1	98	46.652	WBGene00006626	tsn-1	98	47.091	Caenorhabditis_elegans
ENSLAFG00000009696	SND1	100	98.022	ENSCJAG00000017668	SND1	100	98.022	Callithrix_jacchus
ENSLAFG00000009696	SND1	100	98.352	ENSCAFG00000001700	SND1	100	98.352	Canis_familiaris
ENSLAFG00000009696	SND1	100	98.352	ENSCAFG00020021639	SND1	100	98.352	Canis_lupus_dingo
ENSLAFG00000009696	SND1	100	98.132	ENSCHIG00000023390	SND1	100	98.132	Capra_hircus
ENSLAFG00000009696	SND1	73	98.415	ENSTSYG00000004979	SND1	96	98.415	Carlito_syrichta
ENSLAFG00000009696	SND1	99	84.333	ENSCAPG00000010677	SND1	98	84.333	Cavia_aperea
ENSLAFG00000009696	SND1	100	97.253	ENSCPOG00000006251	SND1	100	97.253	Cavia_porcellus
ENSLAFG00000009696	SND1	100	98.571	ENSCCAG00000036847	SND1	100	98.571	Cebus_capucinus
ENSLAFG00000009696	SND1	100	98.462	ENSCATG00000035214	SND1	100	98.462	Cercocebus_atys
ENSLAFG00000009696	SND1	100	97.253	ENSCLAG00000011796	SND1	100	97.253	Chinchilla_lanigera
ENSLAFG00000009696	SND1	100	98.462	ENSCSAG00000010182	SND1	100	98.462	Chlorocebus_sabaeus
ENSLAFG00000009696	SND1	78	89.216	ENSCHOG00000002218	SND1	86	89.216	Choloepus_hoffmanni
ENSLAFG00000009696	SND1	100	91.978	ENSCPBG00000018094	SND1	100	91.978	Chrysemys_picta_bellii
ENSLAFG00000009696	SND1	98	57.364	ENSCING00000000524	-	98	57.364	Ciona_intestinalis
ENSLAFG00000009696	SND1	99	58.306	ENSCSAVG00000008807	-	99	58.306	Ciona_savignyi
ENSLAFG00000009696	SND1	100	98.462	ENSCANG00000035119	SND1	100	98.462	Colobus_angolensis_palliatus
ENSLAFG00000009696	SND1	100	96.484	ENSCGRG00001022514	Snd1	100	96.484	Cricetulus_griseus_chok1gshd
ENSLAFG00000009696	SND1	97	96.719	ENSCGRG00000012277	Snd1	99	96.719	Cricetulus_griseus_crigri
ENSLAFG00000009696	SND1	98	84.564	ENSCSEG00000008661	snd1	99	83.297	Cynoglossus_semilaevis
ENSLAFG00000009696	SND1	99	84.505	ENSCVAG00000010316	snd1	100	84.023	Cyprinodon_variegatus
ENSLAFG00000009696	SND1	100	84.447	ENSDARG00000006766	snd1	99	85.789	Danio_rerio
ENSLAFG00000009696	SND1	97	95.603	ENSDNOG00000006795	SND1	100	95.603	Dasypus_novemcinctus
ENSLAFG00000009696	SND1	100	97.692	ENSDORG00000000336	Snd1	100	97.692	Dipodomys_ordii
ENSLAFG00000009696	SND1	98	50.486	FBgn0035121	Tudor-SN	99	50.000	Drosophila_melanogaster
ENSLAFG00000009696	SND1	90	100.000	ENSETEG00000000375	SND1	92	100.000	Echinops_telfairi
ENSLAFG00000009696	SND1	60	67.838	ENSEBUG00000014201	-	84	76.503	Eptatretus_burgeri
ENSLAFG00000009696	SND1	100	96.652	ENSEASG00005008513	SND1	100	96.652	Equus_asinus_asinus
ENSLAFG00000009696	SND1	100	98.242	ENSECAG00000011451	SND1	100	98.242	Equus_caballus
ENSLAFG00000009696	SND1	100	86.264	ENSEEUG00000014737	SND1	100	86.264	Erinaceus_europaeus
ENSLAFG00000009696	SND1	99	82.675	ENSELUG00000001805	snd1	96	82.675	Esox_lucius
ENSLAFG00000009696	SND1	100	98.242	ENSFCAG00000008289	SND1	100	98.242	Felis_catus
ENSLAFG00000009696	SND1	100	97.363	ENSFDAG00000015881	SND1	100	97.363	Fukomys_damarensis
ENSLAFG00000009696	SND1	99	82.258	ENSFHEG00000004093	snd1	99	83.982	Fundulus_heteroclitus
ENSLAFG00000009696	SND1	64	75.989	ENSGMOG00000018932	snd1	66	75.989	Gadus_morhua
ENSLAFG00000009696	SND1	100	84.430	ENSGAFG00000008421	snd1	100	84.430	Gambusia_affinis
ENSLAFG00000009696	SND1	100	54.072	ENSGACG00000019793	snd1	100	54.072	Gasterosteus_aculeatus
ENSLAFG00000009696	SND1	100	98.462	ENSGGOG00000009614	SND1	100	98.462	Gorilla_gorilla
ENSLAFG00000009696	SND1	99	83.921	ENSHBUG00000019135	snd1	99	83.921	Haplochromis_burtoni
ENSLAFG00000009696	SND1	100	97.363	ENSHGLG00000003618	SND1	100	97.363	Heterocephalus_glaber_female
ENSLAFG00000009696	SND1	99	97.127	ENSHGLG00100012449	SND1	100	97.127	Heterocephalus_glaber_male
ENSLAFG00000009696	SND1	100	83.114	ENSHCOG00000005266	snd1	100	83.114	Hippocampus_comes
ENSLAFG00000009696	SND1	100	82.932	ENSIPUG00000013279	snd1	100	82.932	Ictalurus_punctatus
ENSLAFG00000009696	SND1	100	97.692	ENSSTOG00000002140	SND1	100	97.692	Ictidomys_tridecemlineatus
ENSLAFG00000009696	SND1	100	98.132	ENSJJAG00000009561	Snd1	100	98.132	Jaculus_jaculus
ENSLAFG00000009696	SND1	100	84.211	ENSKMAG00000016997	snd1	100	84.211	Kryptolebias_marmoratus
ENSLAFG00000009696	SND1	100	85.067	ENSLBEG00000013563	snd1	100	83.004	Labrus_bergylta
ENSLAFG00000009696	SND1	99	85.557	ENSLOCG00000015537	snd1	99	84.657	Lepisosteus_oculatus
ENSLAFG00000009696	SND1	100	98.462	ENSMFAG00000038114	SND1	100	98.462	Macaca_fascicularis
ENSLAFG00000009696	SND1	100	98.462	ENSMMUG00000015432	SND1	100	98.462	Macaca_mulatta
ENSLAFG00000009696	SND1	100	98.462	ENSMNEG00000039808	SND1	100	98.644	Macaca_nemestrina
ENSLAFG00000009696	SND1	100	98.352	ENSMLEG00000029040	SND1	100	98.531	Mandrillus_leucophaeus
ENSLAFG00000009696	SND1	99	83.846	ENSMAMG00000011739	snd1	99	83.846	Mastacembelus_armatus
ENSLAFG00000009696	SND1	99	83.516	ENSMZEG00005005681	snd1	99	83.516	Maylandia_zebra
ENSLAFG00000009696	SND1	100	98.022	ENSMICG00000000097	SND1	100	98.022	Microcebus_murinus
ENSLAFG00000009696	SND1	100	97.363	ENSMOCG00000005040	Snd1	100	97.363	Microtus_ochrogaster
ENSLAFG00000009696	SND1	100	83.662	ENSMMOG00000001795	snd1	100	83.662	Mola_mola
ENSLAFG00000009696	SND1	99	95.652	ENSMODG00000015182	SND1	100	95.495	Monodelphis_domestica
ENSLAFG00000009696	SND1	100	83.333	ENSMALG00000012071	snd1	100	83.333	Monopterus_albus
ENSLAFG00000009696	SND1	100	96.923	MGP_CAROLIEiJ_G0028159	Snd1	100	96.923	Mus_caroli
ENSLAFG00000009696	SND1	100	96.703	ENSMUSG00000001424	Snd1	100	96.703	Mus_musculus
ENSLAFG00000009696	SND1	100	96.923	MGP_PahariEiJ_G0021917	Snd1	100	97.470	Mus_pahari
ENSLAFG00000009696	SND1	100	96.923	MGP_SPRETEiJ_G0029159	Snd1	100	96.923	Mus_spretus
ENSLAFG00000009696	SND1	100	97.582	ENSMPUG00000006545	SND1	100	97.582	Mustela_putorius_furo
ENSLAFG00000009696	SND1	97	96.760	ENSMLUG00000017130	SND1	99	96.760	Myotis_lucifugus
ENSLAFG00000009696	SND1	100	97.253	ENSNGAG00000011186	Snd1	100	97.253	Nannospalax_galili
ENSLAFG00000009696	SND1	99	83.407	ENSNBRG00000006681	snd1	99	83.407	Neolamprologus_brichardi
ENSLAFG00000009696	SND1	100	98.352	ENSNLEG00000012263	SND1	100	98.644	Nomascus_leucogenys
ENSLAFG00000009696	SND1	91	100.000	ENSOPRG00000013405	SND1	92	100.000	Ochotona_princeps
ENSLAFG00000009696	SND1	100	97.363	ENSODEG00000011502	SND1	100	97.363	Octodon_degus
ENSLAFG00000009696	SND1	99	83.407	ENSONIG00000011481	snd1	97	83.407	Oreochromis_niloticus
ENSLAFG00000009696	SND1	98	94.257	ENSOANG00000000817	SND1	99	93.466	Ornithorhynchus_anatinus
ENSLAFG00000009696	SND1	100	96.703	ENSOCUG00000001620	SND1	100	96.703	Oryctolagus_cuniculus
ENSLAFG00000009696	SND1	98	84.246	ENSORLG00000015201	snd1	99	83.077	Oryzias_latipes
ENSLAFG00000009696	SND1	98	84.358	ENSORLG00020013991	snd1	99	83.187	Oryzias_latipes_hni
ENSLAFG00000009696	SND1	98	84.358	ENSORLG00015012436	snd1	99	83.187	Oryzias_latipes_hsok
ENSLAFG00000009696	SND1	100	83.333	ENSOMEG00000006406	snd1	99	83.333	Oryzias_melastigma
ENSLAFG00000009696	SND1	100	98.026	ENSOGAG00000013356	SND1	94	98.026	Otolemur_garnettii
ENSLAFG00000009696	SND1	97	95.480	ENSOARG00000002149	SND1	100	95.480	Ovis_aries
ENSLAFG00000009696	SND1	100	98.352	ENSPPAG00000042947	SND1	100	98.352	Pan_paniscus
ENSLAFG00000009696	SND1	100	98.242	ENSPPRG00000004494	SND1	100	98.242	Panthera_pardus
ENSLAFG00000009696	SND1	100	98.132	ENSPTIG00000014214	SND1	100	98.132	Panthera_tigris_altaica
ENSLAFG00000009696	SND1	100	98.352	ENSPTRG00000023911	SND1	100	98.352	Pan_troglodytes
ENSLAFG00000009696	SND1	97	98.643	ENSPANG00000011997	SND1	99	98.643	Papio_anubis
ENSLAFG00000009696	SND1	99	81.477	ENSPKIG00000023494	snd1	100	80.631	Paramormyrops_kingsleyae
ENSLAFG00000009696	SND1	92	83.353	ENSPMGG00000003629	snd1	100	83.353	Periophthalmus_magnuspinnatus
ENSLAFG00000009696	SND1	100	97.253	ENSPEMG00000010240	Snd1	100	97.253	Peromyscus_maniculatus_bairdii
ENSLAFG00000009696	SND1	97	74.011	ENSPMAG00000007915	-	99	74.011	Petromyzon_marinus
ENSLAFG00000009696	SND1	99	95.987	ENSPCIG00000011561	SND1	100	95.824	Phascolarctos_cinereus
ENSLAFG00000009696	SND1	100	83.882	ENSPFOG00000001557	snd1	100	83.882	Poecilia_formosa
ENSLAFG00000009696	SND1	100	83.882	ENSPLAG00000018459	snd1	97	83.882	Poecilia_latipinna
ENSLAFG00000009696	SND1	100	84.320	ENSPMEG00000006803	snd1	100	84.320	Poecilia_mexicana
ENSLAFG00000009696	SND1	100	84.211	ENSPREG00000002189	snd1	100	84.211	Poecilia_reticulata
ENSLAFG00000009696	SND1	93	98.139	ENSPPYG00000017972	SND1	100	98.139	Pongo_abelii
ENSLAFG00000009696	SND1	100	86.374	ENSPCAG00000011305	SND1	100	86.374	Procavia_capensis
ENSLAFG00000009696	SND1	100	98.242	ENSPCOG00000026791	SND1	100	98.418	Propithecus_coquereli
ENSLAFG00000009696	SND1	100	96.264	ENSPVAG00000013945	SND1	100	96.264	Pteropus_vampyrus
ENSLAFG00000009696	SND1	99	83.516	ENSPNYG00000000932	snd1	99	83.516	Pundamilia_nyererei
ENSLAFG00000009696	SND1	100	83.807	ENSPNAG00000001206	snd1	100	83.807	Pygocentrus_nattereri
ENSLAFG00000009696	SND1	99	96.586	ENSRNOG00000031173	Snd1	100	95.593	Rattus_norvegicus
ENSLAFG00000009696	SND1	73	98.496	ENSRBIG00000027782	-	93	98.669	Rhinopithecus_bieti
ENSLAFG00000009696	SND1	100	98.462	ENSRROG00000033020	SND1	100	98.462	Rhinopithecus_roxellana
ENSLAFG00000009696	SND1	100	98.242	ENSSBOG00000032461	SND1	100	98.242	Saimiri_boliviensis_boliviensis
ENSLAFG00000009696	SND1	98	92.793	ENSSHAG00000015359	SND1	100	92.793	Sarcophilus_harrisii
ENSLAFG00000009696	SND1	100	81.937	ENSSFOG00015001103	snd1	100	81.937	Scleropages_formosus
ENSLAFG00000009696	SND1	98	84.228	ENSSMAG00000001932	snd1	94	83.077	Scophthalmus_maximus
ENSLAFG00000009696	SND1	100	83.882	ENSSDUG00000002699	snd1	94	83.882	Seriola_dumerili
ENSLAFG00000009696	SND1	100	76.645	ENSSLDG00000001950	snd1	100	76.645	Seriola_lalandi_dorsalis
ENSLAFG00000009696	SND1	86	97.170	ENSSARG00000004877	SND1	92	97.170	Sorex_araneus
ENSLAFG00000009696	SND1	73	87.826	ENSSPUG00000017586	SND1	96	87.826	Sphenodon_punctatus
ENSLAFG00000009696	SND1	73	84.772	ENSSPAG00000021398	snd1	97	85.495	Stegastes_partitus
ENSLAFG00000009696	SND1	100	98.132	ENSSSCG00000016590	SND1	100	98.132	Sus_scrofa
ENSLAFG00000009696	SND1	99	83.040	ENSTRUG00000014067	snd1	99	83.040	Takifugu_rubripes
ENSLAFG00000009696	SND1	99	83.590	ENSTNIG00000011019	snd1	97	86.172	Tetraodon_nigroviridis
ENSLAFG00000009696	SND1	93	92.335	ENSTBEG00000003999	SND1	100	92.335	Tupaia_belangeri
ENSLAFG00000009696	SND1	100	93.516	ENSTTRG00000006059	SND1	100	93.516	Tursiops_truncatus
ENSLAFG00000009696	SND1	71	88.312	ENSUAMG00000002820	-	90	88.312	Ursus_americanus
ENSLAFG00000009696	SND1	91	99.049	ENSUAMG00000005604	-	93	99.049	Ursus_americanus
ENSLAFG00000009696	SND1	100	98.242	ENSUMAG00000005960	SND1	100	98.242	Ursus_maritimus
ENSLAFG00000009696	SND1	77	100.000	ENSVPAG00000008302	SND1	74	100.000	Vicugna_pacos
ENSLAFG00000009696	SND1	100	98.132	ENSVVUG00000007226	SND1	100	98.132	Vulpes_vulpes
ENSLAFG00000009696	SND1	97	84.859	ENSXETG00000023043	snd1	100	84.783	Xenopus_tropicalis
ENSLAFG00000009696	SND1	92	81.710	ENSXCOG00000013629	snd1	99	81.710	Xiphophorus_couchianus
ENSLAFG00000009696	SND1	100	84.430	ENSXMAG00000011469	snd1	100	84.430	Xiphophorus_maculatus