EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLAFG00000010968 (Gene tree)
Gene ID: -
Gene Symbol: PSPC1
Alias: FLJ10955|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Loxodonta_africana
Status: putative
Strand: Minus strand
Length: 70216 bases
Position: chrscaffold_29:2599655-2669870
Accession: 100675021
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLAFP00000009174	RRM_1	PF00076.22	2.4e-32	1	2
ENSLAFP00000009174	RRM_1	PF00076.22	2.4e-32	2	2
ENSLAFP00000023426	RRM_1	PF00076.22	2.4e-32	1	2
ENSLAFP00000023426	RRM_1	PF00076.22	2.4e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLAFT00000033247	PSPC1-201	1572	-	ENSLAFP00000023426	523 (aa)	-	G3U6G8
ENSLAFT00000010968	PSPC1-202	1566	-	ENSLAFP00000009174	522 (aa)	XP_003414013	G3T6L2

Gene Model

Click here to download ENSLAFG00000010968's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLAFG00000010968's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLAFG00000010968	PSPC1	89	58.723	ENSLAFG00000015951	SFPQ	59	66.755
ENSLAFG00000010968	PSPC1	89	60.390	ENSLAFG00000013422	NONO	80	69.613

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLAFG00000010968	PSPC1	100	97.132	ENSG00000121390	PSPC1	100	97.132	Homo_sapiens
ENSLAFG00000010968	PSPC1	91	69.512	ENSAPOG00000015946	pspc1	81	72.360	Acanthochromis_polyacanthus
ENSLAFG00000010968	PSPC1	100	96.941	ENSAMEG00000017420	PSPC1	100	96.941	Ailuropoda_melanoleuca
ENSLAFG00000010968	PSPC1	88	61.996	ENSACIG00000018695	pspc1	78	62.295	Amphilophus_citrinellus
ENSLAFG00000010968	PSPC1	91	68.421	ENSAOCG00000005279	pspc1	81	71.910	Amphiprion_ocellaris
ENSLAFG00000010968	PSPC1	91	69.485	ENSAPEG00000015927	pspc1	82	71.910	Amphiprion_percula
ENSLAFG00000010968	PSPC1	88	58.386	ENSATEG00000004878	pspc1	86	58.887	Anabas_testudineus
ENSLAFG00000010968	PSPC1	77	93.812	ENSAPLG00000006246	PSPC1	100	93.812	Anas_platyrhynchos
ENSLAFG00000010968	PSPC1	89	60.944	ENSAPLG00000003643	SFPQ	69	69.126	Anas_platyrhynchos
ENSLAFG00000010968	PSPC1	89	54.936	ENSACAG00000013307	-	56	64.917	Anolis_carolinensis
ENSLAFG00000010968	PSPC1	99	84.381	ENSACAG00000002093	PSPC1	99	83.992	Anolis_carolinensis
ENSLAFG00000010968	PSPC1	100	97.132	ENSANAG00000000059	PSPC1	100	97.132	Aotus_nancymaae
ENSLAFG00000010968	PSPC1	99	57.463	ENSACLG00000027220	pspc1	87	58.887	Astatotilapia_calliptera
ENSLAFG00000010968	PSPC1	99	65.201	ENSAMXG00000036881	pspc1	82	72.160	Astyanax_mexicanus
ENSLAFG00000010968	PSPC1	100	95.985	ENSBTAG00000003934	PSPC1	100	95.029	Bos_taurus
ENSLAFG00000010968	PSPC1	100	97.132	ENSCJAG00000004554	PSPC1	100	97.132	Callithrix_jacchus
ENSLAFG00000010968	PSPC1	100	96.941	ENSCAFG00020002009	PSPC1	100	96.941	Canis_lupus_dingo
ENSLAFG00000010968	PSPC1	100	95.985	ENSCHIG00000016708	PSPC1	100	95.029	Capra_hircus
ENSLAFG00000010968	PSPC1	80	88.389	ENSTSYG00000032882	PSPC1	93	87.234	Carlito_syrichta
ENSLAFG00000010968	PSPC1	100	96.176	ENSCPOG00000000395	PSPC1	100	95.793	Cavia_porcellus
ENSLAFG00000010968	PSPC1	100	97.132	ENSCCAG00000033498	PSPC1	100	97.132	Cebus_capucinus
ENSLAFG00000010968	PSPC1	100	96.941	ENSCATG00000036434	PSPC1	100	96.941	Cercocebus_atys
ENSLAFG00000010968	PSPC1	88	88.121	ENSCLAG00000005241	PSPC1	99	88.121	Chinchilla_lanigera
ENSLAFG00000010968	PSPC1	100	91.587	ENSCHOG00000008913	PSPC1	100	91.396	Choloepus_hoffmanni
ENSLAFG00000010968	PSPC1	99	87.311	ENSCPBG00000020859	PSPC1	99	86.742	Chrysemys_picta_bellii
ENSLAFG00000010968	PSPC1	63	55.723	ENSCSAVG00000003533	-	53	61.786	Ciona_savignyi
ENSLAFG00000010968	PSPC1	78	85.679	ENSCANG00000018948	PSPC1	87	100.000	Colobus_angolensis_palliatus
ENSLAFG00000010968	PSPC1	100	95.785	ENSCGRG00001018368	Pspc1	100	95.785	Cricetulus_griseus_chok1gshd
ENSLAFG00000010968	PSPC1	100	95.785	ENSCGRG00000011724	Pspc1	100	95.785	Cricetulus_griseus_crigri
ENSLAFG00000010968	PSPC1	92	64.476	ENSCVAG00000007679	-	86	65.443	Cyprinodon_variegatus
ENSLAFG00000010968	PSPC1	99	65.794	ENSDARG00000006621	pspc1	89	71.429	Danio_rerio
ENSLAFG00000010968	PSPC1	100	96.941	ENSDNOG00000011078	PSPC1	100	96.941	Dasypus_novemcinctus
ENSLAFG00000010968	PSPC1	100	93.499	ENSDORG00000016050	Pspc1	100	93.499	Dipodomys_ordii
ENSLAFG00000010968	PSPC1	55	100.000	ENSETEG00000000502	-	72	100.000	Echinops_telfairi
ENSLAFG00000010968	PSPC1	88	59.298	ENSEBUG00000003964	-	62	72.254	Eptatretus_burgeri
ENSLAFG00000010968	PSPC1	59	46.386	ENSEBUG00000010133	pspc1	80	48.039	Eptatretus_burgeri
ENSLAFG00000010968	PSPC1	100	96.935	ENSEASG00005000119	PSPC1	100	96.935	Equus_asinus_asinus
ENSLAFG00000010968	PSPC1	100	96.935	ENSECAG00000017286	PSPC1	100	96.935	Equus_caballus
ENSLAFG00000010968	PSPC1	73	93.443	ENSEEUG00000011288	-	87	80.997	Erinaceus_europaeus
ENSLAFG00000010968	PSPC1	99	65.683	ENSELUG00000003746	pspc1	94	72.308	Esox_lucius
ENSLAFG00000010968	PSPC1	100	96.941	ENSFCAG00000027841	PSPC1	100	96.941	Felis_catus
ENSLAFG00000010968	PSPC1	89	94.861	ENSFALG00000008750	PSPC1	99	87.763	Ficedula_albicollis
ENSLAFG00000010968	PSPC1	100	94.828	ENSFDAG00000002617	PSPC1	100	94.828	Fukomys_damarensis
ENSLAFG00000010968	PSPC1	88	66.953	ENSGMOG00000015074	pspc1	86	66.091	Gadus_morhua
ENSLAFG00000010968	PSPC1	88	95.238	ENSGALG00000017142	PSPC1	99	88.054	Gallus_gallus
ENSLAFG00000010968	PSPC1	66	74.499	ENSGAFG00000006327	pspc1	72	74.499	Gambusia_affinis
ENSLAFG00000010968	PSPC1	88	65.948	ENSGACG00000014901	pspc1	92	73.414	Gasterosteus_aculeatus
ENSLAFG00000010968	PSPC1	89	60.300	ENSGAGG00000017325	-	56	68.306	Gopherus_agassizii
ENSLAFG00000010968	PSPC1	99	87.121	ENSGAGG00000019164	PSPC1	99	88.031	Gopherus_agassizii
ENSLAFG00000010968	PSPC1	100	96.941	ENSGGOG00000003414	PSPC1	100	96.941	Gorilla_gorilla
ENSLAFG00000010968	PSPC1	99	64.981	ENSHBUG00000001139	pspc1	100	64.419	Haplochromis_burtoni
ENSLAFG00000010968	PSPC1	100	96.367	ENSHGLG00000018811	PSPC1	100	95.602	Heterocephalus_glaber_female
ENSLAFG00000010968	PSPC1	67	92.550	ENSHGLG00100007962	PSPC1	100	92.550	Heterocephalus_glaber_male
ENSLAFG00000010968	PSPC1	80	66.114	ENSHCOG00000013251	pspc1	83	70.053	Hippocampus_comes
ENSLAFG00000010968	PSPC1	91	73.045	ENSIPUG00000013192	pspc1	90	72.634	Ictalurus_punctatus
ENSLAFG00000010968	PSPC1	100	96.941	ENSSTOG00000026833	PSPC1	100	96.941	Ictidomys_tridecemlineatus
ENSLAFG00000010968	PSPC1	100	96.743	ENSJJAG00000018334	Pspc1	100	96.743	Jaculus_jaculus
ENSLAFG00000010968	PSPC1	88	55.724	ENSKMAG00000013525	-	69	67.667	Kryptolebias_marmoratus
ENSLAFG00000010968	PSPC1	90	66.802	ENSLBEG00000004474	pspc1	75	74.302	Labrus_bergylta
ENSLAFG00000010968	PSPC1	99	76.067	ENSLACG00000010762	PSPC1	99	76.822	Latimeria_chalumnae
ENSLAFG00000010968	PSPC1	88	84.382	ENSLOCG00000010832	pspc1	99	77.159	Lepisosteus_oculatus
ENSLAFG00000010968	PSPC1	100	96.941	ENSMFAG00000032728	PSPC1	100	96.941	Macaca_fascicularis
ENSLAFG00000010968	PSPC1	100	96.941	ENSMMUG00000020262	PSPC1	100	96.941	Macaca_mulatta
ENSLAFG00000010968	PSPC1	100	96.941	ENSMNEG00000027401	PSPC1	100	96.941	Macaca_nemestrina
ENSLAFG00000010968	PSPC1	100	99.248	ENSMLEG00000039043	PSPC1	100	99.248	Mandrillus_leucophaeus
ENSLAFG00000010968	PSPC1	90	66.532	ENSMAMG00000004333	pspc1	79	70.748	Mastacembelus_armatus
ENSLAFG00000010968	PSPC1	99	57.463	ENSMZEG00005005726	pspc1	87	58.887	Maylandia_zebra
ENSLAFG00000010968	PSPC1	78	93.596	ENSMGAG00000015134	PSPC1	100	93.596	Meleagris_gallopavo
ENSLAFG00000010968	PSPC1	88	90.239	ENSMAUG00000021067	Pspc1	99	90.239	Mesocricetus_auratus
ENSLAFG00000010968	PSPC1	100	96.935	ENSMICG00000013970	PSPC1	100	96.935	Microcebus_murinus
ENSLAFG00000010968	PSPC1	100	95.977	ENSMOCG00000006060	Pspc1	100	95.977	Microtus_ochrogaster
ENSLAFG00000010968	PSPC1	91	43.249	ENSMMOG00000004352	pspc1	61	51.462	Mola_mola
ENSLAFG00000010968	PSPC1	95	93.952	ENSMODG00000008029	PSPC1	78	95.670	Monodelphis_domestica
ENSLAFG00000010968	PSPC1	88	69.742	ENSMALG00000008914	pspc1	82	70.159	Monopterus_albus
ENSLAFG00000010968	PSPC1	100	95.793	MGP_CAROLIEiJ_G0019341	Pspc1	100	95.793	Mus_caroli
ENSLAFG00000010968	PSPC1	100	95.985	ENSMUSG00000021938	Pspc1	100	95.985	Mus_musculus
ENSLAFG00000010968	PSPC1	100	95.793	MGP_PahariEiJ_G0030359	Pspc1	100	95.793	Mus_pahari
ENSLAFG00000010968	PSPC1	100	96.176	MGP_SPRETEiJ_G0020232	Pspc1	100	96.176	Mus_spretus
ENSLAFG00000010968	PSPC1	100	96.941	ENSMPUG00000013347	PSPC1	100	96.941	Mustela_putorius_furo
ENSLAFG00000010968	PSPC1	100	95.437	ENSMLUG00000017663	PSPC1	100	95.437	Myotis_lucifugus
ENSLAFG00000010968	PSPC1	100	95.977	ENSNGAG00000011271	Pspc1	100	95.977	Nannospalax_galili
ENSLAFG00000010968	PSPC1	74	65.051	ENSNBRG00000014059	pspc1	92	62.121	Neolamprologus_brichardi
ENSLAFG00000010968	PSPC1	100	96.941	ENSNLEG00000001294	PSPC1	100	96.941	Nomascus_leucogenys
ENSLAFG00000010968	PSPC1	84	94.141	ENSMEUG00000000476	PSPC1	84	94.141	Notamacropus_eugenii
ENSLAFG00000010968	PSPC1	100	83.969	ENSODEG00000019012	-	100	85.255	Octodon_degus
ENSLAFG00000010968	PSPC1	100	85.086	ENSODEG00000007817	-	100	80.907	Octodon_degus
ENSLAFG00000010968	PSPC1	99	64.981	ENSONIG00000012010	pspc1	92	66.265	Oreochromis_niloticus
ENSLAFG00000010968	PSPC1	99	66.348	ENSOANG00000011381	-	99	64.054	Ornithorhynchus_anatinus
ENSLAFG00000010968	PSPC1	76	97.744	ENSOANG00000009017	-	100	97.744	Ornithorhynchus_anatinus
ENSLAFG00000010968	PSPC1	100	97.132	ENSOCUG00000006153	PSPC1	100	97.132	Oryctolagus_cuniculus
ENSLAFG00000010968	PSPC1	88	69.742	ENSORLG00000004232	-	87	64.596	Oryzias_latipes
ENSLAFG00000010968	PSPC1	90	68.632	ENSORLG00020000578	PSPC1	90	64.242	Oryzias_latipes_hni
ENSLAFG00000010968	PSPC1	88	70.172	ENSORLG00015017480	pspc1	87	64.803	Oryzias_latipes_hsok
ENSLAFG00000010968	PSPC1	100	97.706	ENSOGAG00000012643	PSPC1	100	97.706	Otolemur_garnettii
ENSLAFG00000010968	PSPC1	100	91.221	ENSOARG00000014163	PSPC1	100	91.221	Ovis_aries
ENSLAFG00000010968	PSPC1	89	92.489	ENSPPAG00000009836	PSPC1	93	99.695	Pan_paniscus
ENSLAFG00000010968	PSPC1	100	96.941	ENSPPRG00000008833	PSPC1	100	96.941	Panthera_pardus
ENSLAFG00000010968	PSPC1	100	82.950	ENSPTIG00000016917	PSPC1	100	82.950	Panthera_tigris_altaica
ENSLAFG00000010968	PSPC1	93	97.119	ENSPTRG00000005677	PSPC1	99	97.119	Pan_troglodytes
ENSLAFG00000010968	PSPC1	100	97.132	ENSPANG00000001992	PSPC1	100	97.132	Papio_anubis
ENSLAFG00000010968	PSPC1	82	78.322	ENSPKIG00000003578	pspc1	81	77.778	Paramormyrops_kingsleyae
ENSLAFG00000010968	PSPC1	99	86.742	ENSPSIG00000005168	PSPC1	99	87.669	Pelodiscus_sinensis
ENSLAFG00000010968	PSPC1	55	73.702	ENSPMGG00000015135	pspc1	80	73.611	Periophthalmus_magnuspinnatus
ENSLAFG00000010968	PSPC1	100	96.360	ENSPEMG00000015214	Pspc1	100	96.360	Peromyscus_maniculatus_bairdii
ENSLAFG00000010968	PSPC1	99	95.977	ENSPCIG00000017680	PSPC1	100	95.977	Phascolarctos_cinereus
ENSLAFG00000010968	PSPC1	92	67.611	ENSPFOG00000003362	pspc1	93	66.599	Poecilia_formosa
ENSLAFG00000010968	PSPC1	92	67.611	ENSPLAG00000011540	pspc1	92	66.599	Poecilia_latipinna
ENSLAFG00000010968	PSPC1	68	64.903	ENSPLAG00000004407	-	52	63.215	Poecilia_latipinna
ENSLAFG00000010968	PSPC1	92	67.206	ENSPMEG00000008322	pspc1	92	66.194	Poecilia_mexicana
ENSLAFG00000010968	PSPC1	70	64.324	ENSPMEG00000001025	-	53	62.698	Poecilia_mexicana
ENSLAFG00000010968	PSPC1	92	67.206	ENSPREG00000007786	pspc1	92	66.194	Poecilia_reticulata
ENSLAFG00000010968	PSPC1	100	96.935	ENSPPYG00000005186	PSPC1	100	96.935	Pongo_abelii
ENSLAFG00000010968	PSPC1	66	100.000	ENSPCAG00000008314	-	66	100.000	Procavia_capensis
ENSLAFG00000010968	PSPC1	100	92.925	ENSPCOG00000014364	PSPC1	100	92.925	Propithecus_coquereli
ENSLAFG00000010968	PSPC1	100	92.912	ENSPVAG00000005036	PSPC1	100	93.678	Pteropus_vampyrus
ENSLAFG00000010968	PSPC1	99	57.649	ENSPNYG00000008893	pspc1	100	54.953	Pundamilia_nyererei
ENSLAFG00000010968	PSPC1	99	67.603	ENSPNAG00000016511	pspc1	89	72.611	Pygocentrus_nattereri
ENSLAFG00000010968	PSPC1	100	95.977	ENSRNOG00000020782	Pspc1	100	95.977	Rattus_norvegicus
ENSLAFG00000010968	PSPC1	93	97.947	ENSRBIG00000036057	PSPC1	100	97.947	Rhinopithecus_bieti
ENSLAFG00000010968	PSPC1	100	97.132	ENSRROG00000036334	PSPC1	100	97.132	Rhinopithecus_roxellana
ENSLAFG00000010968	PSPC1	79	88.620	ENSSBOG00000028172	PSPC1	90	95.290	Saimiri_boliviensis_boliviensis
ENSLAFG00000010968	PSPC1	100	90.667	ENSSHAG00000004696	PSPC1	100	90.667	Sarcophilus_harrisii
ENSLAFG00000010968	PSPC1	82	79.391	ENSSFOG00015001395	pspc1	90	78.605	Scleropages_formosus
ENSLAFG00000010968	PSPC1	96	63.830	ENSSMAG00000001761	pspc1	85	75.072	Scophthalmus_maximus
ENSLAFG00000010968	PSPC1	88	69.168	ENSSDUG00000010651	pspc1	76	74.419	Seriola_dumerili
ENSLAFG00000010968	PSPC1	88	64.719	ENSSLDG00000004284	pspc1	81	62.269	Seriola_lalandi_dorsalis
ENSLAFG00000010968	PSPC1	100	88.506	ENSSARG00000000888	PSPC1	100	88.506	Sorex_araneus
ENSLAFG00000010968	PSPC1	89	53.571	ENSSPUG00000001136	-	55	61.081	Sphenodon_punctatus
ENSLAFG00000010968	PSPC1	99	75.048	ENSSPUG00000008550	PSPC1	99	75.240	Sphenodon_punctatus
ENSLAFG00000010968	PSPC1	88	69.072	ENSSPAG00000001921	pspc1	82	70.419	Stegastes_partitus
ENSLAFG00000010968	PSPC1	100	95.594	ENSSSCG00000009569	PSPC1	100	95.019	Sus_scrofa
ENSLAFG00000010968	PSPC1	89	94.861	ENSTGUG00000011295	PSPC1	100	94.861	Taeniopygia_guttata
ENSLAFG00000010968	PSPC1	88	63.270	ENSTRUG00000011335	pspc1	77	66.180	Takifugu_rubripes
ENSLAFG00000010968	PSPC1	88	65.236	ENSTNIG00000010358	pspc1	88	65.000	Tetraodon_nigroviridis
ENSLAFG00000010968	PSPC1	100	75.479	ENSTBEG00000002361	PSPC1	100	74.904	Tupaia_belangeri
ENSLAFG00000010968	PSPC1	100	95.785	ENSTTRG00000003343	PSPC1	100	95.019	Tursiops_truncatus
ENSLAFG00000010968	PSPC1	67	96.011	ENSUAMG00000012309	PSPC1	99	95.714	Ursus_americanus
ENSLAFG00000010968	PSPC1	93	97.536	ENSUMAG00000013993	PSPC1	100	97.536	Ursus_maritimus
ENSLAFG00000010968	PSPC1	76	98.997	ENSVPAG00000010029	PSPC1	100	98.997	Vicugna_pacos
ENSLAFG00000010968	PSPC1	100	96.941	ENSVVUG00000006414	PSPC1	100	96.941	Vulpes_vulpes
ENSLAFG00000010968	PSPC1	66	73.639	ENSXCOG00000017438	pspc1	83	73.639	Xiphophorus_couchianus
ENSLAFG00000010968	PSPC1	66	73.926	ENSXMAG00000007929	pspc1	83	73.926	Xiphophorus_maculatus