EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLAFG00000011122 (Gene tree)
Gene ID: -
Gene Symbol: TNRC6C
Alias: FLJ20015|KIAA1582
Full Name: trinucleotide repeat containing 6C
Gene Type: protein_coding
Species: Loxodonta_africana
Status: putative
Strand: Minus strand
Length: 92453 bases
Position: chrscaffold_49:4741697-4834149
Accession: 29318
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLAFP00000009312	Ago_hook	PF10427.9	4.7e-22	1	1
ENSLAFP00000026454	Ago_hook	PF10427.9	7.5e-20	1	1
ENSLAFP00000026454	RRM_1	PF00076.22	0.00012	1	1
ENSLAFP00000009312	RRM_1	PF00076.22	0.00013	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLAFT00000011128	TNRC6C-202	5634	-	ENSLAFP00000009312	1878 (aa)	-	G3T6X4
ENSLAFT00000030474	TNRC6C-201	5256	-	ENSLAFP00000026454	1751 (aa)	-	G3UF46

Gene Model

Click here to download ENSLAFG00000011122's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLAFG00000011122's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLAFG00000011122	TNRC6C	99	43.675	ENSLAFG00000004209	TNRC6A	100	39.990
ENSLAFG00000011122	TNRC6C	77	38.221	ENSLAFG00000014473	TNRC6B	96	41.355

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLAFG00000011122	TNRC6C	99	89.224	ENSG00000078687	TNRC6C	100	90.813	Homo_sapiens
ENSLAFG00000011122	TNRC6C	76	53.211	ENSAPOG00000019749	tnrc6c1	98	49.919	Acanthochromis_polyacanthus
ENSLAFG00000011122	TNRC6C	99	87.507	ENSAMEG00000013756	TNRC6C	100	87.674	Ailuropoda_melanoleuca
ENSLAFG00000011122	TNRC6C	99	46.883	ENSACIG00000008075	tnrc6c1	79	52.814	Amphilophus_citrinellus
ENSLAFG00000011122	TNRC6C	68	68.000	ENSAOCG00000023968	tnrc6c1	99	49.473	Amphiprion_ocellaris
ENSLAFG00000011122	TNRC6C	76	53.531	ENSAPEG00000009020	tnrc6c1	99	49.629	Amphiprion_percula
ENSLAFG00000011122	TNRC6C	99	84.275	ENSAPLG00000005456	TNRC6C	100	83.929	Anas_platyrhynchos
ENSLAFG00000011122	TNRC6C	99	84.431	ENSACAG00000016198	TNRC6C	99	83.738	Anolis_carolinensis
ENSLAFG00000011122	TNRC6C	99	88.594	ENSANAG00000021554	TNRC6C	100	90.395	Aotus_nancymaae
ENSLAFG00000011122	TNRC6C	99	45.822	ENSACLG00000000424	tnrc6c1	99	50.574	Astatotilapia_calliptera
ENSLAFG00000011122	TNRC6C	100	86.279	ENSBTAG00000018658	TNRC6C	100	88.378	Bos_taurus
ENSLAFG00000011122	TNRC6C	99	88.802	ENSCJAG00000019431	TNRC6C	100	90.395	Callithrix_jacchus
ENSLAFG00000011122	TNRC6C	99	88.953	ENSCAFG00000005224	TNRC6C	99	89.126	Canis_familiaris
ENSLAFG00000011122	TNRC6C	99	91.253	ENSCAFG00020006661	TNRC6C	99	91.253	Canis_lupus_dingo
ENSLAFG00000011122	TNRC6C	99	87.300	ENSCHIG00000026004	TNRC6C	100	87.131	Capra_hircus
ENSLAFG00000011122	TNRC6C	96	87.199	ENSTSYG00000005403	TNRC6C	100	89.607	Carlito_syrichta
ENSLAFG00000011122	TNRC6C	99	84.188	ENSCAPG00000007307	TNRC6C	99	84.537	Cavia_aperea
ENSLAFG00000011122	TNRC6C	99	88.085	ENSCPOG00000000467	TNRC6C	100	88.812	Cavia_porcellus
ENSLAFG00000011122	TNRC6C	99	89.115	ENSCCAG00000030524	TNRC6C	100	90.807	Cebus_capucinus
ENSLAFG00000011122	TNRC6C	99	88.854	ENSCATG00000033135	TNRC6C	100	90.689	Cercocebus_atys
ENSLAFG00000011122	TNRC6C	99	90.489	ENSCLAG00000011139	TNRC6C	99	90.441	Chinchilla_lanigera
ENSLAFG00000011122	TNRC6C	99	88.646	ENSCSAG00000005167	TNRC6C	99	88.976	Chlorocebus_sabaeus
ENSLAFG00000011122	TNRC6C	75	88.235	ENSCHOG00000000088	TNRC6C	75	88.854	Choloepus_hoffmanni
ENSLAFG00000011122	TNRC6C	96	85.680	ENSCPBG00000027960	TNRC6C	100	87.773	Chrysemys_picta_bellii
ENSLAFG00000011122	TNRC6C	99	88.750	ENSCANG00000041771	TNRC6C	100	90.513	Colobus_angolensis_palliatus
ENSLAFG00000011122	TNRC6C	99	88.410	ENSCGRG00001022686	Tnrc6c	100	88.371	Cricetulus_griseus_chok1gshd
ENSLAFG00000011122	TNRC6C	100	88.163	ENSCGRG00000018041	Tnrc6c	100	88.371	Cricetulus_griseus_crigri
ENSLAFG00000011122	TNRC6C	76	52.490	ENSCSEG00000012744	tnrc6c1	98	45.875	Cynoglossus_semilaevis
ENSLAFG00000011122	TNRC6C	99	51.268	ENSDARG00000076847	tnrc6c1	99	52.724	Danio_rerio
ENSLAFG00000011122	TNRC6C	99	88.122	ENSDNOG00000003247	TNRC6C	99	86.383	Dasypus_novemcinctus
ENSLAFG00000011122	TNRC6C	99	85.059	ENSDORG00000004558	Tnrc6c	100	86.178	Dipodomys_ordii
ENSLAFG00000011122	TNRC6C	83	83.550	ENSETEG00000005527	TNRC6C	90	83.636	Echinops_telfairi
ENSLAFG00000011122	TNRC6C	90	90.071	ENSEASG00005004799	TNRC6C	100	90.248	Equus_asinus_asinus
ENSLAFG00000011122	TNRC6C	99	89.755	ENSECAG00000012486	TNRC6C	99	89.915	Equus_caballus
ENSLAFG00000011122	TNRC6C	95	90.017	ENSEEUG00000010008	TNRC6C	96	90.017	Erinaceus_europaeus
ENSLAFG00000011122	TNRC6C	99	86.413	ENSFCAG00000028358	TNRC6C	100	88.693	Felis_catus
ENSLAFG00000011122	TNRC6C	96	82.520	ENSFALG00000000848	TNRC6C	100	83.918	Ficedula_albicollis
ENSLAFG00000011122	TNRC6C	93	89.558	ENSFDAG00000010368	TNRC6C	100	90.361	Fukomys_damarensis
ENSLAFG00000011122	TNRC6C	95	65.785	ENSFHEG00000002936	tnrc6c1	99	48.162	Fundulus_heteroclitus
ENSLAFG00000011122	TNRC6C	99	83.582	ENSGALG00000001725	TNRC6C	100	87.751	Gallus_gallus
ENSLAFG00000011122	TNRC6C	100	46.696	ENSGAFG00000019019	tnrc6c1	99	47.349	Gambusia_affinis
ENSLAFG00000011122	TNRC6C	74	50.563	ENSGACG00000012320	tnrc6c1	99	47.614	Gasterosteus_aculeatus
ENSLAFG00000011122	TNRC6C	99	82.802	ENSGAGG00000022043	TNRC6C	99	87.006	Gopherus_agassizii
ENSLAFG00000011122	TNRC6C	99	88.704	ENSGGOG00000011304	TNRC6C	100	90.224	Gorilla_gorilla
ENSLAFG00000011122	TNRC6C	98	60.753	ENSHBUG00000010846	tnrc6c1	89	61.075	Haplochromis_burtoni
ENSLAFG00000011122	TNRC6C	99	89.846	ENSHGLG00000004809	TNRC6C	99	89.809	Heterocephalus_glaber_female
ENSLAFG00000011122	TNRC6C	99	89.527	ENSHGLG00100012597	TNRC6C	99	89.862	Heterocephalus_glaber_male
ENSLAFG00000011122	TNRC6C	99	51.556	ENSIPUG00000000818	tnrc6c1	100	51.251	Ictalurus_punctatus
ENSLAFG00000011122	TNRC6C	99	88.417	ENSSTOG00000009101	TNRC6C	100	88.711	Ictidomys_tridecemlineatus
ENSLAFG00000011122	TNRC6C	99	87.361	ENSJJAG00000017055	Tnrc6c	99	86.585	Jaculus_jaculus
ENSLAFG00000011122	TNRC6C	98	49.000	ENSKMAG00000021023	tnrc6c1	97	50.711	Kryptolebias_marmoratus
ENSLAFG00000011122	TNRC6C	99	69.329	ENSLACG00000015283	TNRC6C	100	75.356	Latimeria_chalumnae
ENSLAFG00000011122	TNRC6C	98	69.108	ENSLOCG00000013377	tnrc6c1	93	68.176	Lepisosteus_oculatus
ENSLAFG00000011122	TNRC6C	99	88.935	ENSMFAG00000043943	TNRC6C	100	90.807	Macaca_fascicularis
ENSLAFG00000011122	TNRC6C	99	88.762	ENSMMUG00000011924	TNRC6C	100	90.807	Macaca_mulatta
ENSLAFG00000011122	TNRC6C	99	88.958	ENSMNEG00000030405	TNRC6C	100	90.748	Macaca_nemestrina
ENSLAFG00000011122	TNRC6C	99	88.958	ENSMLEG00000033436	TNRC6C	100	90.748	Mandrillus_leucophaeus
ENSLAFG00000011122	TNRC6C	84	54.046	ENSMAMG00000023613	tnrc6c1	97	51.134	Mastacembelus_armatus
ENSLAFG00000011122	TNRC6C	98	63.412	ENSMZEG00005010920	tnrc6c1	89	63.305	Maylandia_zebra
ENSLAFG00000011122	TNRC6C	99	78.605	ENSMGAG00000003906	TNRC6C	100	78.553	Meleagris_gallopavo
ENSLAFG00000011122	TNRC6C	90	88.253	ENSMAUG00000021618	Tnrc6c	100	88.371	Mesocricetus_auratus
ENSLAFG00000011122	TNRC6C	99	89.526	ENSMICG00000003952	TNRC6C	100	90.979	Microcebus_murinus
ENSLAFG00000011122	TNRC6C	99	89.421	ENSMOCG00000015879	Tnrc6c	100	89.564	Microtus_ochrogaster
ENSLAFG00000011122	TNRC6C	75	53.896	ENSMMOG00000005203	tnrc6c1	100	48.681	Mola_mola
ENSLAFG00000011122	TNRC6C	99	86.352	ENSMODG00000001785	TNRC6C	99	85.684	Monodelphis_domestica
ENSLAFG00000011122	TNRC6C	99	89.102	MGP_CAROLIEiJ_G0017465	Tnrc6c	100	89.335	Mus_caroli
ENSLAFG00000011122	TNRC6C	99	88.729	ENSMUSG00000025571	Tnrc6c	100	88.991	Mus_musculus
ENSLAFG00000011122	TNRC6C	99	89.102	MGP_PahariEiJ_G0018593	Tnrc6c	100	89.335	Mus_pahari
ENSLAFG00000011122	TNRC6C	99	88.783	MGP_SPRETEiJ_G0018309	Tnrc6c	100	89.048	Mus_spretus
ENSLAFG00000011122	TNRC6C	99	85.618	ENSMPUG00000013348	TNRC6C	98	86.354	Mustela_putorius_furo
ENSLAFG00000011122	TNRC6C	99	81.169	ENSMLUG00000014431	TNRC6C	98	81.799	Myotis_lucifugus
ENSLAFG00000011122	TNRC6C	99	89.255	ENSNGAG00000012203	Tnrc6c	99	89.379	Nannospalax_galili
ENSLAFG00000011122	TNRC6C	98	61.373	ENSNBRG00000005344	tnrc6c1	99	51.298	Neolamprologus_brichardi
ENSLAFG00000011122	TNRC6C	99	86.827	ENSNLEG00000000047	TNRC6C	99	87.036	Nomascus_leucogenys
ENSLAFG00000011122	TNRC6C	96	77.037	ENSMEUG00000005104	TNRC6C	99	89.583	Notamacropus_eugenii
ENSLAFG00000011122	TNRC6C	90	90.077	ENSODEG00000012499	TNRC6C	100	90.608	Octodon_degus
ENSLAFG00000011122	TNRC6C	88	61.588	ENSONIG00000002210	tnrc6c1	96	53.483	Oreochromis_niloticus
ENSLAFG00000011122	TNRC6C	99	81.159	ENSOANG00000009758	-	94	81.159	Ornithorhynchus_anatinus
ENSLAFG00000011122	TNRC6C	83	85.192	ENSOCUG00000006122	TNRC6C	87	66.428	Oryctolagus_cuniculus
ENSLAFG00000011122	TNRC6C	99	45.979	ENSORLG00000009837	tnrc6c1	100	67.658	Oryzias_latipes
ENSLAFG00000011122	TNRC6C	99	46.854	ENSORLG00020016510	tnrc6c1	99	47.046	Oryzias_latipes_hni
ENSLAFG00000011122	TNRC6C	79	41.989	ENSORLG00015000171	tnrc6c1	97	42.249	Oryzias_latipes_hsok
ENSLAFG00000011122	TNRC6C	99	47.808	ENSOMEG00000000357	tnrc6c1	99	47.762	Oryzias_melastigma
ENSLAFG00000011122	TNRC6C	96	85.247	ENSOGAG00000007197	TNRC6C	100	87.644	Otolemur_garnettii
ENSLAFG00000011122	TNRC6C	96	83.080	ENSOARG00000006041	TNRC6C	98	83.216	Ovis_aries
ENSLAFG00000011122	TNRC6C	99	89.034	ENSPPAG00000027160	TNRC6C	100	90.748	Pan_paniscus
ENSLAFG00000011122	TNRC6C	99	86.413	ENSPPRG00000018881	TNRC6C	100	88.693	Panthera_pardus
ENSLAFG00000011122	TNRC6C	90	83.828	ENSPTIG00000008791	TNRC6C	91	84.085	Panthera_tigris_altaica
ENSLAFG00000011122	TNRC6C	99	89.115	ENSPTRG00000009699	TNRC6C	100	90.748	Pan_troglodytes
ENSLAFG00000011122	TNRC6C	99	89.010	ENSPANG00000019994	TNRC6C	100	90.968	Papio_anubis
ENSLAFG00000011122	TNRC6C	83	62.053	ENSPKIG00000005428	tnrc6c1	100	50.636	Paramormyrops_kingsleyae
ENSLAFG00000011122	TNRC6C	93	85.493	ENSPSIG00000018069	TNRC6C	100	85.665	Pelodiscus_sinensis
ENSLAFG00000011122	TNRC6C	60	73.973	ENSPMGG00000022911	tnrc6c1	98	74.118	Periophthalmus_magnuspinnatus
ENSLAFG00000011122	TNRC6C	99	89.155	ENSPEMG00000009785	Tnrc6c	99	89.384	Peromyscus_maniculatus_bairdii
ENSLAFG00000011122	TNRC6C	55	81.994	ENSPCIG00000017421	-	99	85.802	Phascolarctos_cinereus
ENSLAFG00000011122	TNRC6C	99	47.446	ENSPFOG00000012560	tnrc6c1	97	57.739	Poecilia_formosa
ENSLAFG00000011122	TNRC6C	96	49.773	ENSPLAG00000021055	tnrc6c1	97	50.409	Poecilia_latipinna
ENSLAFG00000011122	TNRC6C	99	89.178	ENSPPYG00000008679	TNRC6C	98	89.496	Pongo_abelii
ENSLAFG00000011122	TNRC6C	87	94.787	ENSPCAG00000012510	TNRC6C	90	94.787	Procavia_capensis
ENSLAFG00000011122	TNRC6C	96	87.206	ENSPCOG00000021451	TNRC6C	100	91.397	Propithecus_coquereli
ENSLAFG00000011122	TNRC6C	94	92.373	ENSPVAG00000002008	TNRC6C	95	92.373	Pteropus_vampyrus
ENSLAFG00000011122	TNRC6C	98	63.412	ENSPNYG00000014477	tnrc6c1	99	50.203	Pundamilia_nyererei
ENSLAFG00000011122	TNRC6C	96	82.751	ENSRNOG00000022395	Tnrc6c	100	89.151	Rattus_norvegicus
ENSLAFG00000011122	TNRC6C	99	88.773	ENSRBIG00000027777	TNRC6C	100	90.572	Rhinopithecus_bieti
ENSLAFG00000011122	TNRC6C	99	88.802	ENSRROG00000042912	TNRC6C	100	90.572	Rhinopithecus_roxellana
ENSLAFG00000011122	TNRC6C	99	88.604	ENSSBOG00000023981	TNRC6C	100	88.171	Saimiri_boliviensis_boliviensis
ENSLAFG00000011122	TNRC6C	51	83.316	ENSSHAG00000018330	-	100	84.640	Sarcophilus_harrisii
ENSLAFG00000011122	TNRC6C	74	52.970	ENSSFOG00015006475	tnrc6c1	99	51.969	Scleropages_formosus
ENSLAFG00000011122	TNRC6C	79	56.064	ENSSFOG00015004735	-	99	60.367	Scleropages_formosus
ENSLAFG00000011122	TNRC6C	99	47.252	ENSSMAG00000012761	tnrc6c1	99	49.827	Scophthalmus_maximus
ENSLAFG00000011122	TNRC6C	98	62.971	ENSSDUG00000002366	tnrc6c1	99	50.081	Seriola_dumerili
ENSLAFG00000011122	TNRC6C	88	62.756	ENSSLDG00000025613	tnrc6c1	97	48.438	Seriola_lalandi_dorsalis
ENSLAFG00000011122	TNRC6C	90	90.756	ENSSARG00000006816	TNRC6C	91	90.756	Sorex_araneus
ENSLAFG00000011122	TNRC6C	80	84.100	ENSSPUG00000007341	TNRC6C	98	84.100	Sphenodon_punctatus
ENSLAFG00000011122	TNRC6C	70	50.000	ENSSPAG00000014977	tnrc6c1	97	47.722	Stegastes_partitus
ENSLAFG00000011122	TNRC6C	96	80.723	ENSSSCG00000034373	TNRC6C	100	86.645	Sus_scrofa
ENSLAFG00000011122	TNRC6C	93	87.557	ENSTGUG00000007733	TNRC6C	100	87.787	Taeniopygia_guttata
ENSLAFG00000011122	TNRC6C	75	53.546	ENSTRUG00000011685	tnrc6c1	97	49.370	Takifugu_rubripes
ENSLAFG00000011122	TNRC6C	95	51.363	ENSTNIG00000005273	tnrc6c1	100	58.829	Tetraodon_nigroviridis
ENSLAFG00000011122	TNRC6C	58	90.625	ENSTBEG00000005046	TNRC6C	95	90.625	Tupaia_belangeri
ENSLAFG00000011122	TNRC6C	99	84.448	ENSTTRG00000010828	TNRC6C	99	90.378	Tursiops_truncatus
ENSLAFG00000011122	TNRC6C	99	88.995	ENSUMAG00000013614	TNRC6C	99	88.995	Ursus_maritimus
ENSLAFG00000011122	TNRC6C	96	89.421	ENSVVUG00000015268	TNRC6C	100	91.435	Vulpes_vulpes
ENSLAFG00000011122	TNRC6C	96	69.283	ENSXETG00000019470	tnrc6c	100	74.429	Xenopus_tropicalis
ENSLAFG00000011122	TNRC6C	98	62.017	ENSXMAG00000025971	tnrc6c1	99	49.555	Xiphophorus_maculatus