EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLAFG00000012144 (Gene tree)
Gene ID: -
Gene Symbol: CHD6
Alias: CHD5|FLJ22369|KIAA1335|RIGB|dJ620E11.1
Full Name: chromodomain helicase DNA binding protein 6
Gene Type: protein_coding
Species: Loxodonta_africana
Status: putative
Strand: Minus strand
Length: 170528 bases
Position: chrscaffold_19:40618624-40789151
Accession: 100654594
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLAFP00000010157	ResIII	PF04851.15	6.1e-08	1	1
ENSLAFP00000028967	ResIII	PF04851.15	6.6e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLAFT00000012154	CHD6-202	8157	-	ENSLAFP00000010157	2719 (aa)	XP_010589992	G3T8W0
ENSLAFT00000029915	CHD6-201	8094	-	ENSLAFP00000028967	2697 (aa)	-	G3UMA8

Gene Model

Click here to download ENSLAFG00000012144's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLAFG00000012144's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLAFG00000012144	CHD6	73	69.444	ENSLAFG00000000403	CHD7	74	64.943
ENSLAFG00000012144	CHD6	60	62.866	ENSLAFG00000009358	CHD8	62	62.801
ENSLAFG00000012144	CHD6	80	62.564	ENSLAFG00000015374	CHD9	70	66.502

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLAFG00000012144	CHD6	100	92.065	ENSG00000124177	CHD6	99	99.660	Homo_sapiens
ENSLAFG00000012144	CHD6	75	75.626	ENSAPOG00000013736	chd6	64	75.858	Acanthochromis_polyacanthus
ENSLAFG00000012144	CHD6	100	91.324	ENSAMEG00000009496	CHD6	100	91.324	Ailuropoda_melanoleuca
ENSLAFG00000012144	CHD6	79	72.422	ENSATEG00000005608	chd6	62	77.395	Anabas_testudineus
ENSLAFG00000012144	CHD6	70	78.339	ENSAPLG00000015592	CHD6	99	73.155	Anas_platyrhynchos
ENSLAFG00000012144	CHD6	99	67.687	ENSACAG00000006842	CHD6	99	68.294	Anolis_carolinensis
ENSLAFG00000012144	CHD6	100	91.550	ENSANAG00000037548	CHD6	99	93.028	Aotus_nancymaae
ENSLAFG00000012144	CHD6	80	71.735	ENSAMXG00000009576	chd6	75	72.401	Astyanax_mexicanus
ENSLAFG00000012144	CHD6	100	88.101	ENSBTAG00000005733	CHD6	100	88.101	Bos_taurus
ENSLAFG00000012144	CHD6	100	91.514	ENSCJAG00000017920	CHD6	99	92.844	Callithrix_jacchus
ENSLAFG00000012144	CHD6	100	91.324	ENSCAFG00000009236	CHD6	100	91.210	Canis_familiaris
ENSLAFG00000012144	CHD6	99	90.660	ENSCAFG00020012906	CHD6	99	97.347	Canis_lupus_dingo
ENSLAFG00000012144	CHD6	100	87.954	ENSCHIG00000017606	CHD6	100	87.954	Capra_hircus
ENSLAFG00000012144	CHD6	84	90.407	ENSTSYG00000014635	CHD6	100	90.407	Carlito_syrichta
ENSLAFG00000012144	CHD6	100	90.368	ENSCPOG00000015641	CHD6	100	90.368	Cavia_porcellus
ENSLAFG00000012144	CHD6	100	91.771	ENSCCAG00000036828	CHD6	99	93.028	Cebus_capucinus
ENSLAFG00000012144	CHD6	100	91.550	ENSCATG00000039248	CHD6	99	93.028	Cercocebus_atys
ENSLAFG00000012144	CHD6	100	90.169	ENSCLAG00000013743	CHD6	100	90.169	Chinchilla_lanigera
ENSLAFG00000012144	CHD6	100	91.807	ENSCSAG00000013997	CHD6	100	91.807	Chlorocebus_sabaeus
ENSLAFG00000012144	CHD6	91	90.448	ENSCHOG00000012647	CHD6	95	90.448	Choloepus_hoffmanni
ENSLAFG00000012144	CHD6	99	73.604	ENSCPBG00000019382	CHD6	99	74.269	Chrysemys_picta_bellii
ENSLAFG00000012144	CHD6	100	91.807	ENSCANG00000043435	CHD6	99	93.028	Colobus_angolensis_palliatus
ENSLAFG00000012144	CHD6	100	88.562	ENSCGRG00001002694	Chd6	100	88.562	Cricetulus_griseus_chok1gshd
ENSLAFG00000012144	CHD6	83	73.643	ENSDARG00000017244	chd6	79	73.361	Danio_rerio
ENSLAFG00000012144	CHD6	100	90.926	ENSDNOG00000004176	CHD6	99	91.258	Dasypus_novemcinctus
ENSLAFG00000012144	CHD6	99	91.719	ENSEASG00005023433	CHD6	95	97.490	Equus_asinus_asinus
ENSLAFG00000012144	CHD6	100	91.882	ENSECAG00000011761	CHD6	100	92.347	Equus_caballus
ENSLAFG00000012144	CHD6	71	79.848	ENSELUG00000012309	chd6	90	79.848	Esox_lucius
ENSLAFG00000012144	CHD6	100	91.029	ENSFCAG00000003572	CHD6	100	91.029	Felis_catus
ENSLAFG00000012144	CHD6	99	71.548	ENSFALG00000012563	CHD6	98	71.693	Ficedula_albicollis
ENSLAFG00000012144	CHD6	99	90.557	ENSFDAG00000013791	CHD6	99	90.557	Fukomys_damarensis
ENSLAFG00000012144	CHD6	74	69.693	ENSGMOG00000011715	chd6	85	69.836	Gadus_morhua
ENSLAFG00000012144	CHD6	79	69.763	ENSGACG00000000037	chd6	86	69.656	Gasterosteus_aculeatus
ENSLAFG00000012144	CHD6	100	92.065	ENSGGOG00000013123	CHD6	100	92.065	Gorilla_gorilla
ENSLAFG00000012144	CHD6	78	72.533	ENSHBUG00000014701	chd6	62	77.013	Haplochromis_burtoni
ENSLAFG00000012144	CHD6	100	90.959	ENSHGLG00000004548	CHD6	100	90.996	Heterocephalus_glaber_female
ENSLAFG00000012144	CHD6	100	90.959	ENSHGLG00100006401	CHD6	100	90.996	Heterocephalus_glaber_male
ENSLAFG00000012144	CHD6	78	76.066	ENSIPUG00000003692	chd6	74	76.720	Ictalurus_punctatus
ENSLAFG00000012144	CHD6	100	90.993	ENSSTOG00000013382	CHD6	100	90.993	Ictidomys_tridecemlineatus
ENSLAFG00000012144	CHD6	89	74.179	ENSLACG00000010881	CHD6	85	77.135	Latimeria_chalumnae
ENSLAFG00000012144	CHD6	73	80.639	ENSLOCG00000007386	chd6	84	76.012	Lepisosteus_oculatus
ENSLAFG00000012144	CHD6	100	91.954	ENSMFAG00000032830	CHD6	99	93.028	Macaca_fascicularis
ENSLAFG00000012144	CHD6	100	91.954	ENSMMUG00000020458	CHD6	99	93.028	Macaca_mulatta
ENSLAFG00000012144	CHD6	100	91.954	ENSMNEG00000040847	CHD6	99	93.028	Macaca_nemestrina
ENSLAFG00000012144	CHD6	100	91.557	ENSMLEG00000031965	CHD6	99	93.028	Mandrillus_leucophaeus
ENSLAFG00000012144	CHD6	74	75.000	ENSMAMG00000013111	chd6	63	75.551	Mastacembelus_armatus
ENSLAFG00000012144	CHD6	99	71.919	ENSMGAG00000001121	CHD6	99	72.714	Meleagris_gallopavo
ENSLAFG00000012144	CHD6	99	91.393	ENSMICG00000016641	CHD6	99	92.294	Microcebus_murinus
ENSLAFG00000012144	CHD6	89	81.379	ENSMODG00000000720	-	99	81.462	Monodelphis_domestica
ENSLAFG00000012144	CHD6	100	87.017	MGP_CAROLIEiJ_G0024604	Chd6	100	94.177	Mus_caroli
ENSLAFG00000012144	CHD6	100	87.164	ENSMUSG00000057133	Chd6	100	94.093	Mus_musculus
ENSLAFG00000012144	CHD6	100	86.870	MGP_PahariEiJ_G0026048	Chd6	100	94.515	Mus_pahari
ENSLAFG00000012144	CHD6	100	87.128	MGP_SPRETEiJ_G0025526	Chd6	100	94.177	Mus_spretus
ENSLAFG00000012144	CHD6	100	89.952	ENSMPUG00000017695	CHD6	100	89.989	Mustela_putorius_furo
ENSLAFG00000012144	CHD6	100	91.213	ENSMLUG00000016247	CHD6	100	91.213	Myotis_lucifugus
ENSLAFG00000012144	CHD6	80	73.303	ENSNBRG00000013839	chd6	79	72.904	Neolamprologus_brichardi
ENSLAFG00000012144	CHD6	100	90.235	ENSNLEG00000006496	CHD6	100	90.272	Nomascus_leucogenys
ENSLAFG00000012144	CHD6	100	86.250	ENSOPRG00000013376	-	100	86.213	Ochotona_princeps
ENSLAFG00000012144	CHD6	84	75.679	ENSONIG00000000393	chd6	88	73.517	Oreochromis_niloticus
ENSLAFG00000012144	CHD6	100	70.413	ENSOANG00000014347	CHD6	99	70.369	Ornithorhynchus_anatinus
ENSLAFG00000012144	CHD6	100	88.303	ENSOCUG00000012394	CHD6	100	88.742	Oryctolagus_cuniculus
ENSLAFG00000012144	CHD6	81	70.122	ENSORLG00020021891	chd6	95	85.772	Oryzias_latipes_hni
ENSLAFG00000012144	CHD6	99	90.126	ENSOGAG00000002427	CHD6	99	89.989	Otolemur_garnettii
ENSLAFG00000012144	CHD6	100	85.256	ENSOARG00000002597	CHD6	100	85.630	Ovis_aries
ENSLAFG00000012144	CHD6	100	91.066	ENSPPRG00000014756	CHD6	100	91.066	Panthera_pardus
ENSLAFG00000012144	CHD6	100	90.956	ENSPTIG00000011094	CHD6	100	90.956	Panthera_tigris_altaica
ENSLAFG00000012144	CHD6	100	92.138	ENSPTRG00000013504	CHD6	100	92.138	Pan_troglodytes
ENSLAFG00000012144	CHD6	100	91.807	ENSPANG00000025554	CHD6	99	92.844	Papio_anubis
ENSLAFG00000012144	CHD6	76	76.908	ENSPKIG00000005578	chd6	79	72.777	Paramormyrops_kingsleyae
ENSLAFG00000012144	CHD6	78	76.316	ENSPMGG00000014877	chd6	88	76.726	Periophthalmus_magnuspinnatus
ENSLAFG00000012144	CHD6	100	80.191	ENSPCIG00000028037	CHD6	100	80.778	Phascolarctos_cinereus
ENSLAFG00000012144	CHD6	79	70.635	ENSPLAG00000003128	chd6	67	73.124	Poecilia_latipinna
ENSLAFG00000012144	CHD6	76	70.549	ENSPREG00000022653	chd6	99	86.264	Poecilia_reticulata
ENSLAFG00000012144	CHD6	100	92.178	ENSPPYG00000011016	CHD6	100	92.178	Pongo_abelii
ENSLAFG00000012144	CHD6	99	92.053	ENSPCOG00000001089	CHD6	99	92.844	Propithecus_coquereli
ENSLAFG00000012144	CHD6	80	74.984	ENSPNYG00000022516	chd6	78	74.464	Pundamilia_nyererei
ENSLAFG00000012144	CHD6	79	73.598	ENSPNAG00000012825	chd6	77	73.610	Pygocentrus_nattereri
ENSLAFG00000012144	CHD6	100	87.140	ENSRNOG00000016744	Chd6	100	86.797	Rattus_norvegicus
ENSLAFG00000012144	CHD6	100	91.587	ENSSBOG00000022089	CHD6	99	93.028	Saimiri_boliviensis_boliviensis
ENSLAFG00000012144	CHD6	100	79.948	ENSSHAG00000017072	CHD6	99	80.800	Sarcophilus_harrisii
ENSLAFG00000012144	CHD6	79	76.543	ENSSFOG00015012920	chd6	79	75.371	Scleropages_formosus
ENSLAFG00000012144	CHD6	59	100.000	ENSSARG00000002615	-	61	100.000	Sorex_araneus
ENSLAFG00000012144	CHD6	100	90.445	ENSSSCG00000007360	CHD6	100	91.242	Sus_scrofa
ENSLAFG00000012144	CHD6	97	73.752	ENSTGUG00000003179	CHD6	99	73.976	Taeniopygia_guttata
ENSLAFG00000012144	CHD6	77	77.445	ENSTNIG00000017487	chd6	88	75.642	Tetraodon_nigroviridis
ENSLAFG00000012144	CHD6	100	88.101	ENSTTRG00000013438	CHD6	100	88.101	Tursiops_truncatus
ENSLAFG00000012144	CHD6	100	89.232	ENSUAMG00000024036	CHD6	95	95.753	Ursus_americanus
ENSLAFG00000012144	CHD6	99	91.654	ENSUMAG00000002017	CHD6	95	95.753	Ursus_maritimus
ENSLAFG00000012144	CHD6	94	89.596	ENSVPAG00000007941	CHD6	95	89.596	Vicugna_pacos
ENSLAFG00000012144	CHD6	100	91.250	ENSVVUG00000029164	CHD6	100	91.250	Vulpes_vulpes
ENSLAFG00000012144	CHD6	99	60.768	ENSXETG00000021445	chd6	99	60.735	Xenopus_tropicalis