EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLAFG00000014948 (Gene tree)
Gene ID: -
Gene Symbol: POLR1A
Alias: DKFZP586M0122|FLJ21915|RPA1|RPO1-4
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Loxodonta_africana
Status: putative
Strand: Plus strand
Length: 79437 bases
Position: chrscaffold_86:2279813-2359249
Accession: 17264
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLAFP00000012518	RNA_pol_Rpb1_5	PF04998.17	1.7e-103	1	1
ENSLAFP00000029145	RNA_pol_Rpb1_5	PF04998.17	1.7e-103	1	1
ENSLAFP00000029145	RNA_pol_Rpb1_4	PF05000.17	1.9e-25	1	1
ENSLAFP00000012518	RNA_pol_Rpb1_4	PF05000.17	2e-25	1	1
ENSLAFP00000029145	RNA_pol_Rpb1_2	PF00623.20	2.5e-65	1	1
ENSLAFP00000012518	RNA_pol_Rpb1_2	PF00623.20	2.5e-65	1	1
ENSLAFP00000029145	RNA_pol_Rpb1_3	PF04983.18	1.3e-35	1	1
ENSLAFP00000012518	RNA_pol_Rpb1_3	PF04983.18	1.4e-35	1	1
ENSLAFP00000029145	RNA_pol_Rpb1_1	PF04997.12	3.1e-21	1	1
ENSLAFP00000012518	RNA_pol_Rpb1_1	PF04997.12	6.3e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLAFT00000014950	POLR1A-201	5151	-	ENSLAFP00000012518	1716 (aa)	-	G3TE69
ENSLAFT00000037458	POLR1A-202	5142	-	ENSLAFP00000029145	1713 (aa)	-	G3UMT6

Gene Model

Click here to download ENSLAFG00000014948's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLAFG00000014948's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLAFG00000014948	POLR1A	73	33.636	ENSLAFG00000008626	-	62	33.636
ENSLAFG00000014948	POLR1A	59	34.906	ENSLAFG00000016719	POLR3A	66	34.906

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLAFG00000014948	POLR1A	100	89.757	ENSG00000068654	POLR1A	100	89.699	Homo_sapiens
ENSLAFG00000014948	POLR1A	69	67.448	ENSAPOG00000017945	polr1a	99	67.448	Acanthochromis_polyacanthus
ENSLAFG00000014948	POLR1A	100	89.901	ENSAMEG00000005807	POLR1A	100	92.418	Ailuropoda_melanoleuca
ENSLAFG00000014948	POLR1A	96	67.633	ENSACIG00000022147	polr1a	100	67.566	Amphilophus_citrinellus
ENSLAFG00000014948	POLR1A	100	66.532	ENSAOCG00000017336	polr1a	100	68.622	Amphiprion_ocellaris
ENSLAFG00000014948	POLR1A	100	66.474	ENSAPEG00000016105	polr1a	100	66.146	Amphiprion_percula
ENSLAFG00000014948	POLR1A	100	66.358	ENSATEG00000016773	polr1a	100	66.415	Anabas_testudineus
ENSLAFG00000014948	POLR1A	85	73.283	ENSAPLG00000013871	POLR1A	99	73.148	Anas_platyrhynchos
ENSLAFG00000014948	POLR1A	99	69.832	ENSACAG00000012141	POLR1A	99	69.803	Anolis_carolinensis
ENSLAFG00000014948	POLR1A	100	88.715	ENSANAG00000033927	POLR1A	100	88.368	Aotus_nancymaae
ENSLAFG00000014948	POLR1A	100	62.811	ENSACLG00000020541	polr1a	100	62.413	Astatotilapia_calliptera
ENSLAFG00000014948	POLR1A	100	89.340	ENSBTAG00000006481	POLR1A	100	89.224	Bos_taurus
ENSLAFG00000014948	POLR1A	99	38.682	WBGene00012999	rpoa-1	98	38.492	Caenorhabditis_elegans
ENSLAFG00000014948	POLR1A	100	88.484	ENSCJAG00000019547	POLR1A	100	88.368	Callithrix_jacchus
ENSLAFG00000014948	POLR1A	100	89.739	ENSCAFG00000007613	POLR1A	100	89.675	Canis_familiaris
ENSLAFG00000014948	POLR1A	100	89.913	ENSCAFG00020014752	POLR1A	100	89.751	Canis_lupus_dingo
ENSLAFG00000014948	POLR1A	100	87.937	ENSCHIG00000018204	POLR1A	100	87.937	Capra_hircus
ENSLAFG00000014948	POLR1A	100	86.790	ENSTSYG00000002761	POLR1A	100	86.725	Carlito_syrichta
ENSLAFG00000014948	POLR1A	97	82.718	ENSCAPG00000010132	POLR1A	100	82.896	Cavia_aperea
ENSLAFG00000014948	POLR1A	100	87.297	ENSCPOG00000012350	POLR1A	100	87.471	Cavia_porcellus
ENSLAFG00000014948	POLR1A	100	89.120	ENSCCAG00000019839	POLR1A	100	89.005	Cebus_capucinus
ENSLAFG00000014948	POLR1A	100	90.162	ENSCATG00000029786	POLR1A	100	90.046	Cercocebus_atys
ENSLAFG00000014948	POLR1A	100	88.464	ENSCLAG00000005187	POLR1A	100	88.232	Chinchilla_lanigera
ENSLAFG00000014948	POLR1A	100	90.046	ENSCSAG00000016251	POLR1A	100	89.931	Chlorocebus_sabaeus
ENSLAFG00000014948	POLR1A	99	74.927	ENSCPBG00000001115	POLR1A	99	74.985	Chrysemys_picta_bellii
ENSLAFG00000014948	POLR1A	99	46.493	ENSCSAVG00000007184	-	91	54.534	Ciona_savignyi
ENSLAFG00000014948	POLR1A	100	87.045	ENSCANG00000031785	POLR1A	100	86.929	Colobus_angolensis_palliatus
ENSLAFG00000014948	POLR1A	96	89.048	ENSCGRG00001006651	Polr1a	100	89.048	Cricetulus_griseus_chok1gshd
ENSLAFG00000014948	POLR1A	60	86.271	ENSCGRG00000010834	Polr1a	100	86.893	Cricetulus_griseus_crigri
ENSLAFG00000014948	POLR1A	100	62.355	ENSCSEG00000020190	polr1a	100	62.209	Cynoglossus_semilaevis
ENSLAFG00000014948	POLR1A	100	63.922	ENSCVAG00000020941	polr1a	100	64.492	Cyprinodon_variegatus
ENSLAFG00000014948	POLR1A	100	67.264	ENSDARG00000098375	polr1a	100	67.188	Danio_rerio
ENSLAFG00000014948	POLR1A	100	83.372	ENSDNOG00000010829	POLR1A	100	83.372	Dasypus_novemcinctus
ENSLAFG00000014948	POLR1A	100	86.613	ENSDORG00000008298	Polr1a	100	87.017	Dipodomys_ordii
ENSLAFG00000014948	POLR1A	79	44.259	FBgn0019938	RpI1	99	42.543	Drosophila_melanogaster
ENSLAFG00000014948	POLR1A	72	100.000	ENSETEG00000000412	-	72	100.000	Echinops_telfairi
ENSLAFG00000014948	POLR1A	86	66.667	ENSEBUG00000005667	-	99	47.907	Eptatretus_burgeri
ENSLAFG00000014948	POLR1A	100	91.262	ENSEASG00005001625	POLR1A	100	91.204	Equus_asinus_asinus
ENSLAFG00000014948	POLR1A	100	91.262	ENSECAG00000030510	-	100	92.982	Equus_caballus
ENSLAFG00000014948	POLR1A	100	91.262	ENSECAG00000010092	POLR1A	100	92.982	Equus_caballus
ENSLAFG00000014948	POLR1A	100	91.262	ENSECAG00000036306	-	100	92.982	Equus_caballus
ENSLAFG00000014948	POLR1A	85	96.809	ENSEEUG00000000676	POLR1A	85	96.667	Erinaceus_europaeus
ENSLAFG00000014948	POLR1A	100	67.572	ENSELUG00000012769	polr1a	99	67.091	Esox_lucius
ENSLAFG00000014948	POLR1A	100	90.683	ENSFCAG00000008966	POLR1A	100	90.493	Felis_catus
ENSLAFG00000014948	POLR1A	99	71.093	ENSFALG00000010082	POLR1A	99	71.638	Ficedula_albicollis
ENSLAFG00000014948	POLR1A	100	87.928	ENSFDAG00000013726	POLR1A	100	87.812	Fukomys_damarensis
ENSLAFG00000014948	POLR1A	100	61.838	ENSFHEG00000005996	polr1a	100	62.231	Fundulus_heteroclitus
ENSLAFG00000014948	POLR1A	100	60.280	ENSGMOG00000002230	polr1a	100	60.349	Gadus_morhua
ENSLAFG00000014948	POLR1A	90	69.385	ENSGALG00000038160	-	99	69.385	Gallus_gallus
ENSLAFG00000014948	POLR1A	100	64.965	ENSGAFG00000015266	polr1a	100	64.849	Gambusia_affinis
ENSLAFG00000014948	POLR1A	100	64.733	ENSGACG00000018791	polr1a	100	65.020	Gasterosteus_aculeatus
ENSLAFG00000014948	POLR1A	90	75.599	ENSGAGG00000004984	-	95	81.061	Gopherus_agassizii
ENSLAFG00000014948	POLR1A	100	89.641	ENSGGOG00000001788	POLR1A	100	89.583	Gorilla_gorilla
ENSLAFG00000014948	POLR1A	90	63.665	ENSHBUG00000020021	polr1a	100	64.105	Haplochromis_burtoni
ENSLAFG00000014948	POLR1A	100	87.870	ENSHGLG00000006334	POLR1A	100	88.044	Heterocephalus_glaber_female
ENSLAFG00000014948	POLR1A	100	87.616	ENSHGLG00100006614	POLR1A	100	87.789	Heterocephalus_glaber_male
ENSLAFG00000014948	POLR1A	100	62.420	ENSHCOG00000003345	polr1a	100	62.420	Hippocampus_comes
ENSLAFG00000014948	POLR1A	100	66.589	ENSIPUG00000013174	polr1a	100	66.492	Ictalurus_punctatus
ENSLAFG00000014948	POLR1A	100	86.113	ENSSTOG00000012580	POLR1A	100	86.369	Ictidomys_tridecemlineatus
ENSLAFG00000014948	POLR1A	100	87.030	ENSJJAG00000013113	Polr1a	100	87.261	Jaculus_jaculus
ENSLAFG00000014948	POLR1A	100	65.275	ENSKMAG00000007399	polr1a	100	65.174	Kryptolebias_marmoratus
ENSLAFG00000014948	POLR1A	94	68.640	ENSLBEG00000015401	polr1a	99	68.851	Labrus_bergylta
ENSLAFG00000014948	POLR1A	53	76.815	ENSLACG00000003218	polr1a	100	76.815	Latimeria_chalumnae
ENSLAFG00000014948	POLR1A	100	70.643	ENSLOCG00000010881	polr1a	100	70.809	Lepisosteus_oculatus
ENSLAFG00000014948	POLR1A	100	90.046	ENSMFAG00000046097	POLR1A	100	89.931	Macaca_fascicularis
ENSLAFG00000014948	POLR1A	100	89.931	ENSMMUG00000015815	POLR1A	100	89.815	Macaca_mulatta
ENSLAFG00000014948	POLR1A	100	90.046	ENSMNEG00000043313	POLR1A	100	89.931	Macaca_nemestrina
ENSLAFG00000014948	POLR1A	100	89.352	ENSMLEG00000042428	POLR1A	100	89.236	Mandrillus_leucophaeus
ENSLAFG00000014948	POLR1A	100	66.647	ENSMAMG00000016565	polr1a	100	66.492	Mastacembelus_armatus
ENSLAFG00000014948	POLR1A	100	66.050	ENSMZEG00005004915	polr1a	100	65.719	Maylandia_zebra
ENSLAFG00000014948	POLR1A	99	69.142	ENSMGAG00000013111	POLR1A	99	69.275	Meleagris_gallopavo
ENSLAFG00000014948	POLR1A	92	86.565	ENSMAUG00000008497	Polr1a	100	86.739	Mesocricetus_auratus
ENSLAFG00000014948	POLR1A	100	89.589	ENSMICG00000000757	POLR1A	100	89.474	Microcebus_murinus
ENSLAFG00000014948	POLR1A	100	86.860	ENSMOCG00000000122	Polr1a	100	87.522	Microtus_ochrogaster
ENSLAFG00000014948	POLR1A	100	65.154	ENSMMOG00000010216	polr1a	100	65.329	Mola_mola
ENSLAFG00000014948	POLR1A	100	75.115	ENSMODG00000009335	POLR1A	100	75.057	Monodelphis_domestica
ENSLAFG00000014948	POLR1A	100	65.665	ENSMALG00000013363	polr1a	100	65.820	Monopterus_albus
ENSLAFG00000014948	POLR1A	100	85.590	MGP_CAROLIEiJ_G0028494	Polr1a	100	85.515	Mus_caroli
ENSLAFG00000014948	POLR1A	100	85.706	ENSMUSG00000049553	Polr1a	100	85.573	Mus_musculus
ENSLAFG00000014948	POLR1A	100	86.620	MGP_PahariEiJ_G0022230	Polr1a	100	86.620	Mus_pahari
ENSLAFG00000014948	POLR1A	100	84.105	MGP_SPRETEiJ_G0029499	Polr1a	100	84.220	Mus_spretus
ENSLAFG00000014948	POLR1A	100	89.977	ENSMPUG00000009135	POLR1A	100	89.913	Mustela_putorius_furo
ENSLAFG00000014948	POLR1A	100	88.619	ENSMLUG00000015723	POLR1A	100	88.273	Myotis_lucifugus
ENSLAFG00000014948	POLR1A	100	86.353	ENSNGAG00000017907	Polr1a	100	87.072	Nannospalax_galili
ENSLAFG00000014948	POLR1A	100	65.914	ENSNBRG00000000519	polr1a	100	65.719	Neolamprologus_brichardi
ENSLAFG00000014948	POLR1A	100	87.730	ENSNLEG00000002264	POLR1A	100	87.615	Nomascus_leucogenys
ENSLAFG00000014948	POLR1A	75	94.488	ENSMEUG00000011665	-	76	94.488	Notamacropus_eugenii
ENSLAFG00000014948	POLR1A	99	81.540	ENSOPRG00000008269	POLR1A	97	94.444	Ochotona_princeps
ENSLAFG00000014948	POLR1A	100	87.877	ENSODEG00000003542	POLR1A	100	87.761	Octodon_degus
ENSLAFG00000014948	POLR1A	100	66.069	ENSONIG00000015895	polr1a	100	66.048	Oreochromis_niloticus
ENSLAFG00000014948	POLR1A	100	88.870	ENSOCUG00000010138	POLR1A	100	88.812	Oryctolagus_cuniculus
ENSLAFG00000014948	POLR1A	100	64.873	ENSORLG00000008753	polr1a	99	64.576	Oryzias_latipes
ENSLAFG00000014948	POLR1A	100	63.499	ENSORLG00020020726	polr1a	99	63.316	Oryzias_latipes_hni
ENSLAFG00000014948	POLR1A	95	75.532	ENSORLG00015016071	polr1a	98	75.556	Oryzias_latipes_hsok
ENSLAFG00000014948	POLR1A	100	88.484	ENSOGAG00000004031	POLR1A	100	88.368	Otolemur_garnettii
ENSLAFG00000014948	POLR1A	100	88.388	ENSOARG00000020601	POLR1A	100	88.619	Ovis_aries
ENSLAFG00000014948	POLR1A	100	89.641	ENSPPAG00000042450	POLR1A	100	89.583	Pan_paniscus
ENSLAFG00000014948	POLR1A	100	90.799	ENSPPRG00000006702	POLR1A	100	90.551	Panthera_pardus
ENSLAFG00000014948	POLR1A	100	90.254	ENSPTIG00000018783	POLR1A	100	90.006	Panthera_tigris_altaica
ENSLAFG00000014948	POLR1A	100	89.468	ENSPTRG00000012147	POLR1A	100	89.410	Pan_troglodytes
ENSLAFG00000014948	POLR1A	100	90.162	ENSPANG00000025908	POLR1A	100	90.046	Papio_anubis
ENSLAFG00000014948	POLR1A	94	73.611	ENSPKIG00000005468	polr1a	99	73.611	Paramormyrops_kingsleyae
ENSLAFG00000014948	POLR1A	63	72.761	ENSPSIG00000009321	-	99	72.811	Pelodiscus_sinensis
ENSLAFG00000014948	POLR1A	55	67.975	ENSPMGG00000009718	polr1a	95	67.975	Periophthalmus_magnuspinnatus
ENSLAFG00000014948	POLR1A	100	87.456	ENSPEMG00000022224	Polr1a	100	88.058	Peromyscus_maniculatus_bairdii
ENSLAFG00000014948	POLR1A	95	79.598	ENSPCIG00000004222	POLR1A	99	79.034	Phascolarctos_cinereus
ENSLAFG00000014948	POLR1A	100	64.658	ENSPFOG00000005025	polr1a	100	64.716	Poecilia_formosa
ENSLAFG00000014948	POLR1A	100	64.870	ENSPLAG00000021389	polr1a	100	64.870	Poecilia_latipinna
ENSLAFG00000014948	POLR1A	100	62.862	ENSPMEG00000006463	polr1a	100	62.826	Poecilia_mexicana
ENSLAFG00000014948	POLR1A	100	64.442	ENSPREG00000002389	polr1a	100	64.719	Poecilia_reticulata
ENSLAFG00000014948	POLR1A	100	89.120	ENSPPYG00000012217	POLR1A	100	89.005	Pongo_abelii
ENSLAFG00000014948	POLR1A	92	100.000	ENSPCAG00000011582	POLR1A	92	100.000	Procavia_capensis
ENSLAFG00000014948	POLR1A	100	89.589	ENSPCOG00000026987	POLR1A	100	89.532	Propithecus_coquereli
ENSLAFG00000014948	POLR1A	95	86.387	ENSPVAG00000012674	POLR1A	95	86.755	Pteropus_vampyrus
ENSLAFG00000014948	POLR1A	100	65.934	ENSPNYG00000000026	polr1a	100	65.603	Pundamilia_nyererei
ENSLAFG00000014948	POLR1A	100	67.690	ENSPNAG00000019223	polr1a	99	70.242	Pygocentrus_nattereri
ENSLAFG00000014948	POLR1A	100	87.784	ENSRNOG00000009545	Polr1a	100	87.784	Rattus_norvegicus
ENSLAFG00000014948	POLR1A	100	89.352	ENSRBIG00000028335	POLR1A	100	89.236	Rhinopithecus_bieti
ENSLAFG00000014948	POLR1A	100	89.294	ENSRROG00000031473	POLR1A	100	89.178	Rhinopithecus_roxellana
ENSLAFG00000014948	POLR1A	99	36.836	YOR341W	RPA190	99	36.958	Saccharomyces_cerevisiae
ENSLAFG00000014948	POLR1A	100	88.947	ENSSBOG00000030262	POLR1A	100	88.889	Saimiri_boliviensis_boliviensis
ENSLAFG00000014948	POLR1A	100	73.860	ENSSHAG00000014739	POLR1A	100	73.830	Sarcophilus_harrisii
ENSLAFG00000014948	POLR1A	100	68.329	ENSSFOG00015019716	polr1a	100	68.155	Scleropages_formosus
ENSLAFG00000014948	POLR1A	100	66.088	ENSSMAG00000014342	polr1a	100	65.914	Scophthalmus_maximus
ENSLAFG00000014948	POLR1A	100	66.899	ENSSDUG00000014631	polr1a	100	67.110	Seriola_dumerili
ENSLAFG00000014948	POLR1A	100	64.986	ENSSLDG00000024095	polr1a	100	65.009	Seriola_lalandi_dorsalis
ENSLAFG00000014948	POLR1A	75	98.936	ENSSARG00000003136	-	76	98.936	Sorex_araneus
ENSLAFG00000014948	POLR1A	95	80.000	ENSSPUG00000004215	POLR1A	98	80.000	Sphenodon_punctatus
ENSLAFG00000014948	POLR1A	63	72.260	ENSSPAG00000016341	polr1a	94	72.260	Stegastes_partitus
ENSLAFG00000014948	POLR1A	83	90.579	ENSSSCG00000008226	POLR1A	99	90.573	Sus_scrofa
ENSLAFG00000014948	POLR1A	99	70.501	ENSTGUG00000010704	POLR1A	100	70.855	Taeniopygia_guttata
ENSLAFG00000014948	POLR1A	100	63.947	ENSTRUG00000002210	polr1a	99	64.100	Takifugu_rubripes
ENSLAFG00000014948	POLR1A	100	59.977	ENSTNIG00000010116	polr1a	100	59.884	Tetraodon_nigroviridis
ENSLAFG00000014948	POLR1A	74	94.248	ENSTBEG00000008646	POLR1A	74	94.248	Tupaia_belangeri
ENSLAFG00000014948	POLR1A	100	85.490	ENSTTRG00000008597	POLR1A	100	85.847	Tursiops_truncatus
ENSLAFG00000014948	POLR1A	68	90.347	ENSUAMG00000012158	-	94	89.822	Ursus_americanus
ENSLAFG00000014948	POLR1A	100	89.166	ENSUMAG00000006700	POLR1A	100	89.147	Ursus_maritimus
ENSLAFG00000014948	POLR1A	100	89.797	ENSVVUG00000001245	POLR1A	100	89.791	Vulpes_vulpes
ENSLAFG00000014948	POLR1A	100	67.859	ENSXETG00000001952	polr1a	100	69.129	Xenopus_tropicalis
ENSLAFG00000014948	POLR1A	100	64.910	ENSXMAG00000004032	polr1a	100	64.910	Xiphophorus_maculatus