EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLAFG00000014963 (Gene tree)
Gene ID: -
Gene Symbol: UPF1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Loxodonta_africana
Status: putative
Strand: Minus strand
Length: 22875 bases
Position: chrscaffold_26:23307412-23330286
Accession: 100654230
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLAFP00000012529	UPF1_Zn_bind	PF09416.10	6.1e-75	1	1
ENSLAFP00000023305	UPF1_Zn_bind	PF09416.10	6.1e-75	1	1
ENSLAFP00000012529	ResIII	PF04851.15	2.2e-05	1	1
ENSLAFP00000023305	ResIII	PF04851.15	2.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLAFT00000014965	UPF1-202	3384	-	ENSLAFP00000012529	1128 (aa)	XP_010591516	G3TE78
ENSLAFT00000031457	UPF1-201	3390	-	ENSLAFP00000023305	1129 (aa)	-	G3U647

Gene Model

Click here to download ENSLAFG00000014963's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLAFG00000014963's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLAFG00000014963	UPF1	100	98.761	ENSG00000005007	UPF1	100	98.761	Homo_sapiens
ENSLAFG00000014963	UPF1	100	91.327	ENSAPOG00000010916	-	100	91.327	Acanthochromis_polyacanthus
ENSLAFG00000014963	UPF1	100	90.468	ENSAPOG00000023773	upf1	100	90.468	Acanthochromis_polyacanthus
ENSLAFG00000014963	UPF1	100	97.966	ENSAMEG00000011474	UPF1	100	97.966	Ailuropoda_melanoleuca
ENSLAFG00000014963	UPF1	100	90.514	ENSACIG00000019949	upf1	100	90.556	Amphilophus_citrinellus
ENSLAFG00000014963	UPF1	92	93.533	ENSACIG00000010985	-	100	93.629	Amphilophus_citrinellus
ENSLAFG00000014963	UPF1	100	91.327	ENSAOCG00000006352	-	100	91.327	Amphiprion_ocellaris
ENSLAFG00000014963	UPF1	100	89.982	ENSAOCG00000018519	upf1	100	90.297	Amphiprion_ocellaris
ENSLAFG00000014963	UPF1	100	89.982	ENSAPEG00000016344	upf1	100	90.297	Amphiprion_percula
ENSLAFG00000014963	UPF1	100	91.327	ENSAPEG00000006292	-	100	91.327	Amphiprion_percula
ENSLAFG00000014963	UPF1	100	89.092	ENSATEG00000017867	upf1	100	89.878	Anabas_testudineus
ENSLAFG00000014963	UPF1	100	91.416	ENSATEG00000016606	-	100	91.416	Anabas_testudineus
ENSLAFG00000014963	UPF1	93	97.723	ENSAPLG00000009175	UPF1	100	97.723	Anas_platyrhynchos
ENSLAFG00000014963	UPF1	95	96.365	ENSANAG00000024107	UPF1	97	96.365	Aotus_nancymaae
ENSLAFG00000014963	UPF1	100	91.231	ENSACLG00000022630	-	100	91.143	Astatotilapia_calliptera
ENSLAFG00000014963	UPF1	100	90.248	ENSACLG00000007181	upf1	100	90.291	Astatotilapia_calliptera
ENSLAFG00000014963	UPF1	100	92.124	ENSAMXG00000042187	upf1	100	92.566	Astyanax_mexicanus
ENSLAFG00000014963	UPF1	100	98.582	ENSBTAG00000020922	UPF1	100	98.582	Bos_taurus
ENSLAFG00000014963	UPF1	89	50.540	WBGene00004880	smg-2	99	47.907	Caenorhabditis_elegans
ENSLAFG00000014963	UPF1	100	98.761	ENSCJAG00000019627	UPF1	100	98.761	Callithrix_jacchus
ENSLAFG00000014963	UPF1	100	98.761	ENSCAFG00000014578	UPF1	100	98.761	Canis_familiaris
ENSLAFG00000014963	UPF1	100	97.788	ENSCAFG00020012347	UPF1	100	97.788	Canis_lupus_dingo
ENSLAFG00000014963	UPF1	100	98.230	ENSCHIG00000011018	UPF1	100	98.230	Capra_hircus
ENSLAFG00000014963	UPF1	96	97.410	ENSTSYG00000008877	UPF1	99	97.577	Carlito_syrichta
ENSLAFG00000014963	UPF1	93	98.478	ENSCAPG00000005758	UPF1	95	98.478	Cavia_aperea
ENSLAFG00000014963	UPF1	100	96.375	ENSCPOG00000025463	UPF1	100	96.375	Cavia_porcellus
ENSLAFG00000014963	UPF1	100	98.316	ENSCCAG00000032175	UPF1	100	98.316	Cebus_capucinus
ENSLAFG00000014963	UPF1	95	97.848	ENSCATG00000040306	UPF1	98	99.049	Cercocebus_atys
ENSLAFG00000014963	UPF1	96	97.143	ENSCLAG00000004037	UPF1	99	99.049	Chinchilla_lanigera
ENSLAFG00000014963	UPF1	100	97.788	ENSCSAG00000005276	UPF1	100	97.788	Chlorocebus_sabaeus
ENSLAFG00000014963	UPF1	100	95.579	ENSCPBG00000012513	UPF1	100	95.579	Chrysemys_picta_bellii
ENSLAFG00000014963	UPF1	78	77.123	ENSCING00000021399	-	99	77.350	Ciona_intestinalis
ENSLAFG00000014963	UPF1	99	71.253	ENSCSAVG00000006533	-	99	71.341	Ciona_savignyi
ENSLAFG00000014963	UPF1	95	98.410	ENSCANG00000029819	UPF1	99	98.410	Colobus_angolensis_palliatus
ENSLAFG00000014963	UPF1	100	97.168	ENSCGRG00001021067	Upf1	100	97.168	Cricetulus_griseus_chok1gshd
ENSLAFG00000014963	UPF1	95	98.034	ENSCGRG00000013480	Upf1	99	98.034	Cricetulus_griseus_crigri
ENSLAFG00000014963	UPF1	100	85.487	ENSCSEG00000017239	upf1	100	85.575	Cynoglossus_semilaevis
ENSLAFG00000014963	UPF1	100	91.408	ENSCSEG00000016159	-	100	91.320	Cynoglossus_semilaevis
ENSLAFG00000014963	UPF1	100	91.150	ENSCVAG00000010561	upf1	100	91.062	Cyprinodon_variegatus
ENSLAFG00000014963	UPF1	100	91.947	ENSDARG00000016302	upf1	100	92.389	Danio_rerio
ENSLAFG00000014963	UPF1	96	94.172	ENSDORG00000009984	Upf1	97	94.172	Dipodomys_ordii
ENSLAFG00000014963	UPF1	85	70.215	FBgn0030354	Upf1	84	66.793	Drosophila_melanogaster
ENSLAFG00000014963	UPF1	56	83.892	ENSEBUG00000010069	upf1	96	83.892	Eptatretus_burgeri
ENSLAFG00000014963	UPF1	100	97.872	ENSEASG00005006549	UPF1	100	97.872	Equus_asinus_asinus
ENSLAFG00000014963	UPF1	100	97.872	ENSECAG00000010639	UPF1	100	97.872	Equus_caballus
ENSLAFG00000014963	UPF1	100	89.604	ENSELUG00000020917	upf1	100	89.868	Esox_lucius
ENSLAFG00000014963	UPF1	100	90.757	ENSELUG00000012916	-	100	90.677	Esox_lucius
ENSLAFG00000014963	UPF1	100	98.673	ENSFCAG00000009757	UPF1	100	98.673	Felis_catus
ENSLAFG00000014963	UPF1	96	95.404	ENSFALG00000009312	UPF1	99	95.404	Ficedula_albicollis
ENSLAFG00000014963	UPF1	97	96.334	ENSFDAG00000014816	UPF1	99	98.953	Fukomys_damarensis
ENSLAFG00000014963	UPF1	100	87.533	ENSFHEG00000006428	upf1	100	87.621	Fundulus_heteroclitus
ENSLAFG00000014963	UPF1	85	92.559	ENSFHEG00000016276	-	96	92.740	Fundulus_heteroclitus
ENSLAFG00000014963	UPF1	100	91.062	ENSGMOG00000007541	upf1	100	91.504	Gadus_morhua
ENSLAFG00000014963	UPF1	100	96.280	ENSGALG00000003220	UPF1	100	96.280	Gallus_gallus
ENSLAFG00000014963	UPF1	62	93.901	ENSGAFG00000015443	-	88	91.621	Gambusia_affinis
ENSLAFG00000014963	UPF1	100	90.877	ENSGAFG00000004831	upf1	100	90.788	Gambusia_affinis
ENSLAFG00000014963	UPF1	100	96.011	ENSGAGG00000022217	UPF1	100	96.011	Gopherus_agassizii
ENSLAFG00000014963	UPF1	93	98.192	ENSGGOG00000002608	UPF1	99	98.192	Gorilla_gorilla
ENSLAFG00000014963	UPF1	87	97.436	ENSHBUG00000008939	upf1	95	97.436	Haplochromis_burtoni
ENSLAFG00000014963	UPF1	90	83.908	ENSHBUG00000014694	upf1	100	83.908	Haplochromis_burtoni
ENSLAFG00000014963	UPF1	100	98.230	ENSHGLG00000010900	UPF1	100	98.230	Heterocephalus_glaber_female
ENSLAFG00000014963	UPF1	96	94.664	ENSHGLG00100005904	UPF1	99	94.664	Heterocephalus_glaber_male
ENSLAFG00000014963	UPF1	100	90.434	ENSHCOG00000008918	upf1	100	92.440	Hippocampus_comes
ENSLAFG00000014963	UPF1	100	92.566	ENSIPUG00000005108	UPF1	100	92.920	Ictalurus_punctatus
ENSLAFG00000014963	UPF1	100	98.316	ENSSTOG00000009196	UPF1	100	98.316	Ictidomys_tridecemlineatus
ENSLAFG00000014963	UPF1	100	97.961	ENSJJAG00000023151	Upf1	100	97.961	Jaculus_jaculus
ENSLAFG00000014963	UPF1	100	91.327	ENSKMAG00000004962	upf1	100	91.239	Kryptolebias_marmoratus
ENSLAFG00000014963	UPF1	100	91.416	ENSLBEG00000027848	-	100	91.416	Labrus_bergylta
ENSLAFG00000014963	UPF1	100	88.462	ENSLBEG00000014862	upf1	100	89.598	Labrus_bergylta
ENSLAFG00000014963	UPF1	62	96.700	ENSLACG00000008482	UPF1	100	96.700	Latimeria_chalumnae
ENSLAFG00000014963	UPF1	100	93.977	ENSLOCG00000002072	upf1	100	93.977	Lepisosteus_oculatus
ENSLAFG00000014963	UPF1	100	98.761	ENSMFAG00000037748	UPF1	100	98.761	Macaca_fascicularis
ENSLAFG00000014963	UPF1	100	98.761	ENSMMUG00000023286	UPF1	100	98.761	Macaca_mulatta
ENSLAFG00000014963	UPF1	100	98.761	ENSMNEG00000000046	UPF1	100	98.761	Macaca_nemestrina
ENSLAFG00000014963	UPF1	93	99.239	ENSMLEG00000028404	UPF1	99	99.239	Mandrillus_leucophaeus
ENSLAFG00000014963	UPF1	100	88.743	ENSMAMG00000006229	upf1	100	89.791	Mastacembelus_armatus
ENSLAFG00000014963	UPF1	100	90.619	ENSMAMG00000006231	-	100	91.062	Mastacembelus_armatus
ENSLAFG00000014963	UPF1	100	91.231	ENSMZEG00005016386	-	100	91.143	Maylandia_zebra
ENSLAFG00000014963	UPF1	100	88.840	ENSMZEG00005003489	upf1	100	90.096	Maylandia_zebra
ENSLAFG00000014963	UPF1	93	97.338	ENSMGAG00000004745	UPF1	100	97.338	Meleagris_gallopavo
ENSLAFG00000014963	UPF1	97	95.978	ENSMAUG00000011398	Upf1	97	97.026	Mesocricetus_auratus
ENSLAFG00000014963	UPF1	100	97.788	ENSMICG00000001659	UPF1	100	97.788	Microcebus_murinus
ENSLAFG00000014963	UPF1	100	97.965	ENSMOCG00000005699	Upf1	100	97.965	Microtus_ochrogaster
ENSLAFG00000014963	UPF1	100	89.628	ENSMMOG00000007881	upf1	100	90.080	Mola_mola
ENSLAFG00000014963	UPF1	93	90.909	ENSMMOG00000007537	-	99	91.004	Mola_mola
ENSLAFG00000014963	UPF1	100	97.617	ENSMODG00000003689	UPF1	100	97.617	Monodelphis_domestica
ENSLAFG00000014963	UPF1	100	89.805	ENSMALG00000000144	upf1	100	90.248	Monopterus_albus
ENSLAFG00000014963	UPF1	100	90.132	ENSMALG00000018100	-	100	90.132	Monopterus_albus
ENSLAFG00000014963	UPF1	100	98.053	MGP_CAROLIEiJ_G0031142	Upf1	100	98.053	Mus_caroli
ENSLAFG00000014963	UPF1	100	98.053	ENSMUSG00000058301	Upf1	100	98.053	Mus_musculus
ENSLAFG00000014963	UPF1	100	98.053	MGP_PahariEiJ_G0021607	Upf1	100	98.053	Mus_pahari
ENSLAFG00000014963	UPF1	100	98.053	MGP_SPRETEiJ_G0032260	Upf1	100	98.053	Mus_spretus
ENSLAFG00000014963	UPF1	100	97.788	ENSMPUG00000015516	UPF1	100	97.788	Mustela_putorius_furo
ENSLAFG00000014963	UPF1	99	97.513	ENSMLUG00000012122	UPF1	99	97.513	Myotis_lucifugus
ENSLAFG00000014963	UPF1	100	98.319	ENSNGAG00000024107	Upf1	100	98.319	Nannospalax_galili
ENSLAFG00000014963	UPF1	100	88.564	ENSNBRG00000000670	upf1	100	88.614	Neolamprologus_brichardi
ENSLAFG00000014963	UPF1	100	88.966	ENSNBRG00000022069	-	100	92.308	Neolamprologus_brichardi
ENSLAFG00000014963	UPF1	93	93.435	ENSNLEG00000006062	UPF1	99	93.435	Nomascus_leucogenys
ENSLAFG00000014963	UPF1	83	93.333	ENSMEUG00000014146	-	83	93.333	Notamacropus_eugenii
ENSLAFG00000014963	UPF1	93	90.485	ENSOPRG00000014018	UPF1	99	90.485	Ochotona_princeps
ENSLAFG00000014963	UPF1	100	97.163	ENSODEG00000012426	UPF1	100	97.163	Octodon_degus
ENSLAFG00000014963	UPF1	100	91.320	ENSONIG00000012729	-	100	91.231	Oreochromis_niloticus
ENSLAFG00000014963	UPF1	100	89.102	ENSONIG00000010452	upf1	100	90.359	Oreochromis_niloticus
ENSLAFG00000014963	UPF1	100	96.649	ENSOANG00000004568	UPF1	100	96.649	Ornithorhynchus_anatinus
ENSLAFG00000014963	UPF1	100	91.239	ENSORLG00000008453	upf1	100	91.239	Oryzias_latipes
ENSLAFG00000014963	UPF1	100	91.158	ENSORLG00020014758	upf1	100	91.158	Oryzias_latipes_hni
ENSLAFG00000014963	UPF1	100	91.158	ENSORLG00015010165	upf1	100	91.158	Oryzias_latipes_hsok
ENSLAFG00000014963	UPF1	100	91.327	ENSOMEG00000003665	upf1	100	91.239	Oryzias_melastigma
ENSLAFG00000014963	UPF1	100	97.699	ENSOGAG00000012866	UPF1	100	97.699	Otolemur_garnettii
ENSLAFG00000014963	UPF1	96	96.869	ENSOARG00000010739	UPF1	100	96.869	Ovis_aries
ENSLAFG00000014963	UPF1	95	98.410	ENSPPAG00000043884	UPF1	97	98.410	Pan_paniscus
ENSLAFG00000014963	UPF1	100	98.673	ENSPPRG00000023470	UPF1	100	98.673	Panthera_pardus
ENSLAFG00000014963	UPF1	93	96.011	ENSPTIG00000010159	UPF1	99	96.011	Panthera_tigris_altaica
ENSLAFG00000014963	UPF1	100	98.761	ENSPTRG00000010721	UPF1	100	98.761	Pan_troglodytes
ENSLAFG00000014963	UPF1	100	98.761	ENSPANG00000008847	UPF1	100	98.761	Papio_anubis
ENSLAFG00000014963	UPF1	94	91.674	ENSPKIG00000006069	upf1	99	91.581	Paramormyrops_kingsleyae
ENSLAFG00000014963	UPF1	68	97.255	ENSPSIG00000009491	UPF1	100	97.255	Pelodiscus_sinensis
ENSLAFG00000014963	UPF1	100	88.438	ENSPMGG00000017327	upf1	100	88.556	Periophthalmus_magnuspinnatus
ENSLAFG00000014963	UPF1	100	98.142	ENSPEMG00000001085	Upf1	100	98.142	Peromyscus_maniculatus_bairdii
ENSLAFG00000014963	UPF1	100	86.537	ENSPMAG00000001206	upf1	100	86.408	Petromyzon_marinus
ENSLAFG00000014963	UPF1	100	97.080	ENSPCIG00000006156	UPF1	100	97.080	Phascolarctos_cinereus
ENSLAFG00000014963	UPF1	100	88.411	ENSPLAG00000018155	-	100	88.323	Poecilia_latipinna
ENSLAFG00000014963	UPF1	100	90.965	ENSPLAG00000016232	-	100	90.877	Poecilia_latipinna
ENSLAFG00000014963	UPF1	100	88.948	ENSPMEG00000011443	-	100	88.859	Poecilia_mexicana
ENSLAFG00000014963	UPF1	100	91.054	ENSPMEG00000016319	-	100	90.965	Poecilia_mexicana
ENSLAFG00000014963	UPF1	100	90.788	ENSPREG00000011247	-	100	90.700	Poecilia_reticulata
ENSLAFG00000014963	UPF1	100	88.850	ENSPREG00000009940	upf1	100	88.850	Poecilia_reticulata
ENSLAFG00000014963	UPF1	100	93.805	ENSPPYG00000009752	UPF1	100	93.805	Pongo_abelii
ENSLAFG00000014963	UPF1	76	100.000	ENSPCAG00000012962	UPF1	76	100.000	Procavia_capensis
ENSLAFG00000014963	UPF1	100	98.673	ENSPCOG00000023813	UPF1	100	98.673	Propithecus_coquereli
ENSLAFG00000014963	UPF1	69	97.436	ENSPVAG00000003183	UPF1	69	97.436	Pteropus_vampyrus
ENSLAFG00000014963	UPF1	100	91.231	ENSPNYG00000016731	-	100	91.143	Pundamilia_nyererei
ENSLAFG00000014963	UPF1	100	88.840	ENSPNYG00000003694	upf1	100	90.096	Pundamilia_nyererei
ENSLAFG00000014963	UPF1	100	92.301	ENSPNAG00000025614	upf1	100	92.743	Pygocentrus_nattereri
ENSLAFG00000014963	UPF1	100	98.053	ENSRNOG00000020134	Upf1	100	98.053	Rattus_norvegicus
ENSLAFG00000014963	UPF1	96	95.088	ENSRBIG00000013894	UPF1	98	97.835	Rhinopithecus_bieti
ENSLAFG00000014963	UPF1	95	98.410	ENSRROG00000040935	UPF1	99	98.410	Rhinopithecus_roxellana
ENSLAFG00000014963	UPF1	75	55.012	YMR080C	NAM7	82	57.108	Saccharomyces_cerevisiae
ENSLAFG00000014963	UPF1	95	97.761	ENSSBOG00000023632	UPF1	98	97.761	Saimiri_boliviensis_boliviensis
ENSLAFG00000014963	UPF1	93	98.481	ENSSHAG00000010499	UPF1	100	98.481	Sarcophilus_harrisii
ENSLAFG00000014963	UPF1	100	94.331	ENSSFOG00015021095	upf1	99	96.205	Scleropages_formosus
ENSLAFG00000014963	UPF1	100	88.112	ENSSMAG00000005055	upf1	100	88.899	Scophthalmus_maximus
ENSLAFG00000014963	UPF1	100	91.327	ENSSMAG00000021018	-	100	91.327	Scophthalmus_maximus
ENSLAFG00000014963	UPF1	100	89.005	ENSSDUG00000013320	upf1	100	89.878	Seriola_dumerili
ENSLAFG00000014963	UPF1	100	91.593	ENSSDUG00000009629	-	100	91.593	Seriola_dumerili
ENSLAFG00000014963	UPF1	100	89.789	ENSSLDG00000020868	upf1	100	90.158	Seriola_lalandi_dorsalis
ENSLAFG00000014963	UPF1	100	91.593	ENSSLDG00000006878	-	100	91.593	Seriola_lalandi_dorsalis
ENSLAFG00000014963	UPF1	100	95.745	ENSSPUG00000010538	UPF1	100	95.745	Sphenodon_punctatus
ENSLAFG00000014963	UPF1	100	88.308	ENSSPAG00000000003	upf1	100	88.251	Stegastes_partitus
ENSLAFG00000014963	UPF1	100	91.585	ENSSPAG00000011521	-	100	91.497	Stegastes_partitus
ENSLAFG00000014963	UPF1	100	98.670	ENSSSCG00000039301	UPF1	100	98.670	Sus_scrofa
ENSLAFG00000014963	UPF1	83	90.319	ENSTGUG00000001057	UPF1	100	95.569	Taeniopygia_guttata
ENSLAFG00000014963	UPF1	100	89.539	ENSTRUG00000000150	upf1	100	89.539	Takifugu_rubripes
ENSLAFG00000014963	UPF1	100	89.903	ENSTRUG00000005131	-	100	90.345	Takifugu_rubripes
ENSLAFG00000014963	UPF1	100	93.706	ENSTTRG00000011544	UPF1	100	93.440	Tursiops_truncatus
ENSLAFG00000014963	UPF1	100	97.699	ENSUAMG00000007093	UPF1	100	97.699	Ursus_americanus
ENSLAFG00000014963	UPF1	95	98.408	ENSUMAG00000006652	UPF1	99	98.408	Ursus_maritimus
ENSLAFG00000014963	UPF1	100	97.788	ENSVVUG00000007797	UPF1	100	97.788	Vulpes_vulpes
ENSLAFG00000014963	UPF1	100	82.115	ENSXETG00000013602	upf1	100	81.674	Xenopus_tropicalis
ENSLAFG00000014963	UPF1	92	93.186	ENSXCOG00000005764	-	100	93.186	Xiphophorus_couchianus
ENSLAFG00000014963	UPF1	97	88.736	ENSXCOG00000015275	-	96	88.645	Xiphophorus_couchianus
ENSLAFG00000014963	UPF1	100	90.877	ENSXMAG00000002540	-	100	90.788	Xiphophorus_maculatus
ENSLAFG00000014963	UPF1	100	88.928	ENSXMAG00000001703	-	100	88.840	Xiphophorus_maculatus