EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLAFG00000015426 (Gene tree)
Gene ID: -
Gene Symbol: XRN1
Alias: SEP1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Loxodonta_africana
Status: putative
Strand: Plus strand
Length: 55184 bases
Position: chrscaffold_41:17241763-17296946
Accession: 30654
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLAFP00000018100	XRN_N	PF03159.18	8.3e-98	1	1
ENSLAFP00000012933	XRN_N	PF03159.18	1.7e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLAFT00000035546	XRN1-202	2019	-	ENSLAFP00000018100	673 (aa)	-	G3TR92
ENSLAFT00000015436	XRN1-201	3201	-	ENSLAFP00000012933	1067 (aa)	-	G3TF54

Gene Model

Click here to download ENSLAFG00000015426's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLAFG00000015426's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLAFG00000015426	XRN1	100	41.185	ENSLAFG00000014624	XRN2	71	41.329

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLAFG00000015426	XRN1	100	95.978	ENSG00000114127	XRN1	100	98.788	Homo_sapiens
ENSLAFG00000015426	XRN1	99	73.571	ENSAPOG00000000622	xrn1	93	76.496	Acanthochromis_polyacanthus
ENSLAFG00000015426	XRN1	100	96.175	ENSAMEG00000012538	XRN1	62	96.175	Ailuropoda_melanoleuca
ENSLAFG00000015426	XRN1	99	73.458	ENSACIG00000001057	xrn1	65	73.585	Amphilophus_citrinellus
ENSLAFG00000015426	XRN1	99	73.102	ENSAOCG00000014097	xrn1	84	85.246	Amphiprion_ocellaris
ENSLAFG00000015426	XRN1	99	73.290	ENSAPEG00000006620	xrn1	68	73.510	Amphiprion_percula
ENSLAFG00000015426	XRN1	99	71.001	ENSATEG00000009752	xrn1	67	71.671	Anabas_testudineus
ENSLAFG00000015426	XRN1	98	85.523	ENSAPLG00000004905	XRN1	61	85.523	Anas_platyrhynchos
ENSLAFG00000015426	XRN1	100	83.645	ENSACAG00000004985	XRN1	60	83.551	Anolis_carolinensis
ENSLAFG00000015426	XRN1	100	96.258	ENSANAG00000029013	XRN1	94	95.416	Aotus_nancymaae
ENSLAFG00000015426	XRN1	99	73.364	ENSACLG00000004806	xrn1	62	73.679	Astatotilapia_calliptera
ENSLAFG00000015426	XRN1	99	71.656	ENSAMXG00000019370	xrn1	95	94.175	Astyanax_mexicanus
ENSLAFG00000015426	XRN1	100	94.949	ENSBTAG00000011524	XRN1	63	94.949	Bos_taurus
ENSLAFG00000015426	XRN1	100	49.365	WBGene00012730	xrn-1	71	40.830	Caenorhabditis_elegans
ENSLAFG00000015426	XRN1	100	95.978	ENSCJAG00000001872	XRN1	65	95.978	Callithrix_jacchus
ENSLAFG00000015426	XRN1	100	96.445	ENSCAFG00000007783	XRN1	62	96.445	Canis_familiaris
ENSLAFG00000015426	XRN1	100	96.445	ENSCAFG00020009120	XRN1	99	93.354	Canis_lupus_dingo
ENSLAFG00000015426	XRN1	100	95.323	ENSCHIG00000019192	XRN1	62	95.323	Capra_hircus
ENSLAFG00000015426	XRN1	100	95.790	ENSTSYG00000002705	XRN1	63	95.790	Carlito_syrichta
ENSLAFG00000015426	XRN1	78	97.653	ENSCAPG00000004604	-	99	76.451	Cavia_aperea
ENSLAFG00000015426	XRN1	100	96.352	ENSCCAG00000034800	XRN1	99	97.297	Cebus_capucinus
ENSLAFG00000015426	XRN1	100	96.258	ENSCATG00000041794	XRN1	63	96.258	Cercocebus_atys
ENSLAFG00000015426	XRN1	100	95.136	ENSCLAG00000001451	XRN1	99	95.548	Chinchilla_lanigera
ENSLAFG00000015426	XRN1	100	96.352	ENSCSAG00000011265	XRN1	63	96.352	Chlorocebus_sabaeus
ENSLAFG00000015426	XRN1	78	49.434	ENSCING00000001334	-	95	70.109	Ciona_intestinalis
ENSLAFG00000015426	XRN1	99	54.135	ENSCSAVG00000008584	-	76	50.847	Ciona_savignyi
ENSLAFG00000015426	XRN1	100	96.352	ENSCANG00000037495	XRN1	99	97.138	Colobus_angolensis_palliatus
ENSLAFG00000015426	XRN1	100	94.294	ENSCGRG00001019411	Xrn1	99	95.548	Cricetulus_griseus_chok1gshd
ENSLAFG00000015426	XRN1	100	94.294	ENSCGRG00000012464	Xrn1	99	95.548	Cricetulus_griseus_crigri
ENSLAFG00000015426	XRN1	99	70.467	ENSCSEG00000021285	xrn1	94	95.192	Cynoglossus_semilaevis
ENSLAFG00000015426	XRN1	99	68.563	ENSCVAG00000013089	xrn1	92	72.091	Cyprinodon_variegatus
ENSLAFG00000015426	XRN1	99	75.094	ENSDARG00000091652	xrn1	98	79.915	Danio_rerio
ENSLAFG00000015426	XRN1	100	93.920	ENSDORG00000013833	Xrn1	62	93.920	Dipodomys_ordii
ENSLAFG00000015426	XRN1	100	47.994	FBgn0020261	pcm	62	42.559	Drosophila_melanogaster
ENSLAFG00000015426	XRN1	85	99.194	ENSETEG00000003978	XRN1	54	99.194	Echinops_telfairi
ENSLAFG00000015426	XRN1	100	95.510	ENSEASG00005002687	XRN1	99	96.343	Equus_asinus_asinus
ENSLAFG00000015426	XRN1	100	95.603	ENSECAG00000008301	XRN1	63	95.603	Equus_caballus
ENSLAFG00000015426	XRN1	96	82.893	ENSEEUG00000011323	XRN1	60	82.893	Erinaceus_europaeus
ENSLAFG00000015426	XRN1	99	74.227	ENSELUG00000000169	xrn1	61	74.078	Esox_lucius
ENSLAFG00000015426	XRN1	100	89.159	ENSFCAG00000027589	XRN1	99	95.824	Felis_catus
ENSLAFG00000015426	XRN1	100	85.487	ENSFALG00000007021	XRN1	60	85.487	Ficedula_albicollis
ENSLAFG00000015426	XRN1	100	94.761	ENSFDAG00000020494	XRN1	99	95.072	Fukomys_damarensis
ENSLAFG00000015426	XRN1	68	84.314	ENSFHEG00000017356	-	93	84.516	Fundulus_heteroclitus
ENSLAFG00000015426	XRN1	100	69.841	ENSGMOG00000006396	xrn1	62	69.347	Gadus_morhua
ENSLAFG00000015426	XRN1	100	86.142	ENSGALG00000002706	XRN1	60	86.142	Gallus_gallus
ENSLAFG00000015426	XRN1	99	71.922	ENSGACG00000014328	xrn1	61	71.846	Gasterosteus_aculeatus
ENSLAFG00000015426	XRN1	100	86.342	ENSGAGG00000017535	XRN1	64	86.342	Gopherus_agassizii
ENSLAFG00000015426	XRN1	100	95.884	ENSGGOG00000008047	XRN1	63	95.884	Gorilla_gorilla
ENSLAFG00000015426	XRN1	99	72.523	ENSHBUG00000005908	xrn1	98	73.347	Haplochromis_burtoni
ENSLAFG00000015426	XRN1	100	95.884	ENSHGLG00000014476	XRN1	99	96.184	Heterocephalus_glaber_female
ENSLAFG00000015426	XRN1	100	95.884	ENSHGLG00100015130	XRN1	99	96.184	Heterocephalus_glaber_male
ENSLAFG00000015426	XRN1	99	73.414	ENSHCOG00000014062	xrn1	66	73.164	Hippocampus_comes
ENSLAFG00000015426	XRN1	99	73.946	ENSIPUG00000015229	xrn1	63	73.888	Ictalurus_punctatus
ENSLAFG00000015426	XRN1	100	96.913	ENSSTOG00000013552	XRN1	99	97.297	Ictidomys_tridecemlineatus
ENSLAFG00000015426	XRN1	98	94.151	ENSJJAG00000010863	Xrn1	99	93.387	Jaculus_jaculus
ENSLAFG00000015426	XRN1	100	71.242	ENSKMAG00000021356	xrn1	94	76.371	Kryptolebias_marmoratus
ENSLAFG00000015426	XRN1	99	72.915	ENSLBEG00000018656	xrn1	97	96.117	Labrus_bergylta
ENSLAFG00000015426	XRN1	100	80.543	ENSLACG00000009020	XRN1	61	80.543	Latimeria_chalumnae
ENSLAFG00000015426	XRN1	100	77.664	ENSLOCG00000007944	xrn1	62	77.230	Lepisosteus_oculatus
ENSLAFG00000015426	XRN1	100	96.258	ENSMFAG00000032599	XRN1	63	96.258	Macaca_fascicularis
ENSLAFG00000015426	XRN1	100	96.258	ENSMMUG00000014038	XRN1	63	96.258	Macaca_mulatta
ENSLAFG00000015426	XRN1	100	96.165	ENSMNEG00000034217	XRN1	63	96.165	Macaca_nemestrina
ENSLAFG00000015426	XRN1	79	72.097	ENSMLEG00000041349	-	99	96.035	Mandrillus_leucophaeus
ENSLAFG00000015426	XRN1	99	73.783	ENSMAMG00000013219	xrn1	94	77.002	Mastacembelus_armatus
ENSLAFG00000015426	XRN1	99	73.271	ENSMZEG00005015099	xrn1	62	73.585	Maylandia_zebra
ENSLAFG00000015426	XRN1	98	83.828	ENSMGAG00000006333	XRN1	61	83.828	Meleagris_gallopavo
ENSLAFG00000015426	XRN1	100	96.071	ENSMICG00000048948	XRN1	96	100.000	Microcebus_murinus
ENSLAFG00000015426	XRN1	92	94.118	ENSMOCG00000008665	Xrn1	99	94.118	Microtus_ochrogaster
ENSLAFG00000015426	XRN1	83	58.014	ENSMMOG00000020896	-	96	68.022	Mola_mola
ENSLAFG00000015426	XRN1	100	89.429	ENSMODG00000021236	XRN1	62	89.045	Monodelphis_domestica
ENSLAFG00000015426	XRN1	99	69.036	ENSMALG00000004098	xrn1	62	68.366	Monopterus_albus
ENSLAFG00000015426	XRN1	92	94.612	MGP_CAROLIEiJ_G0032535	Xrn1	100	100.000	Mus_caroli
ENSLAFG00000015426	XRN1	100	93.639	ENSMUSG00000032410	Xrn1	100	100.000	Mus_musculus
ENSLAFG00000015426	XRN1	100	93.826	MGP_PahariEiJ_G0015404	Xrn1	100	100.000	Mus_pahari
ENSLAFG00000015426	XRN1	100	93.826	MGP_SPRETEiJ_G0033678	Xrn1	100	100.000	Mus_spretus
ENSLAFG00000015426	XRN1	100	96.352	ENSMPUG00000012040	XRN1	63	96.352	Mustela_putorius_furo
ENSLAFG00000015426	XRN1	99	94.792	ENSMLUG00000016885	XRN1	61	94.792	Myotis_lucifugus
ENSLAFG00000015426	XRN1	92	91.256	ENSNGAG00000023964	Xrn1	99	91.256	Nannospalax_galili
ENSLAFG00000015426	XRN1	100	96.165	ENSNLEG00000004726	XRN1	63	96.165	Nomascus_leucogenys
ENSLAFG00000015426	XRN1	99	73.433	ENSONIG00000016673	xrn1	70	74.032	Oreochromis_niloticus
ENSLAFG00000015426	XRN1	87	86.066	ENSOANG00000006735	XRN1	59	86.066	Ornithorhynchus_anatinus
ENSLAFG00000015426	XRN1	100	95.884	ENSOCUG00000001861	XRN1	61	95.884	Oryctolagus_cuniculus
ENSLAFG00000015426	XRN1	99	74.157	ENSORLG00000013005	xrn1	64	73.491	Oryzias_latipes
ENSLAFG00000015426	XRN1	99	73.876	ENSORLG00020005559	xrn1	64	73.510	Oryzias_latipes_hni
ENSLAFG00000015426	XRN1	99	73.596	ENSORLG00015022523	xrn1	66	73.226	Oryzias_latipes_hsok
ENSLAFG00000015426	XRN1	99	73.502	ENSOMEG00000015397	xrn1	67	73.251	Oryzias_melastigma
ENSLAFG00000015426	XRN1	100	92.797	ENSOGAG00000000170	XRN1	63	92.797	Otolemur_garnettii
ENSLAFG00000015426	XRN1	100	95.416	ENSOARG00000006343	XRN1	63	95.416	Ovis_aries
ENSLAFG00000015426	XRN1	100	95.884	ENSPPAG00000010180	XRN1	63	95.884	Pan_paniscus
ENSLAFG00000015426	XRN1	100	95.981	ENSPPRG00000007125	XRN1	63	95.981	Panthera_pardus
ENSLAFG00000015426	XRN1	100	95.981	ENSPTIG00000021081	XRN1	63	95.981	Panthera_tigris_altaica
ENSLAFG00000015426	XRN1	100	95.884	ENSPTRG00000015482	XRN1	63	95.884	Pan_troglodytes
ENSLAFG00000015426	XRN1	100	96.258	ENSPANG00000010638	XRN1	63	96.258	Papio_anubis
ENSLAFG00000015426	XRN1	100	86.300	ENSPSIG00000018050	XRN1	61	86.300	Pelodiscus_sinensis
ENSLAFG00000015426	XRN1	90	77.080	ENSPMGG00000002648	xrn1	98	76.526	Periophthalmus_magnuspinnatus
ENSLAFG00000015426	XRN1	92	95.072	ENSPEMG00000020610	Xrn1	99	95.072	Peromyscus_maniculatus_bairdii
ENSLAFG00000015426	XRN1	94	57.143	ENSPMAG00000002975	xrn1	85	78.161	Petromyzon_marinus
ENSLAFG00000015426	XRN1	100	89.242	ENSPCIG00000028735	XRN1	99	88.694	Phascolarctos_cinereus
ENSLAFG00000015426	XRN1	99	73.346	ENSPFOG00000013932	xrn1	68	73.283	Poecilia_formosa
ENSLAFG00000015426	XRN1	99	73.596	ENSPLAG00000021653	xrn1	68	73.629	Poecilia_latipinna
ENSLAFG00000015426	XRN1	99	73.271	ENSPMEG00000003076	xrn1	67	73.233	Poecilia_mexicana
ENSLAFG00000015426	XRN1	99	73.228	ENSPREG00000021147	xrn1	64	71.201	Poecilia_reticulata
ENSLAFG00000015426	XRN1	100	95.978	ENSPPYG00000014172	XRN1	63	95.978	Pongo_abelii
ENSLAFG00000015426	XRN1	98	89.251	ENSPCAG00000005638	XRN1	68	89.251	Procavia_capensis
ENSLAFG00000015426	XRN1	100	96.165	ENSPCOG00000013089	XRN1	99	96.661	Propithecus_coquereli
ENSLAFG00000015426	XRN1	100	90.739	ENSPVAG00000016265	XRN1	63	90.739	Pteropus_vampyrus
ENSLAFG00000015426	XRN1	99	73.346	ENSPNYG00000010570	xrn1	63	73.471	Pundamilia_nyererei
ENSLAFG00000015426	XRN1	100	71.256	ENSPNAG00000023531	xrn1	64	71.256	Pygocentrus_nattereri
ENSLAFG00000015426	XRN1	100	93.545	ENSRNOG00000042951	Xrn1	62	93.545	Rattus_norvegicus
ENSLAFG00000015426	XRN1	100	95.978	ENSRBIG00000041227	XRN1	63	95.978	Rhinopithecus_bieti
ENSLAFG00000015426	XRN1	79	72.045	ENSRROG00000033764	-	100	100.000	Rhinopithecus_roxellana
ENSLAFG00000015426	XRN1	93	54.768	YGL173C	XRN1	64	54.768	Saccharomyces_cerevisiae
ENSLAFG00000015426	XRN1	100	96.165	ENSSBOG00000029561	XRN1	63	96.165	Saimiri_boliviensis_boliviensis
ENSLAFG00000015426	XRN1	98	89.176	ENSSHAG00000016207	XRN1	62	88.782	Sarcophilus_harrisii
ENSLAFG00000015426	XRN1	100	73.807	ENSSFOG00015024211	xrn1	64	73.958	Scleropages_formosus
ENSLAFG00000015426	XRN1	99	73.901	ENSSMAG00000016534	xrn1	66	73.938	Scophthalmus_maximus
ENSLAFG00000015426	XRN1	99	72.872	ENSSDUG00000010306	xrn1	67	72.805	Seriola_dumerili
ENSLAFG00000015426	XRN1	99	73.340	ENSSLDG00000021543	xrn1	67	73.371	Seriola_lalandi_dorsalis
ENSLAFG00000015426	XRN1	91	84.814	ENSSARG00000007741	-	71	84.814	Sorex_araneus
ENSLAFG00000015426	XRN1	81	68.450	ENSSPUG00000010779	-	95	86.555	Sphenodon_punctatus
ENSLAFG00000015426	XRN1	82	63.375	ENSSPAG00000009856	-	96	76.626	Stegastes_partitus
ENSLAFG00000015426	XRN1	100	85.300	ENSTGUG00000008498	XRN1	62	85.300	Taeniopygia_guttata
ENSLAFG00000015426	XRN1	99	71.536	ENSTRUG00000004895	xrn1	99	76.240	Takifugu_rubripes
ENSLAFG00000015426	XRN1	99	69.145	ENSTNIG00000017615	xrn1	63	69.476	Tetraodon_nigroviridis
ENSLAFG00000015426	XRN1	93	86.762	ENSTBEG00000003256	XRN1	61	86.762	Tupaia_belangeri
ENSLAFG00000015426	XRN1	100	93.732	ENSTTRG00000012914	XRN1	63	93.732	Tursiops_truncatus
ENSLAFG00000015426	XRN1	100	93.639	ENSUAMG00000001608	XRN1	99	93.143	Ursus_americanus
ENSLAFG00000015426	XRN1	100	96.632	ENSUMAG00000013625	XRN1	63	96.632	Ursus_maritimus
ENSLAFG00000015426	XRN1	100	95.510	ENSVPAG00000004690	XRN1	63	95.510	Vicugna_pacos
ENSLAFG00000015426	XRN1	100	96.726	ENSVVUG00000024461	XRN1	99	97.138	Vulpes_vulpes
ENSLAFG00000015426	XRN1	100	80.561	ENSXETG00000000619	xrn1	97	88.710	Xenopus_tropicalis
ENSLAFG00000015426	XRN1	100	73.178	ENSXCOG00000007917	xrn1	63	73.226	Xiphophorus_couchianus
ENSLAFG00000015426	XRN1	100	72.710	ENSXMAG00000018320	xrn1	66	72.753	Xiphophorus_maculatus