EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLAFG00000015452 (Gene tree)
Gene ID: -
Gene Symbol: TRUB1
Alias: PUS4
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Loxodonta_africana
Status: putative
Strand: Minus strand
Length: 26174 bases
Position: chrscaffold_10:4142151-4168324
Accession: 16060
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLAFP00000012946	TruB_N	PF01509.18	1.9e-51	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLAFT00000015450	TRUB1-201	1053	-	ENSLAFP00000012946	350 (aa)	-	G3TF65

Gene Model

Click here to download ENSLAFG00000015452's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLAFG00000015452's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLAFG00000015452	TRUB1	56	35.678	ENSLAFG00000002174	TRUB2	65	35.678

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLAFG00000015452	TRUB1	100	79.609	ENSG00000165832	TRUB1	100	79.050	Homo_sapiens
ENSLAFG00000015452	TRUB1	70	68.163	ENSAPOG00000020565	trub1	93	66.667	Acanthochromis_polyacanthus
ENSLAFG00000015452	TRUB1	86	84.437	ENSAMEG00000014931	TRUB1	99	79.387	Ailuropoda_melanoleuca
ENSLAFG00000015452	TRUB1	71	62.000	ENSACIG00000003060	trub1	83	62.000	Amphilophus_citrinellus
ENSLAFG00000015452	TRUB1	70	68.163	ENSAOCG00000017188	trub1	91	67.200	Amphiprion_ocellaris
ENSLAFG00000015452	TRUB1	71	66.800	ENSAPEG00000015209	trub1	91	66.800	Amphiprion_percula
ENSLAFG00000015452	TRUB1	69	69.295	ENSATEG00000023291	trub1	86	69.295	Anabas_testudineus
ENSLAFG00000015452	TRUB1	80	72.760	ENSAPLG00000006808	TRUB1	91	76.285	Anas_platyrhynchos
ENSLAFG00000015452	TRUB1	77	69.888	ENSACAG00000009282	TRUB1	92	71.765	Anolis_carolinensis
ENSLAFG00000015452	TRUB1	100	80.168	ENSANAG00000022870	TRUB1	100	79.330	Aotus_nancymaae
ENSLAFG00000015452	TRUB1	75	65.649	ENSACLG00000000823	trub1	91	67.063	Astatotilapia_calliptera
ENSLAFG00000015452	TRUB1	77	64.925	ENSAMXG00000015845	trub1	87	65.385	Astyanax_mexicanus
ENSLAFG00000015452	TRUB1	86	85.333	ENSBTAG00000012955	TRUB1	99	79.050	Bos_taurus
ENSLAFG00000015452	TRUB1	100	80.168	ENSCJAG00000047815	TRUB1	100	79.330	Callithrix_jacchus
ENSLAFG00000015452	TRUB1	99	81.793	ENSCAFG00000011688	TRUB1	99	78.151	Canis_familiaris
ENSLAFG00000015452	TRUB1	99	81.793	ENSCAFG00020013237	TRUB1	99	78.431	Canis_lupus_dingo
ENSLAFG00000015452	TRUB1	86	85.333	ENSCHIG00000020884	TRUB1	99	78.431	Capra_hircus
ENSLAFG00000015452	TRUB1	100	77.374	ENSTSYG00000000446	TRUB1	100	77.654	Carlito_syrichta
ENSLAFG00000015452	TRUB1	75	73.946	ENSCAPG00000017088	TRUB1	100	72.797	Cavia_aperea
ENSLAFG00000015452	TRUB1	69	75.934	ENSCPOG00000030129	-	86	75.934	Cavia_porcellus
ENSLAFG00000015452	TRUB1	68	75.403	ENSCPOG00000040236	-	100	77.236	Cavia_porcellus
ENSLAFG00000015452	TRUB1	100	80.168	ENSCCAG00000028842	TRUB1	100	79.330	Cebus_capucinus
ENSLAFG00000015452	TRUB1	100	80.447	ENSCATG00000033431	TRUB1	100	79.609	Cercocebus_atys
ENSLAFG00000015452	TRUB1	68	78.455	ENSCLAG00000008664	TRUB1	100	78.455	Chinchilla_lanigera
ENSLAFG00000015452	TRUB1	100	80.726	ENSCSAG00000004891	TRUB1	100	79.888	Chlorocebus_sabaeus
ENSLAFG00000015452	TRUB1	99	67.797	ENSCHOG00000011931	TRUB1	99	67.232	Choloepus_hoffmanni
ENSLAFG00000015452	TRUB1	80	74.737	ENSCPBG00000003051	TRUB1	90	78.544	Chrysemys_picta_bellii
ENSLAFG00000015452	TRUB1	100	80.726	ENSCANG00000029445	TRUB1	100	79.888	Colobus_angolensis_palliatus
ENSLAFG00000015452	TRUB1	75	80.843	ENSCGRG00001016772	-	85	79.468	Cricetulus_griseus_chok1gshd
ENSLAFG00000015452	TRUB1	82	73.868	ENSCGRG00001010322	-	79	72.000	Cricetulus_griseus_chok1gshd
ENSLAFG00000015452	TRUB1	82	82.578	ENSCGRG00000010806	Trub1	90	80.667	Cricetulus_griseus_crigri
ENSLAFG00000015452	TRUB1	70	64.490	ENSCSEG00000011261	trub1	79	64.490	Cynoglossus_semilaevis
ENSLAFG00000015452	TRUB1	77	63.504	ENSCVAG00000008791	trub1	78	67.194	Cyprinodon_variegatus
ENSLAFG00000015452	TRUB1	79	63.538	ENSDARG00000053805	trub1	84	68.571	Danio_rerio
ENSLAFG00000015452	TRUB1	99	77.871	ENSDNOG00000001069	TRUB1	99	77.031	Dasypus_novemcinctus
ENSLAFG00000015452	TRUB1	99	77.620	ENSDORG00000010431	Trub1	99	76.771	Dipodomys_ordii
ENSLAFG00000015452	TRUB1	81	86.765	ENSETEG00000009183	TRUB1	81	87.255	Echinops_telfairi
ENSLAFG00000015452	TRUB1	86	85.000	ENSEASG00005014739	TRUB1	99	80.112	Equus_asinus_asinus
ENSLAFG00000015452	TRUB1	86	85.000	ENSECAG00000007177	TRUB1	99	80.112	Equus_caballus
ENSLAFG00000015452	TRUB1	99	65.753	ENSEEUG00000013993	TRUB1	100	65.301	Erinaceus_europaeus
ENSLAFG00000015452	TRUB1	73	67.704	ENSELUG00000000502	trub1	86	69.388	Esox_lucius
ENSLAFG00000015452	TRUB1	85	85.953	ENSFCAG00000031927	TRUB1	99	80.337	Felis_catus
ENSLAFG00000015452	TRUB1	67	74.894	ENSFALG00000002232	TRUB1	84	77.169	Ficedula_albicollis
ENSLAFG00000015452	TRUB1	67	80.083	ENSFDAG00000008140	TRUB1	99	80.083	Fukomys_damarensis
ENSLAFG00000015452	TRUB1	70	67.347	ENSFHEG00000004016	trub1	84	67.347	Fundulus_heteroclitus
ENSLAFG00000015452	TRUB1	80	70.968	ENSGALG00000009091	TRUB1	89	74.308	Gallus_gallus
ENSLAFG00000015452	TRUB1	69	64.754	ENSGAFG00000009193	trub1	86	63.934	Gambusia_affinis
ENSLAFG00000015452	TRUB1	56	68.718	ENSGACG00000015387	trub1	96	68.718	Gasterosteus_aculeatus
ENSLAFG00000015452	TRUB1	90	69.937	ENSGAGG00000009758	TRUB1	76	77.444	Gopherus_agassizii
ENSLAFG00000015452	TRUB1	100	80.168	ENSGGOG00000004583	TRUB1	100	79.609	Gorilla_gorilla
ENSLAFG00000015452	TRUB1	75	65.649	ENSHBUG00000016787	trub1	91	67.063	Haplochromis_burtoni
ENSLAFG00000015452	TRUB1	99	75.630	ENSHGLG00000015314	TRUB1	99	74.790	Heterocephalus_glaber_female
ENSLAFG00000015452	TRUB1	68	79.916	ENSHGLG00100009183	TRUB1	100	79.916	Heterocephalus_glaber_male
ENSLAFG00000015452	TRUB1	74	66.154	ENSHCOG00000017877	trub1	93	66.023	Hippocampus_comes
ENSLAFG00000015452	TRUB1	70	69.796	ENSIPUG00000017559	trub1	86	69.796	Ictalurus_punctatus
ENSLAFG00000015452	TRUB1	85	84.950	ENSSTOG00000003641	TRUB1	99	77.650	Ictidomys_tridecemlineatus
ENSLAFG00000015452	TRUB1	86	84.667	ENSJJAG00000011800	Trub1	86	83.667	Jaculus_jaculus
ENSLAFG00000015452	TRUB1	70	67.480	ENSKMAG00000006232	trub1	88	67.480	Kryptolebias_marmoratus
ENSLAFG00000015452	TRUB1	76	64.794	ENSLBEG00000026722	trub1	86	67.886	Labrus_bergylta
ENSLAFG00000015452	TRUB1	77	72.862	ENSLACG00000014885	TRUB1	86	75.000	Latimeria_chalumnae
ENSLAFG00000015452	TRUB1	75	71.374	ENSLOCG00000012979	trub1	86	72.332	Lepisosteus_oculatus
ENSLAFG00000015452	TRUB1	100	80.447	ENSMFAG00000031767	TRUB1	100	79.609	Macaca_fascicularis
ENSLAFG00000015452	TRUB1	100	80.726	ENSMMUG00000001902	TRUB1	100	79.888	Macaca_mulatta
ENSLAFG00000015452	TRUB1	100	77.095	ENSMNEG00000044646	TRUB1	100	76.257	Macaca_nemestrina
ENSLAFG00000015452	TRUB1	100	80.726	ENSMLEG00000042655	TRUB1	100	79.888	Mandrillus_leucophaeus
ENSLAFG00000015452	TRUB1	75	65.649	ENSMZEG00005024095	trub1	91	67.063	Maylandia_zebra
ENSLAFG00000015452	TRUB1	76	73.684	ENSMGAG00000011135	TRUB1	87	75.099	Meleagris_gallopavo
ENSLAFG00000015452	TRUB1	82	80.488	ENSMAUG00000011101	Trub1	86	78.667	Mesocricetus_auratus
ENSLAFG00000015452	TRUB1	99	80.112	ENSMICG00000016324	TRUB1	99	79.272	Microcebus_murinus
ENSLAFG00000015452	TRUB1	82	82.578	ENSMOCG00000017759	Trub1	89	80.667	Microtus_ochrogaster
ENSLAFG00000015452	TRUB1	84	79.522	ENSMODG00000009676	TRUB1	71	85.992	Monodelphis_domestica
ENSLAFG00000015452	TRUB1	99	74.785	MGP_CAROLIEiJ_G0023100	Trub1	96	78.512	Mus_caroli
ENSLAFG00000015452	TRUB1	99	73.639	ENSMUSG00000025086	Trub1	96	77.273	Mus_musculus
ENSLAFG00000015452	TRUB1	99	73.926	MGP_PahariEiJ_G0014588	Trub1	87	79.000	Mus_pahari
ENSLAFG00000015452	TRUB1	99	73.926	MGP_SPRETEiJ_G0024021	Trub1	96	77.273	Mus_spretus
ENSLAFG00000015452	TRUB1	86	85.667	ENSMPUG00000003556	TRUB1	99	80.112	Mustela_putorius_furo
ENSLAFG00000015452	TRUB1	95	80.000	ENSMLUG00000017686	TRUB1	100	78.348	Myotis_lucifugus
ENSLAFG00000015452	TRUB1	99	75.070	ENSNGAG00000018682	Trub1	84	81.333	Nannospalax_galili
ENSLAFG00000015452	TRUB1	70	67.886	ENSNBRG00000023393	trub1	88	67.886	Neolamprologus_brichardi
ENSLAFG00000015452	TRUB1	96	80.523	ENSNLEG00000016345	TRUB1	100	79.609	Nomascus_leucogenys
ENSLAFG00000015452	TRUB1	57	89.552	ENSMEUG00000006603	TRUB1	77	88.406	Notamacropus_eugenii
ENSLAFG00000015452	TRUB1	87	79.016	ENSOPRG00000009371	TRUB1	87	77.705	Ochotona_princeps
ENSLAFG00000015452	TRUB1	99	75.350	ENSODEG00000010854	TRUB1	99	73.950	Octodon_degus
ENSLAFG00000015452	TRUB1	74	66.023	ENSONIG00000007249	trub1	93	66.275	Oreochromis_niloticus
ENSLAFG00000015452	TRUB1	81	76.596	ENSOANG00000001556	TRUB1	85	79.537	Ornithorhynchus_anatinus
ENSLAFG00000015452	TRUB1	87	80.656	ENSOCUG00000009456	TRUB1	86	79.672	Oryctolagus_cuniculus
ENSLAFG00000015452	TRUB1	79	62.816	ENSORLG00000029719	trub1	92	65.759	Oryzias_latipes
ENSLAFG00000015452	TRUB1	79	62.455	ENSORLG00020016767	trub1	91	65.370	Oryzias_latipes_hni
ENSLAFG00000015452	TRUB1	79	62.816	ENSORLG00015014728	trub1	92	65.370	Oryzias_latipes_hsok
ENSLAFG00000015452	TRUB1	80	62.500	ENSOMEG00000014556	trub1	90	65.370	Oryzias_melastigma
ENSLAFG00000015452	TRUB1	99	80.392	ENSOGAG00000015895	TRUB1	99	79.272	Otolemur_garnettii
ENSLAFG00000015452	TRUB1	86	83.062	ENSOARG00000015591	TRUB1	99	76.880	Ovis_aries
ENSLAFG00000015452	TRUB1	100	79.888	ENSPPAG00000043645	TRUB1	100	79.330	Pan_paniscus
ENSLAFG00000015452	TRUB1	85	85.284	ENSPPRG00000007096	TRUB1	99	80.056	Panthera_pardus
ENSLAFG00000015452	TRUB1	85	85.619	ENSPTIG00000006378	TRUB1	99	80.337	Panthera_tigris_altaica
ENSLAFG00000015452	TRUB1	100	79.888	ENSPTRG00000002964	TRUB1	100	79.330	Pan_troglodytes
ENSLAFG00000015452	TRUB1	100	80.447	ENSPANG00000020712	TRUB1	100	79.609	Papio_anubis
ENSLAFG00000015452	TRUB1	80	72.760	ENSPSIG00000012877	TRUB1	88	76.172	Pelodiscus_sinensis
ENSLAFG00000015452	TRUB1	70	66.531	ENSPMGG00000000075	trub1	88	66.531	Periophthalmus_magnuspinnatus
ENSLAFG00000015452	TRUB1	88	78.641	ENSPEMG00000011156	Trub1	86	80.000	Peromyscus_maniculatus_bairdii
ENSLAFG00000015452	TRUB1	84	79.181	ENSPCIG00000009729	TRUB1	79	77.926	Phascolarctos_cinereus
ENSLAFG00000015452	TRUB1	72	65.873	ENSPFOG00000009950	trub1	91	65.873	Poecilia_formosa
ENSLAFG00000015452	TRUB1	72	65.873	ENSPLAG00000013855	trub1	87	65.873	Poecilia_latipinna
ENSLAFG00000015452	TRUB1	76	63.774	ENSPMEG00000009064	trub1	90	65.873	Poecilia_mexicana
ENSLAFG00000015452	TRUB1	72	66.667	ENSPREG00000003343	trub1	90	66.667	Poecilia_reticulata
ENSLAFG00000015452	TRUB1	96	79.942	ENSPPYG00000002676	TRUB1	100	79.050	Pongo_abelii
ENSLAFG00000015452	TRUB1	100	84.444	ENSPCAG00000008427	TRUB1	100	83.889	Procavia_capensis
ENSLAFG00000015452	TRUB1	99	75.630	ENSPCOG00000024360	TRUB1	99	74.230	Propithecus_coquereli
ENSLAFG00000015452	TRUB1	73	84.151	ENSPVAG00000007575	TRUB1	100	84.151	Pteropus_vampyrus
ENSLAFG00000015452	TRUB1	75	65.649	ENSPNYG00000018614	trub1	91	67.063	Pundamilia_nyererei
ENSLAFG00000015452	TRUB1	74	58.462	ENSPNAG00000006881	trub1	78	60.246	Pygocentrus_nattereri
ENSLAFG00000015452	TRUB1	99	74.432	ENSRNOG00000017321	Trub1	99	74.000	Rattus_norvegicus
ENSLAFG00000015452	TRUB1	100	70.670	ENSRBIG00000033423	TRUB1	100	69.832	Rhinopithecus_bieti
ENSLAFG00000015452	TRUB1	100	80.168	ENSRROG00000033902	TRUB1	100	79.330	Rhinopithecus_roxellana
ENSLAFG00000015452	TRUB1	100	80.168	ENSSBOG00000024237	TRUB1	100	79.330	Saimiri_boliviensis_boliviensis
ENSLAFG00000015452	TRUB1	75	77.567	ENSSHAG00000009346	TRUB1	86	76.806	Sarcophilus_harrisii
ENSLAFG00000015452	TRUB1	69	69.136	ENSSFOG00015022124	trub1	83	69.136	Scleropages_formosus
ENSLAFG00000015452	TRUB1	74	66.409	ENSSMAG00000001020	trub1	88	67.886	Scophthalmus_maximus
ENSLAFG00000015452	TRUB1	69	68.750	ENSSDUG00000016414	trub1	90	68.000	Seriola_dumerili
ENSLAFG00000015452	TRUB1	69	69.167	ENSSLDG00000015486	trub1	90	68.400	Seriola_lalandi_dorsalis
ENSLAFG00000015452	TRUB1	80	75.627	ENSSPUG00000001642	TRUB1	88	78.906	Sphenodon_punctatus
ENSLAFG00000015452	TRUB1	79	64.621	ENSSPAG00000001217	trub1	91	67.451	Stegastes_partitus
ENSLAFG00000015452	TRUB1	99	77.871	ENSSSCG00000010653	TRUB1	99	77.031	Sus_scrofa
ENSLAFG00000015452	TRUB1	75	75.758	ENSTGUG00000010971	TRUB1	89	77.600	Taeniopygia_guttata
ENSLAFG00000015452	TRUB1	74	68.462	ENSTBEG00000002880	TRUB1	99	67.308	Tupaia_belangeri
ENSLAFG00000015452	TRUB1	59	91.827	ENSTTRG00000005767	TRUB1	100	84.411	Tursiops_truncatus
ENSLAFG00000015452	TRUB1	86	86.000	ENSUAMG00000024876	TRUB1	99	80.672	Ursus_americanus
ENSLAFG00000015452	TRUB1	86	86.000	ENSUMAG00000002411	TRUB1	99	81.375	Ursus_maritimus
ENSLAFG00000015452	TRUB1	99	81.793	ENSVPAG00000005507	TRUB1	99	80.952	Vicugna_pacos
ENSLAFG00000015452	TRUB1	99	82.203	ENSVVUG00000010085	TRUB1	83	79.944	Vulpes_vulpes
ENSLAFG00000015452	TRUB1	75	67.557	ENSXETG00000023828	trub1	92	68.235	Xenopus_tropicalis
ENSLAFG00000015452	TRUB1	69	65.432	ENSXCOG00000017847	trub1	86	65.432	Xiphophorus_couchianus
ENSLAFG00000015452	TRUB1	72	65.079	ENSXMAG00000014701	trub1	90	65.079	Xiphophorus_maculatus